TCTA (T cell leukemia translocation altered) - Rat Genome Database
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Gene: TCTA (T cell leukemia translocation altered) Sus scrofa
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Symbol: TCTA
Name: T cell leukemia translocation altered
RGD ID: 14142630
Description: INVOLVED IN negative regulation of osteoclast differentiation (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: T-cell leukemia translocation-altered gene protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,991,567 - 31,998,168 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,991,408 - 31,995,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TCTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,991,567 - 31,998,168 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,991,408 - 31,995,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TCTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,412,206 - 49,416,475 (+)EnsemblGRCh38hg38GRCh38
GRCh38349,412,206 - 49,416,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,449,639 - 49,453,909 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,424,643 - 49,428,913 (+)NCBINCBI36hg18NCBI36
Build 34349,424,642 - 49,428,912NCBI
Celera349,414,426 - 49,418,696 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,509,361 - 49,513,631 (+)NCBIHuRef
CHM1_1349,402,406 - 49,406,676 (+)NCBICHM1_1
Tcta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,180,154 - 108,183,358 (-)NCBIGRCm39mm39
GRCm39 Ensembl9108,180,157 - 108,183,359 (-)Ensembl
GRCm389108,302,955 - 108,306,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,302,958 - 108,306,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,205,289 - 108,208,282 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,161,051 - 108,164,044 (-)NCBImm8
Celera9107,912,001 - 107,914,995 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.2NCBI
Tcta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,988,588 - 108,992,324 (-)NCBI
Rnor_6.0 Ensembl8117,079,095 - 117,082,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,079,094 - 117,082,338 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,427,898 - 116,431,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,291,610 - 108,294,678 (-)NCBICelera
Cytogenetic Map8q32NCBI
Tcta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,347,639 - 1,349,864 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,347,639 - 1,349,864 (+)NCBIChiLan1.0ChiLan1.0
TCTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,584,614 - 50,588,891 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0349,340,010 - 49,344,288 (+)NCBIMhudiblu_PPA_v0panPan3
TCTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,822,211 - 39,824,200 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,820,845 - 39,824,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tcta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,045,735 - 1,047,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCTA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,809,342 - 10,813,655 (+)NCBI
ChlSab1.1 Ensembl2210,809,595 - 10,812,029 (+)Ensembl
Tcta
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,362,037 - 3,365,621 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 3 1
Low 10 4 5 2 20 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000043143   ⟹   ENSSSCP00000044269
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,991,567 - 31,998,168 (+)Ensembl
RefSeq Acc Id: XM_021068738   ⟹   XP_020924397
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,991,411 - 31,995,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068739   ⟹   XP_020924398
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,991,408 - 31,995,274 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020924397 (Get FASTA)   NCBI Sequence Viewer  
  XP_020924398 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020924398   ⟸   XM_021068739
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020924397   ⟸   XM_021068738
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000044269   ⟸   ENSSSCT00000043143


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037459 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070003838 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000044269 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070005880 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043143 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070007185 UniProtKB/TrEMBL
InterPro TCTA UniProtKB/TrEMBL
NCBI Gene TCTA ENTREZGENE
PANTHER PTHR32267 UniProtKB/TrEMBL
Pfam T_cell_tran_alt UniProtKB/TrEMBL
PIRSF TCTA UniProtKB/TrEMBL
UniProt A0A287AK43_PIG UniProtKB/TrEMBL
  A0A4X1SSR7_PIG UniProtKB/TrEMBL