UPP1 (uridine phosphorylase 1) - Rat Genome Database

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Gene: UPP1 (uridine phosphorylase 1) Canis lupus familiaris
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Symbol: UPP1
Name: uridine phosphorylase 1
RGD ID: 12395891
Description: ENCODES a protein that exhibits deoxyuridine phosphorylase activity (ortholog); identical protein binding (ortholog); thymidine phosphorylase activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); CMP catabolic process (ortholog); dCMP catabolic process (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); long QT syndrome (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100856638; LOW QUALITY PROTEIN: uridine phosphorylase 1; uridine phosphorylase 1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.118108,215 - 120,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1867,812 - 89,151 (+)NCBI
ROS_Cfam_1.018133,593 - 154,855 (+)NCBI
UMICH_Zoey_3.118108,433 - 129,715 (+)NCBI
UNSW_CanFamBas_1.018111,361 - 132,570 (+)NCBI
UU_Cfam_GSD_1.018246,479 - 267,730 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
UPP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.118108,215 - 120,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1867,812 - 89,151 (+)NCBI
ROS_Cfam_1.018133,593 - 154,855 (+)NCBI
UMICH_Zoey_3.118108,433 - 129,715 (+)NCBI
UNSW_CanFamBas_1.018111,361 - 132,570 (+)NCBI
UU_Cfam_GSD_1.018246,479 - 267,730 (+)NCBI
UPP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl748,088,628 - 48,108,736 (+)EnsemblGRCh38hg38GRCh38
GRCh38748,088,308 - 48,108,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37748,128,301 - 48,148,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36748,094,880 - 48,114,855 (+)NCBINCBI36hg18NCBI36
Celera748,227,538 - 48,247,515 (+)NCBI
Cytogenetic Map7p12.3NCBI
HuRef748,013,948 - 48,033,924 (+)NCBIHuRef
CHM1_1748,131,900 - 48,152,030 (+)NCBICHM1_1
CRA_TCAGchr7v2748,168,224 - 48,188,201 (+)NCBI
Upp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39119,068,008 - 9,086,170 (+)NCBIGRCm39mm39
GRCm39 Ensembl119,068,103 - 9,086,170 (+)Ensembl
GRCm38119,118,008 - 9,136,170 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl119,118,103 - 9,136,170 (+)EnsemblGRCm38mm10GRCm38
MGSCv37119,018,011 - 9,036,173 (+)NCBIGRCm37mm9NCBIm37
MGSCv36119,018,106 - 9,036,167 (+)NCBImm8
Celera119,551,715 - 9,569,878 (+)NCBICelera
Cytogenetic Map11A1NCBI
Upp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21483,809,495 - 83,829,299 (+)NCBI
Rnor_6.0 Ensembl1489,314,176 - 89,334,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01489,314,234 - 89,334,060 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01489,112,302 - 89,132,102 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,651,264 - 89,669,630 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11489,669,068 - 89,688,775 (+)NCBI
Celera1482,846,265 - 82,864,631 (+)NCBICelera
Cytogenetic Map14q21NCBI
Upp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554565,365,877 - 5,385,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554565,365,912 - 5,385,336 (-)NCBIChiLan1.0ChiLan1.0
UPP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1748,838,901 - 48,858,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,838,893 - 48,858,185 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0748,729,975 - 48,749,598 (+)NCBIMhudiblu_PPA_v0panPan3
Upp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,296,840 - 103,319,396 (+)NCBI
SpeTri2.0NW_00493647822,508,602 - 22,531,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,418,385 - 48,440,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,418,385 - 48,440,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UPP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12110,686,600 - 10,707,181 (-)NCBI
ChlSab1.1 Ensembl2110,686,093 - 10,706,347 (-)Ensembl
Upp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247405,517,387 - 5,531,594 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022405143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038423597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038562552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_022405143   ⟹   XP_022260851
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.118108,215 - 120,213 (+)NCBI
Dog10K_Boxer_Tasha1877,343 - 89,151 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038423592   ⟹   XP_038279520
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.018142,875 - 154,855 (+)NCBI
RefSeq Acc Id: XM_038423593   ⟹   XP_038279521
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.018135,473 - 154,855 (+)NCBI
RefSeq Acc Id: XM_038423594   ⟹   XP_038279522
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.018133,615 - 154,855 (+)NCBI
RefSeq Acc Id: XM_038423595   ⟹   XP_038279523
