Tcta (T cell leukemia translocation altered) - Rat Genome Database

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Gene: Tcta (T cell leukemia translocation altered) Chinchilla lanigera
Analyze
Symbol: Tcta
Name: T cell leukemia translocation altered
RGD ID: 9039022
Description: INVOLVED IN negative regulation of osteoclast differentiation (ortholog); osteoclast fusion (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); genetic disease (ortholog); glycine encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell leukemia translocation altered; T-cell leukemia translocation-altered gene protein homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,347,639 - 1,349,864 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,347,639 - 1,349,864 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Tcta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,347,639 - 1,349,864 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,347,639 - 1,349,864 (+)NCBIChiLan1.0ChiLan1.0
TCTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,412,423 - 49,416,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,412,212 - 49,416,476 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,449,856 - 49,453,909 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,424,643 - 49,428,913 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,424,642 - 49,428,912NCBI
Celera349,414,426 - 49,418,696 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,509,361 - 49,513,631 (+)NCBIHuRef
CHM1_1349,402,406 - 49,406,676 (+)NCBICHM1_1
T2T-CHM13v2.0349,441,802 - 49,445,855 (+)NCBIT2T-CHM13v2.0
Tcta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,180,157 - 108,183,174 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,180,157 - 108,183,359 (-)EnsemblGRCm39 Ensembl
GRCm389108,302,955 - 108,306,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,302,958 - 108,306,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,205,289 - 108,208,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,161,051 - 108,164,044 (-)NCBIMGSCv36mm8
Celera9107,912,001 - 107,914,995 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.2NCBI
Tcta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,867,153 - 117,871,132 (-)NCBIGRCr8
mRatBN7.28108,988,588 - 108,992,324 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,988,590 - 108,991,564 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,615,748 - 114,618,708 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,815,072 - 112,818,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,657,711 - 110,660,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,079,094 - 117,082,338 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,079,095 - 117,082,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,427,898 - 116,431,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,291,610 - 108,294,678 (-)NCBICelera
Cytogenetic Map8q32NCBI
TCTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,394,560 - 49,398,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,399,352 - 49,403,426 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,340,010 - 49,344,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,584,614 - 50,588,891 (+)NCBIpanpan1.1PanPan1.1panPan2
TCTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,820,845 - 39,824,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,822,211 - 39,824,200 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,739,296 - 39,742,977 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,177,073 - 40,180,753 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,177,073 - 40,180,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,544,617 - 39,548,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,948,238 - 39,951,919 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,227,822 - 40,231,502 (-)NCBIUU_Cfam_GSD_1.0
Tcta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,285,293 - 64,288,579 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,045,798 - 1,050,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,045,735 - 1,047,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,991,610 - 31,998,129 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,991,408 - 31,995,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TCTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,809,342 - 10,813,655 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,809,595 - 10,812,029 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,200,733 - 156,205,008 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,362,039 - 3,364,301 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,362,037 - 3,365,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013418   ⟹   ENSCLAP00000013266
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555321,347,639 - 1,349,864 (+)Ensembl
RefSeq Acc Id: XM_005410197   ⟹   XP_005410254
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,347,639 - 1,349,864 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013266
  ENSCLAP00000013266.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410254   ⟸   XM_005410197
- UniProtKB: A0A8C2VFJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013266   ⟸   ENSCLAT00000013418


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009163 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013418 ENTREZGENE
  ENSCLAT00000013418.1 UniProtKB/TrEMBL
InterPro TCTA UniProtKB/TrEMBL
NCBI Gene Tcta ENTREZGENE
PANTHER PTHR32267 UniProtKB/TrEMBL
  T-CELL LEUKEMIA TRANSLOCATION-ALTERED GENE PROTEIN UniProtKB/TrEMBL
Pfam T_cell_tran_alt UniProtKB/TrEMBL
PIRSF TCTA UniProtKB/TrEMBL
UniProt A0A8C2VFJ7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 Tcta  T cell leukemia translocation altered    T-cell leukemia translocation altered  Symbol and/or name change 5135510 APPROVED