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Gene: Aldh1a1 (aldehyde dehydrogenase 1 family member A1) Ictidomys tridecemlineatus

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Symbol:

Aldh1a1

Name:

aldehyde dehydrogenase 1 family member A1

RGD ID:

12578952

Description:

ENCODES a protein that exhibits 3-chloroallyl aldehyde dehydrogenase activity (ortholog); aldehyde dehydrogenase (NAD+) activity (ortholog); aminobutyraldehyde dehydrogenase (NAD+) activity (ortholog); INVOLVED IN 9-cis-retinoic acid biosynthetic process (ortholog); 9-cis-retinoic acid metabolic process (ortholog); apoptotic process (ortholog); PARTICIPATES IN cyclophosphamide pharmacodynamics pathway; cyclophosphamide pharmacokinetics pathway; ifosfamide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Creutzfeldt-Jakob disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN axon (ortholog); synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retinal dehydrogenase 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	132,159,211 - 132,303,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936503	8,868,961 - 8,918,532 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936503	8,869,073 - 8,953,726 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	oral squamous cell carcinoma		ISO	ALDH1A1 (Homo sapiens)	9068941	protein:increased expression:oral epithelium	RGD	PMID:30981761 and REF_RGD_ID:597538586
Aldh1a1	Squirrel	pancreatic cancer		ISO	ALDH1A1 (Homo sapiens)	9068941	protein:decreased expression:pancreas	RGD	PMID:19216797 and REF_RGD_ID:2325688

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	autism spectrum disorder		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:35663546
Aldh1a1	Squirrel	Creutzfeldt-Jakob disease		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:23349890
Aldh1a1	Squirrel	Experimental Liver Cirrhosis		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:17072980
Aldh1a1	Squirrel	liver disease		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:31651977
Aldh1a1	Squirrel	melanoma		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:31580832
Aldh1a1	Squirrel	metabolic dysfunction-associated steatotic liver disease		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29718361
Aldh1a1	Squirrel	Neoplastic Cell Transformation		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:26783756 and PMID:29626521
Aldh1a1	Squirrel	Parkinsonism		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:25045800
Aldh1a1	Squirrel	renal cell carcinoma		ISO	ALDH1A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15108329

