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Gene: TCTA (T cell leukemia translocation altered) Chlorocebus sabaeus

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Symbol:

TCTA

Name:

T cell leukemia translocation altered

RGD ID:

18414993

Description:

INVOLVED IN negative regulation of osteoclast differentiation (inferred); osteoclast fusion (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-cell leukemia translocation-altered gene protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,809,342 - 10,813,655 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	10,809,595 - 10,812,029 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	156,200,733 - 156,205,008 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 1 (ISO)

autosomal recessive limb-girdle muscular dystrophy type 2P (ISO)

carnitine-acylcarnitine translocase deficiency (ISO)

glycine encephalopathy (ISO)

Pierson syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of osteoclast differentiation (IEA)

osteoclast fusion (IEA)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

TCTA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,809,342 - 10,813,655 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	10,809,595 - 10,812,029 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	156,200,733 - 156,205,008 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TCTA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	49,412,423 - 49,416,476 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	49,412,212 - 49,416,476 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	49,449,856 - 49,453,909 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,424,643 - 49,428,913 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	49,424,642 - 49,428,912	NCBI
Celera	3	49,414,426 - 49,418,696 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,509,361 - 49,513,631 (+)	NCBI		HuRef
CHM1_1	3	49,402,406 - 49,406,676 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	49,441,802 - 49,445,855 (+)	NCBI		T2T-CHM13v2.0

Tcta
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,180,157 - 108,183,174 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	108,180,157 - 108,183,359 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	108,302,955 - 108,306,159 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,302,958 - 108,306,160 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,205,289 - 108,208,282 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	108,161,051 - 108,164,044 (-)	NCBI		MGSCv36	mm8
Celera	9	107,912,001 - 107,914,995 (-)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.2	NCBI

Tcta
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,867,153 - 117,871,132 (-)	NCBI		GRCr8
mRatBN7.2	8	108,988,588 - 108,992,324 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,988,590 - 108,991,564 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	114,615,748 - 114,618,708 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,815,072 - 112,818,032 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,657,711 - 110,660,671 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,079,094 - 117,082,338 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,079,095 - 117,082,162 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,427,898 - 116,431,164 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	8	108,291,610 - 108,294,678 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Tcta
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,347,639 - 1,349,864 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	1,347,639 - 1,349,864 (+)	NCBI	ChiLan1.0	ChiLan1.0

TCTA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	49,394,560 - 49,398,654 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	49,399,352 - 49,403,426 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	49,340,010 - 49,344,288 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	50,584,614 - 50,588,891 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TCTA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,820,845 - 39,824,526 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,822,211 - 39,824,200 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,739,296 - 39,742,977 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	40,177,073 - 40,180,753 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	40,177,073 - 40,180,399 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	39,544,617 - 39,548,297 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,948,238 - 39,951,919 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	40,227,822 - 40,231,502 (-)	NCBI		UU_Cfam_GSD_1.0

Tcta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,285,293 - 64,288,579 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,045,798 - 1,050,384 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,045,735 - 1,047,922 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCTA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,991,610 - 31,998,129 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,991,408 - 31,995,274 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Tcta
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	3,362,039 - 3,364,301 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	3,362,037 - 3,365,621 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TCTA
63 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007984225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000013161 ⟹ ENSCSAP00000011169

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	22	10,809,595 - 10,812,029 (+)	Ensembl

RefSeq Acc Id:

XM_007984225 ⟹ XP_007982416

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	10,809,342 - 10,813,655 (+)	NCBI
Vero_WHO_p1.0	NW_023666041	156,200,733 - 156,205,008 (-)	NCBI

Sequence:

