Upp1 (uridine phosphorylase 1) - Rat Genome Database

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Gene: Upp1 (uridine phosphorylase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Upp1
Name: uridine phosphorylase 1
RGD ID: 12708711
Description: ENCODES a protein that exhibits thymidine phosphorylase activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); dTMP catabolic process (ortholog); pyrimidine nucleotide metabolic process (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); long QT syndrome (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uridine phosphorylase 1, transcript variant X1; uridine phosphorylase 1, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,296,840 - 103,319,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647822,508,559 - 22,531,898 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647822,508,602 - 22,531,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nucleoplasm  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Upp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,296,840 - 103,319,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647822,508,559 - 22,531,898 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647822,508,602 - 22,531,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38748,088,704 - 48,108,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl748,088,628 - 48,108,736 (+)EnsemblGRCh38hg38GRCh38
GRCh37748,128,301 - 48,148,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36748,094,880 - 48,114,855 (+)NCBINCBI36Build 36hg18NCBI36
Celera748,227,538 - 48,247,515 (+)NCBICelera
Cytogenetic Map7p12.3NCBI
HuRef748,013,948 - 48,033,924 (+)NCBIHuRef
CHM1_1748,132,055 - 48,152,030 (+)NCBICHM1_1
T2T-CHM13v2.0748,250,938 - 48,270,970 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2748,168,224 - 48,188,201 (+)NCBI
Upp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39119,068,008 - 9,086,170 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl119,068,103 - 9,086,170 (+)EnsemblGRCm39 Ensembl
GRCm38119,118,008 - 9,136,170 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl119,118,103 - 9,136,170 (+)EnsemblGRCm38mm10GRCm38
MGSCv37119,018,011 - 9,036,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36119,018,106 - 9,036,167 (+)NCBIMGSCv36mm8
Celera119,551,715 - 9,569,878 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map116.13NCBI
Upp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81488,023,155 - 88,043,036 (+)NCBIGRCr8
mRatBN7.21483,809,495 - 83,829,299 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,809,960 - 83,829,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1488,205,103 - 88,223,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01489,445,021 - 89,463,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01485,912,157 - 85,930,471 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01489,314,234 - 89,334,060 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1489,314,176 - 89,334,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01489,112,302 - 89,132,102 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,651,264 - 89,669,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11489,669,068 - 89,688,775 (+)NCBI
Celera1482,846,265 - 82,864,631 (+)NCBICelera
Cytogenetic Map14q21NCBI
Upp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554565,365,877 - 5,385,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554565,365,912 - 5,385,336 (-)NCBIChiLan1.0ChiLan1.0
UPP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2652,964,340 - 52,983,714 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17101,288,443 - 101,308,447 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0748,729,975 - 48,749,598 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1748,838,901 - 48,858,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,838,893 - 48,858,185 (+)Ensemblpanpan1.1panPan2
UPP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.118108,215 - 120,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1867,812 - 89,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.018133,593 - 154,855 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl18133,673 - 164,752 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.118108,433 - 129,715 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.018111,361 - 132,570 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.018246,479 - 267,730 (+)NCBIUU_Cfam_GSD_1.0
UPP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,418,385 - 48,440,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,418,385 - 48,440,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UPP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12110,686,600 - 10,707,181 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2110,686,093 - 10,706,347 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606211,525,130 - 11,545,495 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Upp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247405,517,387 - 5,531,594 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000005493   ⟹   ENSSTOP00000004914
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647822,508,559 - 22,531,898 (+)Ensembl
RefSeq Acc Id: XM_005319264   ⟹   XP_005319321
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118103,296,840 - 103,319,396 (+)NCBI
SpeTri2.0NW_00493647822,508,602 - 22,531,604 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004914.2
GenBank Protein KAG3278271 (Get FASTA)   NCBI Sequence Viewer  
  KAG3278272 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319321   ⟸   XM_005319264
- UniProtKB: I3M663 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004914   ⟸   ENSSTOT00000005493
Protein Domains
Nucleoside phosphorylase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005502 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005493.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1580 UniProtKB/TrEMBL
InterPro Nucleoside_phosphorylase_CS UniProtKB/TrEMBL
  Nucleoside_phosphorylase_d UniProtKB/TrEMBL
  Nucleoside_phosphorylase_sf UniProtKB/TrEMBL
  Uridine_phosphorylase_euk UniProtKB/TrEMBL
NCBI Gene Upp1 ENTREZGENE
PANTHER URIDINE PHOSPHORYLASE UniProtKB/TrEMBL
  URIDINE PHOSPHORYLASE 1 UniProtKB/TrEMBL
Pfam PNP_UDP_1 UniProtKB/TrEMBL
PROSITE PNP_UDP_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53167 UniProtKB/TrEMBL
UniProt I3M663 ENTREZGENE, UniProtKB/TrEMBL