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	9-cis-retinoic acid biosynthetic process	acts_upstream_of_or_within	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:11876656	MGI	PMID:11876656
Aldh1a1	Squirrel	9-cis-retinoic acid metabolic process		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:17167544 and REF_RGD_ID:2306320
Aldh1a1	Squirrel	apoptotic process	acts_upstream_of	ISO	MGI:1861722	9068941	PMID:16207763 and PMID:16611695	MGI	PMID:16207763 and PMID:16611695
Aldh1a1	Squirrel	cellular detoxification of aldehyde	involved_in	IEA	UniProtKB:P00352 and ensembl:ENSP00000297785	150520179		Ensembl	GO_REF:0000107
Aldh1a1	Squirrel	embryonic eye morphogenesis	acts_upstream_of_or_within	ISO	MGI:1861722	9068941	PMID:16207763 and PMID:16611695	MGI	PMID:16207763 and PMID:16611695
Aldh1a1	Squirrel	estrous cycle		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:18202528 and REF_RGD_ID:2306318
Aldh1a1	Squirrel	fructosamine catabolic process	involved_in	IEA	UniProtKB:P00352 and ensembl:ENSP00000297785	150520179		Ensembl	GO_REF:0000107
Aldh1a1	Squirrel	fructose catabolic process	involved_in	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:29414685 and PMID:4343087	MGI	PMID:29414685 and PMID:4343087
Aldh1a1	Squirrel	gamma-aminobutyric acid biosynthetic process	involved_in	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:26430123	UniProt	PMID:26430123
Aldh1a1	Squirrel	kidney development		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:15567713 and REF_RGD_ID:2306322
Aldh1a1	Squirrel	liver development		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:14729401 and REF_RGD_ID:1643117
Aldh1a1	Squirrel	maintenance of lens transparency	involved_in	ISO	Aldh1a1 (Rattus norvegicus)	9068941	PMID:15623782	UniProt	PMID:15623782 and REF_RGD_ID:2306321
Aldh1a1	Squirrel	midgut development		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:15964596 and REF_RGD_ID:1643113
Aldh1a1	Squirrel	negative regulation of cold-induced thermogenesis	involved_in	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:22561685	YuBioLab	PMID:22561685
Aldh1a1	Squirrel	optic cup morphogenesis involved in camera-type eye development	acts_upstream_of_or_within	ISO	MGI:1861722	9068941	PMID:16611695	MGI	PMID:16611695
Aldh1a1	Squirrel	positive regulation of apoptotic process	acts_upstream_of_or_within	ISO	MGI:1861722	9068941	PMID:16207763 and PMID:16611695	MGI	PMID:16207763 and PMID:16611695
Aldh1a1	Squirrel	response to estradiol		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:18202528 and REF_RGD_ID:2306318
Aldh1a1	Squirrel	response to ethanol		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:17673211 and REF_RGD_ID:2306319
Aldh1a1	Squirrel	response to oxidative stress		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:15623782 and REF_RGD_ID:2306321
Aldh1a1	Squirrel	response to retinoic acid		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:11169459 and REF_RGD_ID:2306337
Aldh1a1	Squirrel	response to xenobiotic stimulus		ISO	Aldh1a1 (Rattus norvegicus)	9068941	phenobarbital	RGD	PMID:10323328 and REF_RGD_ID:2306338
Aldh1a1	Squirrel	response to xenobiotic stimulus	acts_upstream_of_or_within	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:18971422	MGI	PMID:18971422
Aldh1a1	Squirrel	retinoic acid biosynthetic process		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:21138835 and REF_RGD_ID:6771354
Aldh1a1	Squirrel	retinoic acid metabolic process	acts_upstream_of_or_within	ISO	MGI:3609477	9068941	PMID:16207763	MGI	PMID:16207763
Aldh1a1	Squirrel	retinoic acid metabolic process	acts_upstream_of_or_within	ISO	MGI:2667220	9068941	PMID:12808103 and PMID:12851412	MGI	PMID:12808103 and PMID:12851412
Aldh1a1	Squirrel	retinoic acid metabolic process	acts_upstream_of_or_within	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:10191271	MGI	PMID:10191271
Aldh1a1	Squirrel	retinoic acid metabolic process	acts_upstream_of_or_within	ISO	MGI:1861722	9068941	PMID:16207763	MGI	PMID:16207763
Aldh1a1	Squirrel	retinoid metabolic process	involved_in	ISO	Aldh1a1 (Rattus norvegicus)	9068941	PMID:7832787	UniProt	PMID:7832787 and REF_RGD_ID:11558002
Aldh1a1	Squirrel	retinol metabolic process	acts_upstream_of_or_within	ISO	MGI:2667220	9068941	PMID:12851412	MGI	PMID:12851412

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	axon	located_in	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:26430123	UniProt	PMID:26430123
Aldh1a1	Squirrel	cytosol	located_in	IEA	UniProtKB:P00352 more ...	150520179		Ensembl	GO_REF:0000107
Aldh1a1	Squirrel	synapse	located_in	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:26430123	UniProt	PMID:26430123

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	3-chloroallyl aldehyde dehydrogenase activity	enables	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:12610736	MGI	PMID:12610736
Aldh1a1	Squirrel	3-deoxyglucosone dehydrogenase activity	enables	IEA	UniProtKB:P00352 and ensembl:ENSP00000297785	150520179		Ensembl	GO_REF:0000107
Aldh1a1	Squirrel	aldehyde dehydrogenase (NAD+) activity		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:10998257 and REF_RGD_ID:2306339
Aldh1a1	Squirrel	aldehyde dehydrogenase (NAD+) activity	enables	IEA	UniProtKB:P00352 and ensembl:ENSP00000297785	150520179		Ensembl	GO_REF:0000107
Aldh1a1	Squirrel	aminobutyraldehyde dehydrogenase (NAD+) activity	enables	ISO	Aldh1a1 (Mus musculus)	9068941	PMID:26430123	UniProt	PMID:26430123
Aldh1a1	Squirrel	benzaldehyde dehydrogenase (NAD+) activity		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:10998257 and REF_RGD_ID:2306339
Aldh1a1	Squirrel	identical protein binding		ISO	Aldh1a1 (Rattus norvegicus)	9068941	homotetramerization	RGD	PMID:10998257 and REF_RGD_ID:2306339
Aldh1a1	Squirrel	oxidoreductase activity	enables	IEA	UniProtKB-KW:KW-0560	150520179		UniProt	GO_REF:0000043
Aldh1a1	Squirrel	oxidoreductase activity	enables	IEA	InterPro:IPR015590 more ...	150520179		InterPro	GO_REF:0000002
Aldh1a1	Squirrel	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	enables	IEA	InterPro:IPR016163	150520179		InterPro	GO_REF:0000002
Aldh1a1	Squirrel	protein binding	enables	ISO	UniProtKB:O60678	9068941	PMID:33495566	UniProt	PMID:33495566
Aldh1a1	Squirrel	protein binding	enables	ISO	UniProtKB:P09172 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Aldh1a1	Squirrel	retinal dehydrogenase activity		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:17167544 and REF_RGD_ID:2306320
Aldh1a1	Squirrel	retinal dehydrogenase activity	enables	ISO	Aldh1a1 (Rattus norvegicus)	9068941	PMID:7832787	UniProt	PMID:7832787 and REF_RGD_ID:11558002