show sequence

TCCGGGGCTATAAAAGACCTGGTTGCTATTTTGTACTCCCGGAGTCACTCATCCCTTAAGCAAG
TAGGGTGGGGTTAGGTGCGCGTGCGCGTTTTTAATACTCCTCCCCAAACTGCCAACACTTCACT
CAAGTGAAGTAGGCCCCGCCCTGCCTAGATTTACGCGTGCGCACTAACGGGCCTGGCCCGGAAG
ATCACACGCGTGCGTGGTAGGGACTACGGTGACAGTACCCCGGGTGGGGCGAGGGCCAGTCATG
GCGGAGCCCTGGTCTGGGCAGGCCTTGCAGGCTCTACCGGCCACGGTACTGGATGCGCTGGGCG
CGCTGGGCAGCGAATTCTTGAGGGAGTGGGAGGCGCAGGACATGCGCGTGACCCTTTTCAAGCT
GTTGCTGCTGTGGTTGGTGTTAAGTCTCCTGGGCATCCAGCTGGCGTGGGGGTTCTACGGGAAT
ACAGTGACCGGGTTGTATCACCGTCCAGGTCTGGGTGGTCAGAATGGATCCACGCCTGATGGCT
CCACGCATTTCCCTTCGTGGGGAATGGCAGCAAACGAACCTCTCAAAACCCACAGAGAATAAGG
GAAGGCAGCAGAGGGTCTCCAAGGGCATCACTGGGTCTGCTGGCTTCTACACTGGGTTCTGCTA
CTCCCCAGACCTCAGGGACAACTGCCGGGGGTTCAGGGTTGGTAGCAGGGTACCCAGTGCCTGC
AGGGCTGGGCCTCTTCTGCCTCTTGGCCCTACGCCCTCATCCAGGCACTGGGCAAGGGAAGAGT
TTGCCTGTACCCTTATCTGGGTGCCTTAAGGAGAGAGATTGTGTTCCTCCTCTCTCAGGGGTGA
TAACTCAGGAAGCCTCTGGGTTGGGAAGGCCATCAGTTCTTTTGTCTTAGGTTTCTTTTCCTGT
CCCTCTTCCCATCCCCGAGATATGATCCCATAAAAATATTTCCTGAGTTGGCCAGACGCGATGG
CTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGAGTTCG
AGACCAGCCTGACCAACATGGTGAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGTG
TAGTGGCGCACACCTGTAATCCCAGCTACTCAGGGGGCTAAGGCAGGAGATTCGCTTGAACCTG
GGAGGCAGAGGTTGCAGTGAGCTAAGATTGCGCCGTTGTACTCCAACCTGGGTGACAGAGCGAG
ACTCCATTTCAAAAAAAAAAAAAAAATTTTTTTCCTGAGAGGAAGCCTGAGGTTGACCAGCTCT
GGGATATGTAAGGCAGGTCTGTTTTCTCCTAAGCCCTGAGTTTTCTGAATCCCTGGTTTTGCTT
TGTTGGCAAGGAGCCAGGGAGTCCTGACCTGAGCCAGACCTTAAGCTCTATGGTTATTTAGCTG
GCCATTCAGGTATAAGGCAGGGTGGTGTCCCTGCTGGCACCATCCAGATTGAGGCACCAAACAC
CCACATCCCTGGCCCAATCAGATTTCTCCTGTGAGCCAGGCAAAGGAAATTGTCATCTGCCAAC
TGTCCTACTCATATTCCTCTCAGTCCTTCTTGGGGGTAAGCTGAGTACCTGAAGGAGCACAGCT
GAACCGCTGGGGTAGCCTCCTACCCTCCACTGCTTAAGTGCCTATGGGAATGTGGGTCTGTACC
TTGTCCCCTCATAGGATGGTACCAAGCATTTAGTGCACAGTGGCCCCATCATAGCCTGTAGCCT
CATCATTACCCGTCTGGACCTGGTACAAACGCATGTCACAGCCTCAGCTCCTCCCCACTAGCAT
CTTCTCTGCCTTCAAGAACCAGGCAGCCCTGCCATGTCACAGTAGGCCAGAGGAGTTTCCAAAG
GCGTGGGTGGCAAATGCCCCTATAGAAACACCAGTACCTGAAAGCACTGTAGCCCTGGACCTGC
CTCCTTCCCTCATGGCCATACTTCTGCTTCCATCTGCTGGGCCACCAGCCACTTTAGTGACCCC
TGCCTACTTCCTCCCTGTTGGATGTCACACTTCCATCTGGTTGCCTTTGTCTAAGCCATCTTTG
TGGTAGAGGGGCACTGGAATTGCAGCTGTACTGAGGATGATGGTCTTCACAGCCCCAGGCCCAC
CCACTGATACTACTGCACAGAGTCAGGATCTCACATTTCACCCCAGGCTCAACTGAGGATGTGG
CTTATTAAACACGGAAGTGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007982416	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000011169
	ENSCSAP00000011169.1

RefSeq Acc Id:	XP_007982416 ⟸ XM_007984225
- UniProtKB:	A0A0D9RRD0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000011169 ⟸ ENSCSAT00000013161

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000015067	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000013161.1	UniProtKB/TrEMBL
InterPro	TCTA	UniProtKB/TrEMBL
KEGG Report	csab:103227631	UniProtKB/TrEMBL
NCBI Gene	TCTA	ENTREZGENE
PANTHER	PTHR32267	UniProtKB/TrEMBL
	T-CELL LEUKEMIA TRANSLOCATION-ALTERED GENE PROTEIN	UniProtKB/TrEMBL
Pfam	T_cell_tran_alt	UniProtKB/TrEMBL
PIRSF	TCTA	UniProtKB/TrEMBL
UniProt	A0A0D9RRD0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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