Symbol:
Gan
Name:
gigaxonin
RGD ID:
1307766
Description:
Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in giant axonal neuropathy 1. Orthologous to human GAN (gigaxonin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
giant axonal neuropathy; LOC307893
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
GAN (gigaxonin) HGNC
Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther
Mus musculus (house mouse):
Gan (giant axonal neuropathy) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Gan (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
GAN (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
GAN (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Gan (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
GAN (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
GAN (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Gan (gigaxonin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
RAP2A (RAP2A, member of RAS oncogene family) HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
GAN (gigaxonin)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Gan (giant axonal neuropathy)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
gan (gigaxonin)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
gan
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 62,116,600 - 62,173,879 (+) NCBI GRCr8 mRatBN7.2 19 45,207,783 - 45,265,066 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 45,207,184 - 45,254,107 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 52,017,893 - 52,064,198 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 52,670,909 - 52,717,223 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 54,915,137 - 54,961,451 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 49,692,790 - 49,746,178 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 49,695,579 - 49,741,965 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 60,480,642 - 60,533,157 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 47,263,532 - 47,310,683 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 47,268,492 - 47,315,557 (+) NCBI Celera 19 44,479,857 - 44,526,017 (+) NCBI Celera Cytogenetic Map 19 q12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Gan Rat Charcot-Marie-Tooth disease ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Charcot-Marie-Tooth disease ClinVar PMID:24627108|PMID:25025039|PMID:25741868|PMID:28492532 Gan Rat developmental and epileptic encephalopathy 1 ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 1 ClinVar PMID:28492532|PMID:31780880 Gan Rat familial cold autoinflammatory syndrome 3 ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Familial cold autoinflammatory syndrome 3 ClinVar PMID:28492532 Gan Rat genetic disease ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Inborn genetic diseases ClinVar PMID:11062483|PMID:12655563|PMID:12668605|PMID:14718689|PMID:16199547|PMID:17331252|PMID:17576681|PMID:17578852|PMID:20949505|PMID:23248352|PMID:23332420|PMID:23585478|PMID:23890932|PMID:24758703|PMID:25025039|PMID:25741868|PMID:28492532|PMID:32999401|PMID:34114613|PMID:37273706|PMID:37712079|PMID:9536098 Gan Rat Giant Axonal Neuropathy ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Giant axonal neuropathy ClinVar PMID:14718689|PMID:16565160|PMID:17578852|PMID:25741868|PMID:28492532|PMID:34114613|PMID:37273706|PMID:37712079 Gan Rat giant axonal neuropathy 1 ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Giant axonal neuropathy 1 ClinVar PMID:11053687|PMID:11062483|PMID:11971098|PMID:12655563|PMID:12668605|PMID:14718689|PMID:15897506|PMID:16199547|PMID:17331252|PMID:17576681|PMID:17578852|PMID:17587580|PMID:19231187|PMID:19295179|PMID:20949505|PMID:21356581|PMID:2153943|PMID:23248352|PMID:23316953|PMID:23332420|PMID:23585478|PMID:23890932|PMID:24464710|PMID:24627108|PMID:24758703|PMID:25025039|PMID:25040701|PMID:25326635|PMID:25741868|PMID:26392352|PMID:28492532|PMID:29876741|PMID:30246730|PMID:30373780|PMID:30532362|PMID:31655922|PMID:31771860|PMID:32158379|PMID:32999401|PMID:34114613|PMID:37273706|PMID:37673932|PMID:37712079|PMID:38703036|PMID:9536098 Gan Rat intellectual disability ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Intellectual disability ClinVar PMID:30167849 Gan Rat Muscle Hypotonia ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Hypotonia ClinVar Gan Rat neuropathy ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Peripheral neuropathy ClinVar PMID:24758703|PMID:25741868|PMID:28492532 Gan Rat peripheral nervous system disease ISO RGD:1317147 8554872 ClinVar Annotator: match by term: Peripheral neuropathy ClinVar PMID:24758703|PMID:25741868|PMID:28492532