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	retinoic acid metabolic pathway		ISO	Aldh1a1 (Mus musculus)	9068941		RGD	PMID:21621639 and REF_RGD_ID:6484672
Aldh1a1	Squirrel	retinoic acid metabolic pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		RGD	PMID:21621639 and REF_RGD_ID:6484672
Aldh1a1	Squirrel	retinoic acid metabolic pathway		ISO	Aldh1a1 (Rattus norvegicus)	9068941		RGD	PMID:21138835 more ...

Imported Annotations - SMPDB

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Aldh1a1	Squirrel	cyclophosphamide pharmacodynamics pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00447
Aldh1a1	Squirrel	cyclophosphamide pharmacokinetics pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00604
Aldh1a1	Squirrel	ifosfamide pharmacodynamics pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00448
Aldh1a1	Squirrel	ifosfamide pharmacokinetics pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00605
Aldh1a1	Squirrel	neviparine pharmacokinetics pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00642
Aldh1a1	Squirrel	retinol metabolic pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00074
Aldh1a1	Squirrel	vitamin A deficiency pathway		ISO	ALDH1A1 (Homo sapiens)	9068941		SMPDB	SMP:00336

PMID:30032202

Aldh1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	132,159,211 - 132,303,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936503	8,868,961 - 8,918,532 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936503	8,869,073 - 8,953,726 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALDH1A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	72,900,671 - 72,953,053 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	72,900,671 - 73,080,442 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	75,515,587 - 75,567,969 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	74,705,407 - 74,757,789 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	72,745,141 - 72,797,523	NCBI
Celera	9	46,088,447 - 46,140,830 (-)	NCBI		Celera
Cytogenetic Map	9	q21.13	NCBI
HuRef	9	45,338,144 - 45,390,773 (-)	NCBI		HuRef
CHM1_1	9	75,662,616 - 75,715,255 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	85,051,589 - 85,103,957 (-)	NCBI		T2T-CHM13v2.0

Aldh1a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	20,469,947 - 20,620,827 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	20,470,079 - 20,620,829 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	20,492,583 - 20,643,463 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	20,492,715 - 20,643,465 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	20,676,472 - 20,717,952 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	20,669,079 - 20,710,559 (+)	NCBI		MGSCv36	mm8
Celera	19	21,323,202 - 21,366,435 (+)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	13.91	NCBI

Aldh1a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	227,426,939 - 227,579,497 (+)	NCBI		GRCr8
mRatBN7.2	1	218,000,470 - 218,152,962 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	218,042,127 - 218,152,961 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	226,448,507 - 226,490,531 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	233,385,074 - 233,427,098 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	226,203,095 - 226,245,121 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	238,222,689 - 238,264,381 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	238,222,521 - 238,264,330 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	245,340,587 - 245,562,970 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	223,731,675 - 223,773,285 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	223,895,697 - 223,937,307 (+)	NCBI
Celera	1	215,379,207 - 215,421,068 (+)	NCBI		Celera
Cytogenetic Map	1	q51	NCBI

ALDH1A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	72,085,972 - 72,265,332 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	72,091,914 - 72,271,273 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	51,737,305 - 51,916,648 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	71,680,352 - 71,859,144 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	71,680,890 - 71,814,085 (-)	Ensembl	panpan1.1		panPan2

