Tcta (T cell leukemia translocation altered) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tcta (T cell leukemia translocation altered) Ictidomys tridecemlineatus
Analyze
Symbol: Tcta
Name: T cell leukemia translocation altered
RGD ID: 12643659
Description: INVOLVED IN negative regulation of osteoclast differentiation (inferred); osteoclast fusion (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell leukemia translocation altered; T-cell leukemia translocation-altered gene protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,285,293 - 64,288,579 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,045,798 - 1,050,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,045,735 - 1,047,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Tcta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,285,293 - 64,288,579 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,045,798 - 1,050,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,045,735 - 1,047,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,412,423 - 49,416,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,412,212 - 49,416,476 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,449,856 - 49,453,909 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,424,643 - 49,428,913 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,424,642 - 49,428,912NCBI
Celera349,414,426 - 49,418,696 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,509,361 - 49,513,631 (+)NCBIHuRef
CHM1_1349,402,406 - 49,406,676 (+)NCBICHM1_1
T2T-CHM13v2.0349,441,802 - 49,445,855 (+)NCBIT2T-CHM13v2.0
Tcta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,180,157 - 108,183,174 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,180,157 - 108,183,359 (-)EnsemblGRCm39 Ensembl
GRCm389108,302,955 - 108,306,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,302,958 - 108,306,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,205,289 - 108,208,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,161,051 - 108,164,044 (-)NCBIMGSCv36mm8
Celera9107,912,001 - 107,914,995 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.2NCBI
Tcta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,867,153 - 117,871,132 (-)NCBIGRCr8
mRatBN7.28108,988,588 - 108,992,324 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,988,590 - 108,991,564 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,615,748 - 114,618,708 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,815,072 - 112,818,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,657,711 - 110,660,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,079,094 - 117,082,338 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,079,095 - 117,082,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,427,898 - 116,431,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,291,610 - 108,294,678 (-)NCBICelera
Cytogenetic Map8q32NCBI
Tcta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,347,639 - 1,349,864 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,347,639 - 1,349,864 (+)NCBIChiLan1.0ChiLan1.0
TCTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,394,560 - 49,398,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,399,352 - 49,403,426 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,340,010 - 49,344,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,584,614 - 50,588,891 (+)NCBIpanpan1.1PanPan1.1panPan2
TCTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,820,845 - 39,824,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,822,211 - 39,824,200 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,739,296 - 39,742,977 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,177,073 - 40,180,753 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,177,073 - 40,180,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,544,617 - 39,548,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,948,238 - 39,951,919 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,227,822 - 40,231,502 (-)NCBIUU_Cfam_GSD_1.0
TCTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,991,610 - 31,998,129 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,991,408 - 31,995,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TCTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,809,342 - 10,813,655 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,809,595 - 10,812,029 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,200,733 - 156,205,008 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,362,039 - 3,364,301 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,362,037 - 3,365,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021727467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000011133   ⟹   ENSSTOP00000009987
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365291,045,988 - 1,047,704 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000031285   ⟹   ENSSTOP00000030600
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365291,045,798 - 1,050,384 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000037706   ⟹   ENSSTOP00000025536
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365291,045,988 - 1,047,834 (+)Ensembl
RefSeq Acc Id: XM_021727467   ⟹   XP_021583142
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560264,285,293 - 64,288,579 (+)NCBI
SpeTri2.0NW_0049365291,045,735 - 1,047,922 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021583142 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009987.2
  ENSSTOP00000025536.1
  ENSSTOP00000030600.1
GenBank Protein KAG3270467 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021583142   ⟸   XM_021727467
- UniProtKB: A0A287DAL6 (UniProtKB/TrEMBL),   I3MGR5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000025536   ⟸   ENSSTOT00000037706
Ensembl Acc Id: ENSSTOP00000009987   ⟸   ENSSTOT00000011133
Ensembl Acc Id: ENSSTOP00000030600   ⟸   ENSSTOT00000031285


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011135 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011133.2 UniProtKB/TrEMBL
  ENSSTOT00000031285.1 UniProtKB/TrEMBL
  ENSSTOT00000037706.1 UniProtKB/TrEMBL
InterPro TCTA UniProtKB/TrEMBL
NCBI Gene Tcta ENTREZGENE
PANTHER PTHR32267 UniProtKB/TrEMBL
  T-CELL LEUKEMIA TRANSLOCATION-ALTERED GENE PROTEIN UniProtKB/TrEMBL
Pfam T_cell_tran_alt UniProtKB/TrEMBL
PIRSF TCTA UniProtKB/TrEMBL
UniProt A0A287CW80_ICTTR UniProtKB/TrEMBL
  A0A287DAL6 ENTREZGENE, UniProtKB/TrEMBL
  I3MGR5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 Tcta  T cell leukemia translocation altered    T-cell leukemia translocation altered  Symbol and/or name change 5135510 APPROVED