Only show annotations with direct experimental evidence (0 objects hidden)
Gan Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO RGD:1317148 6480464 Tetrachlorodibenzodioxin affects the expression of GAN mRNA CTD PMID:21570461 Gan Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of GAN mRNA CTD PMID:33387578 Gan Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of GAN mRNA CTD PMID:22298810 Gan Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO RGD:1317148 6480464 Tetrachlorodibenzodioxin results in decreased expression of GAN mRNA CTD PMID:21889950 Gan Rat 2,3,7,8-Tetrachlorodibenzofuran decreases expression EXP 6480464 2,3,7,8-tetrachlorodibenzofuran results in decreased expression of GAN mRNA CTD PMID:32109520 Gan Rat 3,4-methylenedioxymethamphetamine decreases expression ISO RGD:1317148 6480464 N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of GAN mRNA CTD PMID:20188158 Gan Rat 4,4'-sulfonyldiphenol decreases expression ISO RGD:1317148 6480464 bisphenol S results in decreased expression of GAN mRNA CTD PMID:39298647 Gan Rat acetamide decreases expression EXP 6480464 acetamide results in decreased expression of GAN mRNA CTD PMID:31881176 Gan Rat aflatoxin B1 increases expression ISO RGD:1317148 6480464 Aflatoxin B1 results in increased expression of GAN mRNA CTD PMID:19770486 Gan Rat aflatoxin B1 decreases expression EXP 6480464 Aflatoxin B1 results in decreased expression of GAN mRNA CTD PMID:33354967 Gan Rat aflatoxin B1 increases methylation ISO RGD:1317147 6480464 Aflatoxin B1 results in increased methylation of GAN gene CTD PMID:27153756 Gan Rat arsenite(3-) multiple interactions ISO RGD:1317147 6480464 arsenite inhibits the reaction [G3BP1 protein binds to GAN mRNA] CTD PMID:32406909 Gan Rat Benoxacor decreases expression ISO RGD:1317148 6480464 benoxacor results in decreased expression of GAN mRNA CTD PMID:34850242 Gan Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of GAN mRNA CTD PMID:25181051 Gan Rat bisphenol A decreases expression ISO RGD:1317148 6480464 bisphenol A results in decreased expression of GAN mRNA CTD PMID:38074096 Gan Rat bisphenol A decreases methylation ISO RGD:1317148 6480464 bisphenol A results in decreased methylation of GAN promoter CTD PMID:27312807 Gan Rat bisphenol A increases methylation EXP 6480464 bisphenol A results in increased methylation of GAN gene CTD PMID:28505145 Gan Rat bisphenol AF increases expression EXP 6480464 bisphenol AF results in increased expression of GAN mRNA CTD PMID:27567155 Gan Rat bisphenol F increases expression ISO RGD:1317148 6480464 bisphenol F results in increased expression of GAN mRNA CTD PMID:38685157 Gan Rat carbon nanotube increases expression ISO RGD:1317148 6480464 Nanotubes, Carbon results in increased expression of GAN mRNA CTD PMID:25620056 Gan Rat copper(II) sulfate increases expression ISO RGD:1317147 6480464 Copper Sulfate results in increased expression of GAN mRNA CTD PMID:19549813 Gan Rat cyclosporin A increases expression ISO RGD:1317147 6480464 Cyclosporine results in increased expression of GAN mRNA CTD PMID:25562108 Gan Rat Dibutyl phosphate affects expression ISO RGD:1317147 6480464 di-n-butylphosphoric acid affects the expression of GAN mRNA CTD PMID:37042841 Gan Rat doxorubicin decreases expression ISO RGD:1317147 6480464 Doxorubicin results in decreased expression of GAN mRNA CTD PMID:29803840 Gan Rat ethanol increases expression ISO RGD:1317148 6480464 Ethanol results in increased expression of GAN mRNA CTD PMID:30319688 Gan Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of GAN mRNA CTD PMID:33387578 Gan Rat GSK-J4 increases expression ISO RGD:1317147 6480464 GSK-J4 results in increased expression of GAN mRNA CTD PMID:29301935 Gan Rat maneb multiple interactions ISO RGD:1317148 6480464 [Maneb co-treated with Paraquat] results in increased expression of GAN mRNA CTD PMID:36117858 Gan Rat methoxychlor affects methylation EXP 6480464 Methoxychlor affects the methylation of GAN gene CTD PMID:35440735 Gan Rat nickel sulfate increases expression ISO RGD:1317147 6480464 nickel sulfate results in increased expression of GAN mRNA CTD