ALDH1A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	84,940,411 - 84,994,789 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	84,940,411 - 84,994,789 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	85,406,217 - 85,460,597 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	85,390,369 - 85,444,756 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	85,390,360 - 85,444,756 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	85,159,477 - 85,213,817 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	84,862,384 - 84,917,606 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	85,621,439 - 85,676,732 (+)	NCBI		UU_Cfam_GSD_1.0

ALDH1A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	226,161,299 - 226,217,308 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	226,163,347 - 226,217,342 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	252,778,605 - 252,808,516 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALDH1A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	83,949,529 - 84,092,452 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	83,949,399 - 84,009,003 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	72,378,038 - 72,569,020 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aldh1a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624811	505,101 - 563,855 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624811	505,297 - 563,795 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021725627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000003291 ⟹ ENSSTOP00000002943

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936503	8,868,961 - 8,918,532 (-)	Ensembl

RefSeq Acc Id:

XM_021725627 ⟹ XP_021581302

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	132,215,802 - 132,303,931 (+)	NCBI
SpeTri2.0	NW_004936503	8,869,073 - 8,953,726 (-)	NCBI

Sequence:

show sequence

AAAAACAACAGGAAGACCTTTACCAAAAAAAAATCACTTAGAAAAATTACTCAATGGAAAACCACAAGACTGAGAATGACATCTCCACCGGTACTTGCTGTGCAGCTCCGGATGCTCCACTTGAGCAG
GGAGCCGAACCAGAAATGTTGTCCTCAGCAGTGCCAGAGTTACCTGTCCCACTCACCAATTTGAAGATTCAATATACTAAGATCTTCATAAACAATGAATGGCATGATTCAGTGAGTGGCAAGAAATT
TCCTGTCTTAAATCCTGCGACTGAGGAGAAAATCTGTGAGATAGAAGAAGGAGATAAGGCAGACGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTTCAGATTGGCTCTCCATGGCGCACTATGG
ATGCTTCAGAGAGGGGACGCCTACTATACAAGTTGGCCGACTTAATTGAAAGAGATCGTCTGCTGCTGGCCACAATGGAGTCAATGAATGCTGGAAAACTGTTTTCTAATGCGTATCTGATGGATCTA
GGAGGCTGCATAAAAACATTACGCTACTGTGCAGGCTGGGCTGACAAGGTCCAGGGCCGTACCATACCGATTGATGGAGACTTTTTCACTTATACAAGACATGAACCTATTGGTGTATGTGGCCAAAT
CATTCCTTGGAATTTCCCATTGGTCATGCTCATTTGGAAGATAGGGCCTGCCCTTAGCTGTGGAAACACGGTGATTGTCAAACCAGCAGAACAAACTCCCCTTACTGCTCTTCATGTGGCATCTTTGA
TAAAAGAGGCAGGGTTTCCTCCTGGAGTAGTGAATATTGTCCCTGGCTATGGGCCTACAGCAGGGGCAGCCATCTCTTCTCACATGGATATTGACAAAGTGGCCTTCACAGGATCCACAGAGGTTGGC
AAGATGATCAAAGAAGCTGCAGGGAAAAGCAATCTGAAGAGGGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCCGACGCCGACTTGGCCAGTGCTGTTGAATTTGCACATCAAGG
CTTATTCTACCATCAGGGCCAGTGCTGTGTAGCTGCATCCCGGCTTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTAAAAGAAGTGTTGAGCGGGCTAAGAAATATGTACTTGGAAATCCTCTGA
CCCCAGGAGTAAATCAAGGCCCTCAGATTGACAAGGAACAGTATGATAAAATACTTGACCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAATGTGGAGGAGGCCCCTGGGGGAATAAAGGC
TACTTTGTCCAGCCCACAGTTTTCTCTAATGTTACAGATGAGATGCGCATCGCCAAAGAGGAGATATTTGGACCTGTGCAACAAATCATGAAGTTTAAATCTTTAGATGATGTGATCAAGAGAGCAAA
CAATACTCTCTATGGCTTATCAGCAGGAATCTTTACCAAAGATCTTAATAAAGCCATAACTGTCTCCTCCGCTCTACAGGCAGGGACCGTGTGGGTAAATTGCTACAGTGTGGTATCTGCTCAGTGCC
CCTTTGGGGGATTCAAGATGTCTGGAAATGGACGAGAACTGGGAGAATACGGTCTCCATGAATACACAGAAGTCAAGACAGTCACCATGAAGATCTCTCAGAAGAATTCGTAAAGATACACCAGAATG
GACAGAACACTTTTCAACGACTAAGCATCTCCTATAATCACTACTATGTGGGGTCTAAATAGAAAAATGTTCTTTTTTTGATTTTTTTTAAACATAAGCTAATCACCTTAGTATTAATACTGCACATA
GAAAGCTTGACATGTAGCTTATTCTGAAGGAATAACTTGATTTTTGTTATGTGACTCCCAAGTCCTATCCTAAATAAAAAGGATGGACTTGGATGTAAGATCTCTGACTCTGTGGTAGTCATGTAGTT
TTCTTTGTAGCTACTGGTCCAGAATAATCATTTTACAGAAGACAAGCAGTAGTCGTGTAGCCTCTTTCCCCTAATGACTCCCTGAAGTACTTAATATACATGCTAACTGCAGAGTAAGTTGCTCTGTT
CCTGGTAGGTATGAAGTCCTTTTTTGTGTTTTCTAGAATGTTATGTCAGCTTGTCAAATAAAATACATAGGTGTAATCTGCATATAAAGCTTAATAAAAAATGACCTTGCATGAATCTTA

