Cab39 (calcium binding protein 39) - Rat Genome Database

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Gene: Cab39 (calcium binding protein 39) Rattus norvegicus
Analyze
Symbol: Cab39
Name: calcium binding protein 39
RGD ID: 1306390
Description: Predicted to enable kinase binding activity and protein serine/threonine kinase activator activity. Involved in response to activity and response to thyroid hormone. Part of protein-containing complex. Colocalizes with Z disc. Biomarker of hyperthyroidism and transient cerebral ischemia. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CAB39 (calcium binding protein 39); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; mTOR signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium-binding protein 39; LOC301574; MO25; MO25alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8993,911,099 - 93,972,542 (+)NCBIGRCr8
mRatBN7.2986,463,095 - 86,524,545 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,463,095 - 86,524,544 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx994,881,079 - 94,942,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,009,571 - 100,070,988 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,390,372 - 98,451,789 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0992,834,327 - 92,895,778 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl992,834,357 - 92,895,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,563,873 - 92,625,079 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,528,678 - 84,590,375 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1984,712,097 - 84,773,624 (+)NCBI
Celera983,885,355 - 83,945,864 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Liver Kinase B1 complex acts as a novel modifier of myofilament function and localizes to the Z-disk in cardiac myocytes. Behunin SM, etal., Arch Biochem Biophys. 2016 Jul 1;601:32-41. doi: 10.1016/j.abb.2016.03.012. Epub 2016 Mar 10.
2. WNK-Cab39-NKCC1 signaling increases the susceptibility to ischemic brain damage in hypertensive rats. Bhuiyan MIH, etal., J Cereb Blood Flow Metab. 2017 Aug;37(8):2780-2794. doi: 10.1177/0271678X16675368. Epub 2016 Jan 1.
3. Thyroid hormone effects on LKB1, MO25, phospho-AMPK, phospho-CREB, and PGC-1alpha in rat muscle. Branvold DJ, etal., J Appl Physiol (1985). 2008 Oct;105(4):1218-27. doi: 10.1152/japplphysiol.00997.2007. Epub 2008 Jul 31.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. MiR-451 Promotes Cell Proliferation and Metastasis in Pancreatic Cancer through Targeting CAB39. Guo R, etal., Biomed Res Int. 2017;2017:2381482. doi: 10.1155/2017/2381482. Epub 2017 Jan 19.
7. The AMP-activated protein kinase pathway--new players upstream and downstream. Hardie DG J Cell Sci. 2004 Nov 1;117(Pt 23):5479-87.
8. Complexes between the LKB1 tumor suppressor, STRAD alpha/beta and MO25 alpha/beta are upstream kinases in the AMP-activated protein kinase cascade. Hawley SA, etal., J Biol. 2003;2(4):28. Epub 2003 Sep 24.
9. Calcium-binding protein 39 promotes hepatocellular carcinoma growth and metastasis by activating extracellular signal-regulated kinase signaling pathway. Jiang L, etal., Hepatology. 2017 Nov;66(5):1529-1545. doi: 10.1002/hep.29312. Epub 2017 Sep 29.
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Endurance training increases LKB1 and MO25 protein but not AMP-activated protein kinase kinase activity in skeletal muscle. Taylor EB, etal., Am J Physiol Endocrinol Metab. 2004 Dec;287(6):E1082-9. doi: 10.1152/ajpendo.00179.2004. Epub 2004 Aug 3.
Additional References at PubMed
PMID:18854309   PMID:19056867   PMID:19199708   PMID:19892943   PMID:23376485   PMID:23533145   PMID:24393035   PMID:24811174  


Genomics

Comparative Map Data
Cab39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8993,911,099 - 93,972,542 (+)NCBIGRCr8
mRatBN7.2986,463,095 - 86,524,545 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,463,095 - 86,524,544 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx994,881,079 - 94,942,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,009,571 - 100,070,988 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,390,372 - 98,451,789 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0992,834,327 - 92,895,778 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl992,834,357 - 92,895,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,563,873 - 92,625,079 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,528,678 - 84,590,375 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1984,712,097 - 84,773,624 (+)NCBI
Celera983,885,355 - 83,945,864 (+)NCBICelera
Cytogenetic Map9q35NCBI
CAB39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,712,842 - 230,821,075 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,712,842 - 230,821,075 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,577,557 - 231,685,790 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,285,909 - 231,394,031 (+)NCBINCBI36Build 36hg18NCBI36
Build 342231,403,169 - 231,511,291NCBI
Celera2225,353,992 - 225,462,181 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2223,417,541 - 223,525,784 (+)NCBIHuRef
CHM1_12231,583,373 - 231,691,604 (+)NCBICHM1_1
T2T-CHM13v2.02231,195,928 - 231,304,198 (+)NCBIT2T-CHM13v2.0