PMID:22714537 Gan Rat okadaic acid increases expression ISO RGD:1317147 6480464 Okadaic Acid results in increased expression of GAN mRNA CTD PMID:38832940 Gan Rat paracetamol increases expression EXP 6480464 Acetaminophen results in increased expression of GAN mRNA CTD PMID:33387578 Gan Rat paraquat multiple interactions ISO RGD:1317148 6480464 [Maneb co-treated with Paraquat] results in increased expression of GAN mRNA CTD PMID:36117858 Gan Rat perfluorooctanoic acid increases expression ISO RGD:1317147 6480464 perfluorooctanoic acid results in increased expression of GAN mRNA CTD PMID:36326898 Gan Rat phenobarbital affects expression ISO RGD:1317148 6480464 Phenobarbital affects the expression of GAN mRNA CTD PMID:23091169 Gan Rat pirinixic acid multiple interactions ISO RGD:1317148 6480464 [pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ... CTD PMID:19710929 Gan Rat potassium chromate increases expression ISO RGD:1317147 6480464 potassium chromate(VI) results in increased expression of GAN mRNA CTD PMID:22714537 Gan Rat quercetin increases expression ISO RGD:1317147 6480464 Quercetin results in increased expression of GAN mRNA CTD PMID:21632981 Gan Rat resorcinol decreases expression ISO RGD:1317147 6480464 resorcinol results in decreased expression of GAN mRNA CTD PMID:22623647 Gan Rat silicon dioxide increases expression ISO RGD:1317148 6480464 Silicon Dioxide results in increased expression of GAN mRNA CTD PMID:23221170 Gan Rat silver atom decreases expression ISO RGD:1317148 6480464 Silver results in decreased expression of GAN mRNA CTD PMID:27131904 Gan Rat silver(0) decreases expression ISO RGD:1317148 6480464 Silver results in decreased expression of GAN mRNA CTD PMID:27131904 Gan Rat sodium arsenite increases expression ISO RGD:1317147 6480464 sodium arsenite results in increased expression of GAN mRNA CTD PMID:22714537|PMID:38568856 Gan Rat stavudine decreases expression ISO RGD:1317148 6480464 Stavudine results in decreased expression of GAN mRNA; Stavudine results in decreased expression of GAN more ... CTD PMID:19398414 Gan Rat sunitinib increases expression ISO RGD:1317147 6480464 Sunitinib results in increased expression of GAN mRNA CTD PMID:31533062 Gan Rat T-2 toxin increases expression ISO RGD:1317147 6480464 T-2 Toxin results in increased expression of GAN mRNA CTD PMID:34581912 Gan Rat thioacetamide increases expression EXP 6480464 Thioacetamide results in increased expression of GAN mRNA CTD PMID:34492290 Gan Rat titanium dioxide decreases methylation ISO RGD:1317148 6480464 titanium dioxide results in decreased methylation of GAN promoter CTD PMID:35295148 Gan Rat triphenyl phosphate affects expression ISO RGD:1317147 6480464 triphenyl phosphate affects the expression of GAN mRNA CTD PMID:37042841 Gan Rat triptonide increases expression ISO RGD:1317148 6480464 triptonide results in increased expression of GAN mRNA CTD PMID:33045310 Gan Rat trovafloxacin increases expression ISO RGD:1317148 6480464 trovafloxacin results in increased expression of GAN mRNA CTD PMID:35537566 Gan Rat urethane increases expression ISO RGD:1317147 6480464 Urethane results in increased expression of GAN mRNA CTD PMID:28818685 Gan Rat valproic acid increases expression ISO RGD:1317147 6480464 Valproic Acid results in increased expression of GAN mRNA CTD PMID:23179753 Gan Rat valproic acid decreases expression EXP 6480464 Valproic Acid results in decreased expression of GAN mRNA CTD PMID:29427782
2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2,3,7,8-Tetrachlorodibenzofuran (EXP) 3,4-methylenedioxymethamphetamine (ISO) 4,4'-sulfonyldiphenol (ISO) acetamide (EXP) aflatoxin B1 (EXP,ISO) arsenite(3-) (ISO) Benoxacor (ISO) bisphenol A (EXP,ISO) bisphenol AF (EXP) bisphenol F (ISO) carbon nanotube (ISO) copper(II) sulfate (ISO) cyclosporin A (ISO) Dibutyl phosphate (ISO) doxorubicin (ISO) ethanol (ISO) gentamycin (EXP) GSK-J4 (ISO) maneb (ISO) methoxychlor (EXP) nickel sulfate (ISO) okadaic acid (ISO) paracetamol (EXP) paraquat (ISO) perfluorooctanoic acid (ISO) phenobarbital (ISO) pirinixic acid (ISO) potassium chromate (ISO) quercetin (ISO) resorcinol (ISO) silicon dioxide (ISO) silver atom (ISO) silver(0) (ISO) sodium arsenite (ISO) stavudine (ISO) sunitinib (ISO) T-2 toxin (ISO) thioacetamide (EXP) titanium dioxide (ISO) triphenyl phosphate (ISO) triptonide (ISO) trovafloxacin (ISO) urethane (ISO) valproic acid (EXP,ISO)