hide sequence

RefSeq Acc Id:

XM_040285665 ⟹ XP_040141599

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	132,159,212 - 132,303,931 (+)	NCBI

RefSeq Acc Id:

XM_040285666 ⟹ XP_040141600

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	132,159,212 - 132,303,931 (+)	NCBI

RefSeq Acc Id:

XM_040285667 ⟹ XP_040141601

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	132,215,802 - 132,303,931 (+)	NCBI

RefSeq Acc Id:

XM_040285668 ⟹ XP_040141602

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	132,159,211 - 132,303,931 (+)	NCBI


Protein RefSeqs	XP_021581302	(Get FASTA)	NCBI Sequence Viewer
	XP_040141599	(Get FASTA)	NCBI Sequence Viewer
	XP_040141600	(Get FASTA)	NCBI Sequence Viewer
	XP_040141601	(Get FASTA)	NCBI Sequence Viewer
	XP_040141602	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002943.2
GenBank Protein	KAG3287107	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021581302 ⟸ XM_021725627

- Peptide Label:

isoform X1

- Sequence:

show sequence

MENHKTENDISTGTCCAAPDAPLEQGAEPEMLSSAVPELPVPLTNLKIQYTKIFINNEWHDSVSGKKFPVLNPATEEKICEIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIER
DRLLLATMESMNAGKLFSNAYLMDLGGCIKTLRYCAGWADKVQGRTIPIDGDFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYG
PTAGAAISSHMDIDKVAFTGSTEVGKMIKEAAGKSNLKRVTLELGGKSPCIVFADADLASAVEFAHQGLFYHQGQCCVAASRLFVEESIYDEFVKRSVERAKKYVLGNPLTPGVNQGPQIDKEQYDKI
LDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTLYGLSAGIFTKDLNKAITVSSALQAGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYG
LHEYTEVKTVTMKISQKNS

hide sequence

RefSeq Acc Id:	XP_040141602 ⟸ XM_040285668
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040141599 ⟸ XM_040285665
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040141600 ⟸ XM_040285666
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040141601 ⟸ XM_040285667
- Peptide Label:	isoform X3

Protein Domains

Aldehyde dehydrogenase

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003287	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003291.3	UniProtKB/TrEMBL
Gene3D-CATH	Aldehyde Dehydrogenase, Chain A, domain 1	UniProtKB/TrEMBL
	Aldehyde Dehydrogenase, Chain A, domain 2	UniProtKB/TrEMBL
InterPro	Ald_DH/histidinol_DH	UniProtKB/TrEMBL
	Ald_DH_C	UniProtKB/TrEMBL
	Ald_DH_CS_CYS	UniProtKB/TrEMBL
	Ald_DH_CS_GLU	UniProtKB/TrEMBL
	Ald_DH_N	UniProtKB/TrEMBL
	Aldehyde_DH_dom	UniProtKB/TrEMBL
NCBI Gene	Aldh1a1	ENTREZGENE
PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	UniProtKB/TrEMBL
Pfam	Aldedh	UniProtKB/TrEMBL
PROSITE	ALDEHYDE_DEHYDR_CYS	UniProtKB/TrEMBL
	ALDEHYDE_DEHYDR_GLU	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53720	UniProtKB/TrEMBL
UniProt	I3M206_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - SMPDB