Cab39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,707,796 - 85,779,298 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,721,162 - 85,779,297 (+)EnsemblGRCm39 Ensembl
GRCm38185,793,441 - 85,851,577 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,793,441 - 85,851,576 (+)EnsemblGRCm38mm10GRCm38
MGSCv37187,690,022 - 87,748,152 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36187,626,534 - 87,681,536 (+)NCBIMGSCv36mm8
Celera188,758,053 - 88,816,367 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
Cab39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,582,530 - 4,671,157 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,582,530 - 4,670,978 (-)NCBIChiLan1.0ChiLan1.0
CAB39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213133,337,088 - 133,445,443 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B133,352,306 - 133,460,408 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B117,965,688 - 118,074,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B236,809,549 - 236,870,646 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B236,809,549 - 236,870,646 (+)Ensemblpanpan1.1panPan2
CAB39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12542,752,798 - 42,801,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2542,703,332 - 42,799,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,337,333 - 43,362,013 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02542,975,275 - 43,058,499 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2542,960,717 - 43,058,482 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12542,904,232 - 42,987,504 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02542,746,950 - 42,830,129 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02542,902,163 - 42,985,458 (+)NCBIUU_Cfam_GSD_1.0
Cab39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303184,936,826 - 184,984,468 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365255,954,978 - 6,032,644 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365255,955,252 - 6,002,917 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAB39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15131,492,578 - 131,584,962 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115131,492,575 - 131,584,963 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CAB39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110116,749,173 - 116,860,814 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10116,798,825 - 116,861,332 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604082,601,451 - 82,709,564 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cab39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,130,052 - 4,217,540 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248434,129,755 - 4,217,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cab39
139 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:214
Interacting mature miRNAs:280
Transcripts:ENSRNOT00000066440
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat

Markers in Region
AA960512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,524,321 - 86,524,507 (+)MAPPERmRatBN7.2
mRatBN7.2192,915,384 - 92,915,568 (+)MAPPERmRatBN7.2
Rnor_6.0197,945,565 - 97,945,748NCBIRnor6.0
Rnor_6.0992,895,556 - 92,895,741NCBIRnor6.0
Rnor_5.0992,624,857 - 92,625,042UniSTSRnor5.0
Rnor_5.0199,027,336 - 99,027,519UniSTSRnor5.0
RGSC_v3.4192,777,751 - 92,777,934UniSTSRGSC3.4
RGSC_v3.4984,590,153 - 84,590,338UniSTSRGSC3.4
Celera983,945,642 - 83,945,827UniSTS
Celera187,223,205 - 87,223,388UniSTS
Cytogenetic Map9q35UniSTS
RH128526  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,524,319 - 86,524,517 (+)MAPPERmRatBN7.2
mRatBN7.2192,915,382 - 92,915,578 (+)MAPPERmRatBN7.2
Rnor_6.0197,945,563 - 97,945,758NCBIRnor6.0
Rnor_6.0992,895,554 - 92,895,751NCBIRnor6.0
Rnor_5.0992,624,855 - 92,625,052UniSTSRnor5.0
Rnor_5.0199,027,334 - 99,027,529UniSTSRnor5.0
RGSC_v3.4192,777,749 - 92,777,944UniSTSRGSC3.4
RGSC_v3.4984,590,151 - 84,590,348UniSTSRGSC3.4
Celera983,945,640 - 83,945,837UniSTS
Celera187,223,203 - 87,223,398UniSTS
Cytogenetic Map9q35UniSTS
RH131919  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,522,497 - 86,522,691 (+)MAPPERmRatBN7.2
Rnor_6.0992,893,732 - 92,893,925NCBIRnor6.0
Rnor_5.0992,623,033 - 92,623,226UniSTSRnor5.0
RGSC_v3.4984,588,329 - 84,588,522UniSTSRGSC3.4
Celera983,943,818 - 83,944,011UniSTS
Cytogenetic Map9q35UniSTS
RH139163  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,485,165 - 86,485,314 (+)MAPPERmRatBN7.2
Rnor_6.0992,856,425 - 92,856,573NCBIRnor6.0
Rnor_5.0992,585,941 - 92,586,089UniSTSRnor5.0
RGSC_v3.4984,550,746 - 84,550,894UniSTSRGSC3.4
Celera983,907,421 - 83,907,569UniSTS
Cytogenetic Map9q35UniSTS
UniSTS:234167  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,524,322 - 86,524,514 (+)MAPPERmRatBN7.2
mRatBN7.2150,020,767 - 50,020,952 (+)MAPPERmRatBN7.2
Rnor_6.0150,205,621 - 50,205,805NCBIRnor6.0
Rnor_6.0992,895,557 - 92,895,748NCBIRnor6.0
Rnor_5.0992,624,858 - 92,625,049UniSTSRnor5.0
Rnor_5.0149,548,684 - 49,548,868UniSTSRnor5.0
RGSC_v3.4984,590,154 - 84,590,345UniSTSRGSC3.4
RGSC_v3.4144,515,813 - 44,515,997UniSTSRGSC3.4
Celera145,805,255 - 45,805,439UniSTS