Gan Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 19 62,116,600 - 62,173,879 (+) NCBI GRCr8 mRatBN7.2 19 45,207,783 - 45,265,066 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 19 45,207,184 - 45,254,107 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 19 52,017,893 - 52,064,198 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 19 52,670,909 - 52,717,223 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 19 54,915,137 - 54,961,451 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 19 49,692,790 - 49,746,178 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 19 49,695,579 - 49,741,965 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 19 60,480,642 - 60,533,157 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 19 47,263,532 - 47,310,683 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 19 47,268,492 - 47,315,557 (+) NCBI Celera 19 44,479,857 - 44,526,017 (+) NCBI Celera Cytogenetic Map 19 q12 NCBI
GAN Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 81,314,962 - 81,390,809 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 81,314,944 - 81,390,884 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 81,348,567 - 81,424,414 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 79,906,076 - 79,971,441 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 79,906,075 - 79,971,441 NCBI Celera 16 65,645,867 - 65,711,100 (+) NCBI Celera Cytogenetic Map 16 q23.2 NCBI HuRef 16 67,103,386 - 67,168,596 (+) NCBI HuRef CHM1_1 16 82,759,876 - 82,825,083 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 87,375,728 - 87,451,557 (+) NCBI T2T-CHM13v2.0
Gan Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 117,884,720 - 117,932,573 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 117,884,874 - 117,942,736 (+) Ensembl GRCm39 Ensembl GRCm38 8 117,157,981 - 117,205,834 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 117,158,135 - 117,215,997 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 119,682,035 - 119,729,086 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 120,044,112 - 120,091,163 (+) NCBI MGSCv36 mm8 Celera 8 121,377,818 - 121,424,875 (+) NCBI Celera Cytogenetic Map 8 E1 NCBI cM Map 8 63.71 NCBI
Gan Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955522 4,035,672 - 4,090,630 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955522 4,035,672 - 4,096,845 (+) NCBI ChiLan1.0 ChiLan1.0
GAN Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 91,056,924 - 91,140,629 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 96,976,406 - 97,060,039 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 16 61,919,004 - 61,994,811 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 16 81,347,221 - 81,410,363 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 81,347,215 - 81,410,363 (+) Ensembl panpan1.1 panPan2
GAN Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 70,518,667 - 70,579,398 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 70,530,396 - 70,579,567 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 70,488,907 - 70,528,607 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 70,823,382 - 70,884,349 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 70,827,374 - 70,884,517 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 70,766,100 - 70,826,821 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 70,601,294 - 70,662,010 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 71,079,113 - 71,139,854 (-) NCBI UU_Cfam_GSD_1.0
Gan Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 30,609,452 - 30,661,047 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936475 28,945,908 - 28,967,653 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936475 28,913,132 - 28,979,656 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GAN Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 6,933,503 - 6,989,653 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 6,921,446 - 6,989,670 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 7,466,847 - 7,524,943 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GAN Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 5 66,754,752 - 66,820,933 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 5 66,754,893 - 66,816,761 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666047 9,017,449 - 9,081,670 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Gan
.
