Symbol:
Slc22a1
Name:
solute carrier family 22 member 1
RGD ID:
12555805
Description:
ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); dopamine:sodium symporter activity (ortholog); identical protein binding (ortholog); INVOLVED IN dopamine transport (ortholog); epinephrine transport (ortholog); establishment or maintenance of transmembrane electrochemical gradient (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; metformin pharmacokinetics pathway; tramadol pharmacokinetics pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); acute kidney failure (ortholog); asthma (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
solute carrier family 22 member 1, transcript variant X1; solute carrier family 22 member 1, transcript variant X2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404946 144,281,749 - 144,305,075 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936489 11,534,095 - 11,556,745 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936489 11,534,095 - 11,556,759 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - SMPDB
Slc22a1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404946 144,281,749 - 144,305,075 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936489 11,534,095 - 11,556,745 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936489 11,534,095 - 11,556,759 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SLC22A1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 160,121,815 - 160,158,718 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 160,121,815 - 160,158,718 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 160,542,847 - 160,579,750 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 160,462,853 - 160,499,740 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 160,513,273 - 160,550,159 NCBI Celera 6 161,188,634 - 161,224,539 (+) NCBI Celera Cytogenetic Map 6 q25.3 NCBI HuRef 6 158,013,550 - 158,049,540 (+) NCBI HuRef CHM1_1 6 160,805,108 - 160,841,995 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 161,367,910 - 161,404,908 (+) NCBI T2T-CHM13v2.0
Slc22a1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 12,867,761 - 12,894,725 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 12,867,756 - 12,894,716 (-) Ensembl GRCm39 Ensembl GRCm38 17 12,648,874 - 12,675,838 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 12,648,869 - 12,675,829 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 17 12,841,740 - 12,868,704 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 17 12,492,232 - 12,519,196 (-) NCBI MGSCv36 mm8 Celera 17 12,680,587 - 12,707,864 (-) NCBI Celera Cytogenetic Map 17 A1 NCBI cM Map 17 8.63 NCBI
Slc22a1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 50,624,339 - 50,651,437 (+) NCBI GRCr8 mRatBN7.2 1 48,076,657 - 48,103,679 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 48,076,666 - 48,103,678 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 48,768,287 - 48,795,288 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 54,754,091 - 54,781,071 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 48,843,810 - 48,870,799 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 48,273,639 - 48,300,645 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 48,273,611 - 48,300,655 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 51,452,604 - 51,479,610 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 42,351,239 - 42,378,295 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 42,354,183 - 42,381,239 (+) NCBI Celera 1 43,876,335 - 43,903,290 (+) NCBI Celera Cytogenetic Map 1 q11 NCBI
SLC22A1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 180,216,337 - 180,263,051 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 178,125,295 - 178,169,671 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 158,004,545 - 158,046,428 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 163,014,522 - 163,054,818 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 163,014,663 - 163,054,681 (+) Ensembl panpan1.1 panPan2
SLC22A1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 49,268,978 - 49,296,522 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 50,109,085 - 50,138,635 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 49,451,887 - 49,481,466 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 49,451,182 - 49,482,182 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 49,334,247 - 49,363,803 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 49,205,883 - 49,235,453 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 49,820,796 - 49,850,348 (+) NCBI UU_Cfam_GSD_1.0
SLC22A1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 7,340,126 - 7,365,520 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 1 7,340,442 - 7,365,543 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 9,139,435 - 9,164,369 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SLC22A1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 13 87,744,600 - 87,780,846 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 13 87,745,023 - 87,781,073 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666040 60,132,123 - 60,167,647 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000009021 ⟹ ENSSTOP00000008083
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936489 11,534,095 - 11,556,745 (+) Ensembl
RefSeq Acc Id:
XM_005321424 ⟹ XP_005321481
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404946 144,281,751 - 144,305,075 (+) NCBI SpeTri2.0 NW_004936489 11,534,095 - 11,556,759 (+) NCBI
Sequence:
ATGCCCACCGTGGACGATGTCCTAGAGCAGGTTGGGGAGTTTGGCTGGTACCAGAAGCGAGTCTTCCTCACACTATGCCTCACCTCGGCGGCCTTAGCCCCCATCTACCTGGGCATCGTCTTCCTGGG
hide sequence
RefSeq Acc Id:
XM_040283518 ⟹ XP_040139452
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404946 144,281,749 - 144,305,075 (+) NCBI
RefSeq Acc Id:
XM_040283519 ⟹ XP_040139453
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404946 144,281,749 - 144,305,075 (+) NCBI
RefSeq Acc Id:
XP_005321481 ⟸ XM_005321424
- Peptide Label:
isoform X1
- UniProtKB:
I3MCS5 (UniProtKB/TrEMBL)
- Sequence:
MPTVDDVLEQVGEFGWYQKRVFLTLCLTSAALAPIYLGIVFLGFSPPHHCRSPGVSELSQRCGWSPAEELNYTVPGLGAADEAFLRQCMQYEVDWNQSTLGCVDPLASLAANRSHLPLVPCQHGWVYD
hide sequence
RefSeq Acc Id:
XP_040139452 ⟸ XM_040283518
- Peptide Label:
isoform X2
- UniProtKB:
I3MCS5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_040139453 ⟸ XM_040283519
- Peptide Label:
isoform X3
- UniProtKB:
I3MCS5 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSSTOP00000008083 ⟸ ENSSTOT00000009021