Celera983,945,643 - 83,945,834UniSTS
Cytogenetic Map1q11UniSTS
Cytogenetic Map9q35UniSTS
fk33e12.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2986,521,298 - 86,522,120 (+)MAPPERmRatBN7.2
Rnor_6.0992,892,533 - 92,893,354NCBIRnor6.0
Rnor_5.0992,621,834 - 92,622,655UniSTSRnor5.0
RGSC_v3.4984,587,130 - 84,587,951UniSTSRGSC3.4
Celera983,942,619 - 83,943,440UniSTS
Cytogenetic Map9q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000066440   ⟹   ENSRNOP00000060020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,463,095 - 86,524,544 (+)Ensembl
Rnor_6.0 Ensembl992,834,357 - 92,895,778 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085332   ⟹   ENSRNOP00000071044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,463,095 - 86,524,544 (+)Ensembl
Rnor_6.0 Ensembl992,859,988 - 92,893,614 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102022   ⟹   ENSRNOP00000076542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl986,514,670 - 86,524,544 (+)Ensembl
RefSeq Acc Id: NM_001106924   ⟹   NP_001100394
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,099 - 93,972,541 (+)NCBI
mRatBN7.2986,463,095 - 86,524,544 (+)NCBI
Rnor_6.0992,834,357 - 92,895,778 (+)NCBI
Rnor_5.0992,563,873 - 92,625,079 (+)NCBI
RGSC_v3.4984,528,678 - 84,590,375 (+)RGD
Celera983,885,355 - 83,945,864 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401625   ⟹   NP_001388554
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,099 - 93,972,542 (+)NCBI
mRatBN7.2986,463,095 - 86,524,545 (+)NCBI
RefSeq Acc Id: XM_006245374   ⟹   XP_006245436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,534 - 93,972,539 (+)NCBI
mRatBN7.2986,464,280 - 86,523,027 (+)NCBI
Rnor_6.0992,835,512 - 92,893,947 (+)NCBI
Rnor_5.0992,563,873 - 92,625,079 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245375   ⟹   XP_006245437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,992 - 93,972,539 (+)NCBI
mRatBN7.2986,464,061 - 86,523,027 (+)NCBI
Rnor_6.0992,835,155 - 92,893,947 (+)NCBI
Rnor_5.0992,563,873 - 92,625,079 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063267022   ⟹   XP_063123092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,545 - 93,972,539 (+)NCBI
RefSeq Acc Id: XM_063267023   ⟹   XP_063123093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,544 - 93,972,539 (+)NCBI
RefSeq Acc Id: XM_063267024   ⟹   XP_063123094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,523 - 93,972,539 (+)NCBI
RefSeq Acc Id: XM_063267025   ⟹   XP_063123095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,911,545 - 93,972,539 (+)NCBI
RefSeq Acc Id: XM_063267026   ⟹   XP_063123096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,912,146 - 93,972,539 (+)NCBI
RefSeq Acc Id: NP_001100394   ⟸   NM_001106924
- Peptide Label: isoform 1
- UniProtKB: D3ZJ77 (UniProtKB/TrEMBL),   A6JWF3 (UniProtKB/TrEMBL),   A0A8I5Y8Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245437   ⟸   XM_006245375
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245436   ⟸   XM_006245374
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071044   ⟸   ENSRNOT00000085332
RefSeq Acc Id: ENSRNOP00000060020   ⟸   ENSRNOT00000066440
RefSeq Acc Id: ENSRNOP00000076542   ⟸   ENSRNOT00000102022
RefSeq Acc Id: NP_001388554   ⟸   NM_001401625
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JZH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123094   ⟸   XM_063267024
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123093   ⟸   XM_063267023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123092   ⟸   XM_063267022
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123095   ⟸   XM_063267025
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123096   ⟸   XM_063267026
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZH0-F1-model_v2 AlphaFold A0A0G2JZH0 1-341 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696816
Promoter ID:EPDNEW_R7341
Type:initiation region
Name:Cab39_1
Description:calcium binding protein 39
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0992,834,343 - 92,834,403EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306390 AgrOrtholog
BioCyc Gene G2FUF-26925 BioCyc
Ensembl Genes ENSRNOG00000017297 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066440 ENTREZGENE
  ENSRNOT00000066440.3 UniProtKB/TrEMBL
  ENSRNOT00000085332 ENTREZGENE
  ENSRNOT00000085332.2 UniProtKB/TrEMBL
  ENSRNOT00000102022.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Mo25 UniProtKB/TrEMBL
KEGG Report rno:301574 UniProtKB/TrEMBL
NCBI Gene 301574 ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 39 UniProtKB/TrEMBL
  PTHR10182 UniProtKB/TrEMBL
Pfam Mo25 UniProtKB/TrEMBL
PhenoGen Cab39 PhenoGen
RatGTEx ENSRNOG00000017297 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2JZH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y8Z7 ENTREZGENE, UniProtKB/TrEMBL
  A6JWF3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJ77 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cab39  calcium binding protein 39   Cab39_predicted  calcium binding protein 39 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cab39_predicted  calcium binding protein 39 (predicted)      Symbol and Name status set to approved 70820 APPROVED