Predicted Target Of
Count of predictions: 501 Count of miRNA genes: 261 Interacting mature miRNAs: 332 Transcripts: ENSRNOT00000016963 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
61350 Bp32 Blood pressure QTL 32 0.012 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 19 20483575 57337602 Rat 61447 Tcas1 Tongue tumor susceptibility QTL 1 6.08 tongue integrity trait (VT:0010553) squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875) 19 2316121 47316121 Rat 724546 Kidm3 Kidney mass QTL 3 3.1 kidney mass (VT:0002707) calculated kidney weight (CMO:0000160) 19 29322490 57337602 Rat 7411549 Bw130 Body weight QTL 130 5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 15455860 57337602 Rat 1358200 Insglur2 Insulin/glucose ratio QTL 2 4.1 blood glucose amount (VT:0000188) serum glucose level (CMO:0000543) 19 33838214 55283146 Rat 1331737 Uae29 Urinary albumin excretion QTL 29 5.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 4096155 55283277 Rat 2298478 Eau8 Experimental allergic uveoretinitis QTL 8 0.0163 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 19 17154433 57337602 Rat 8694186 Bw152 Body weight QTL 152 3.34 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 19 569374 45569374 Rat 1578764 Stresp19 Stress response QTL 19 3.6 0.001 blood renin amount (VT:0003349) plasma renin activity level (CMO:0000116) 19 15630201 57337602 Rat 5135224 Leukc1 Leukocyte quantity QTL 1 eosinophil quantity (VT:0002602) blood eosinophil count (CMO:0000033) 19 44340214 55283277 Rat 1331788 Rf45 Renal function QTL 45 2.818 kidney blood vessel physiology trait (VT:0100012) absolute change in renal blood flow rate (CMO:0001168) 19 15605023 46559041 Rat 2317848 Alcrsp21 Alcohol response QTL 21 1.899999976158142 0.05 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 19 3204777 48204777 Rat 9589102 Slep13 Serum leptin concentration QTL 13 4.63 0.001 blood leptin amount (VT:0005667) plasma leptin level (CMO:0000781) 19 569374 45569374 Rat 7247442 Uae39 Urinary albumin excretion QTL 39 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 19 2187927 46708701 Rat 724566 Uae12 Urinary albumin excretion QTL 12 5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 19 2187927 56457239 Rat
AU047749
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 19 45,219,809 - 45,220,021 (+) MAPPER mRatBN7.2 Rnor_6.0 19 49,707,511 - 49,707,722 NCBI Rnor6.0 Rnor_5.0 19 60,494,570 - 60,494,781 UniSTS Rnor5.0 RGSC_v3.4 19 47,275,479 - 47,275,690 UniSTS RGSC3.4 Celera 19 44,491,791 - 44,492,002 UniSTS Cytogenetic Map 19 q12 UniSTS
BQ193745
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 19 45,205,999 - 45,206,175 (+) MAPPER mRatBN7.2 Rnor_6.0 19 49,693,715 - 49,693,890 NCBI Rnor6.0 Rnor_5.0 19 60,480,774 - 60,480,949 UniSTS Rnor5.0 RGSC_v3.4 19 47,261,668 - 47,261,843 UniSTS RGSC3.4 Celera 19 44,477,993 - 44,478,168 UniSTS RH 3.4 Map 19 631.7 UniSTS Cytogenetic Map 19 q12 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000016963 ⟹ ENSRNOP00000016963
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 19 45,207,184 - 45,254,107 (+) Ensembl Rnor_6.0 Ensembl 19 49,695,579 - 49,741,965 (+) Ensembl
RefSeq Acc Id:
NM_001414939 ⟹ NP_001401868
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 62,116,600 - 62,173,879 (+) NCBI mRatBN7.2 19 45,207,783 - 45,265,066 (+) NCBI
RefSeq Acc Id:
XM_039097773 ⟹ XP_038953701
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 62,147,610 - 62,173,879 (+) NCBI mRatBN7.2 19 45,238,804 - 45,258,831 (+) NCBI
RefSeq Acc Id:
XM_039097774 ⟹ XP_038953702
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 19 62,116,797 - 62,173,879 (+) NCBI mRatBN7.2 19 45,207,982 - 45,258,831 (+) NCBI
Ensembl Acc Id:
ENSRNOP00000016963 ⟸ ENSRNOT00000016963
RefSeq Acc Id:
XP_038953702 ⟸ XM_039097774
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_038953701 ⟸ XM_039097773
- Peptide Label:
isoform X2
RefSeq Acc Id:
NP_001401868 ⟸ NM_001414939
- UniProtKB:
A6IZH1 (UniProtKB/TrEMBL), D3ZRI9 (UniProtKB/TrEMBL)
RGD ID: 13701171 Promoter ID: EPDNEW_R11694 Type: single initiation site Name: Gan_1 Description: gigaxonin SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 19 49,695,498 - 49,695,558 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2008-10-17
Gan
gigaxonin
Gan
giant axonal neuropathy
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2008-04-30
Gan
giant axonal neuropathy
Gan_predicted
giant axonal neuropathy (predicted)
'predicted' is removed
2292626 APPROVED
2005-01-12
Gan_predicted
giant axonal neuropathy (predicted)
Symbol and Name status set to approved
70820 APPROVED