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.018143,087 - 154,855 (+)NCBI
RefSeq Acc Id: XM_038423597   ⟹   XP_038279525
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.018133,593 - 154,855 (+)NCBI
RefSeq Acc Id: XM_038454116   ⟹   XP_038310044
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1877,131 - 89,151 (+)NCBI
RefSeq Acc Id: XM_038454117   ⟹   XP_038310045
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1869,734 - 89,151 (+)NCBI
RefSeq Acc Id: XM_038454118   ⟹   XP_038310046
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1867,834 - 89,151 (+)NCBI
RefSeq Acc Id: XM_038454119   ⟹   XP_038310047
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1867,812 - 89,151 (+)NCBI
RefSeq Acc Id: XM_038499963   ⟹   XP_038355891
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.118108,433 - 129,715 (+)NCBI
RefSeq Acc Id: XM_038562548   ⟹   XP_038418476
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.018255,746 - 267,730 (+)NCBI
RefSeq Acc Id: XM_038562549   ⟹   XP_038418477
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.018248,352 - 267,730 (+)NCBI
RefSeq Acc Id: XM_038562550   ⟹   XP_038418478
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.018246,501 - 267,730 (+)NCBI
RefSeq Acc Id: XM_038562551   ⟹   XP_038418479
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.018255,958 - 267,730 (+)NCBI
RefSeq Acc Id: XM_038562552   ⟹   XP_038418480
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.018246,479 - 267,730 (+)NCBI
RefSeq Acc Id: XM_038626639   ⟹   XP_038482567
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.018120,606 - 132,570 (+)NCBI
RefSeq Acc Id: XM_038626640   ⟹   XP_038482568
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.018113,212 - 132,570 (+)NCBI
RefSeq Acc Id: XM_038626641   ⟹   XP_038482569
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.018111,383 - 132,570 (+)NCBI
RefSeq Acc Id: XM_038626642   ⟹   XP_038482570
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.018120,818 - 132,570 (+)NCBI
RefSeq Acc Id: XM_038626643   ⟹   XP_038482571
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.018111,361 - 132,570 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_022260851   ⟸   XM_022405143
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_038355891   ⟸   XM_038499963
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038482571   ⟸   XM_038626643
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038482569   ⟸   XM_038626641
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038482568   ⟸   XM_038626640
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038482567   ⟸   XM_038626639
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038482570   ⟸   XM_038626642
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038279525   ⟸   XM_038423597
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038279522   ⟸   XM_038423594
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038279521   ⟸   XM_038423593
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038279520   ⟸   XM_038423592
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038279523   ⟸   XM_038423595
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038310047   ⟸   XM_038454119
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038310046   ⟸   XM_038454118
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038310045   ⟸   XM_038454117
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038310044   ⟸   XM_038454116
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038418480   ⟸   XM_038562552
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038418478   ⟸   XM_038562550
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038418477   ⟸   XM_038562549
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038418476   ⟸   XM_038562548
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038418479   ⟸   XM_038562551
- Peptide Label: isoform X3
Protein Domains
PNP_UDP_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032173 UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000041577 UniProtKB/TrEMBL
  ENSCAFP00000045230 UniProtKB/TrEMBL
  ENSCAFP00000056793 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044370 UniProtKB/TrEMBL
  ENSCAFT00000089813 UniProtKB/TrEMBL
  ENSCAFT00000093268 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1580 UniProtKB/TrEMBL
InterPro Nucleoside_phosphorylase_d UniProtKB/TrEMBL
  Nucleoside_phosphorylase_sf UniProtKB/TrEMBL
  Uridine_phosphorylase_euk UniProtKB/TrEMBL
NCBI Gene UPP1 ENTREZGENE
Pfam PNP_UDP_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53167 UniProtKB/TrEMBL
TIGRFAMs euk_UDPppase UniProtKB/TrEMBL
UniProt A0A5F4BUZ5_CANLF UniProtKB/TrEMBL
  A0A5F4CVK3_CANLF UniProtKB/TrEMBL
  J9P7E0_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 UPP1  uridine phosphorylase 1  LOC100856638  uridine phosphorylase 1-like  Data Merged 737654 PROVISIONAL