Upp1 (uridine phosphorylase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Upp1 (uridine phosphorylase 1) Heterocephalus glaber
Analyze
Symbol: Upp1
Name: uridine phosphorylase 1
RGD ID: 18907327
Description: ENCODES a protein that exhibits deoxyuridine phosphorylase activity (ortholog); identical protein binding (ortholog); thymidine phosphorylase activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); CMP catabolic process (ortholog); dCMP catabolic process (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); long QT syndrome (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247405,517,387 - 5,531,594 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Upp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247405,517,387 - 5,531,594 (-)NCBI
UPP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl748,088,628 - 48,108,736 (+)EnsemblGRCh38hg38GRCh38
GRCh38748,088,308 - 48,108,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37748,128,301 - 48,148,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36748,094,880 - 48,114,855 (+)NCBINCBI36hg18NCBI36
Celera748,227,538 - 48,247,515 (+)NCBI
Cytogenetic Map7p12.3NCBI
HuRef748,013,948 - 48,033,924 (+)NCBIHuRef
CHM1_1748,131,900 - 48,152,030 (+)NCBICHM1_1
CRA_TCAGchr7v2748,168,224 - 48,188,201 (+)NCBI
Upp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39119,068,008 - 9,086,170 (+)NCBIGRCm39mm39
GRCm39 Ensembl119,068,103 - 9,086,170 (+)Ensembl
GRCm38119,118,008 - 9,136,170 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl119,118,103 - 9,136,170 (+)EnsemblGRCm38mm10GRCm38
MGSCv37119,018,011 - 9,036,173 (+)NCBIGRCm37mm9NCBIm37
MGSCv36119,018,106 - 9,036,167 (+)NCBImm8
Celera119,551,715 - 9,569,878 (+)NCBICelera
Cytogenetic Map11A1NCBI
Upp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21483,809,495 - 83,829,299 (+)NCBI
Rnor_6.0 Ensembl1489,314,176 - 89,334,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01489,314,234 - 89,334,060 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01489,112,302 - 89,132,102 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41489,651,264 - 89,669,630 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11489,669,068 - 89,688,775 (+)NCBI
Celera1482,846,265 - 82,864,631 (+)NCBICelera
Cytogenetic Map14q21NCBI
Upp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554565,365,877 - 5,385,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554565,365,912 - 5,385,336 (-)NCBIChiLan1.0ChiLan1.0
UPP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1748,838,901 - 48,858,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl748,838,893 - 48,858,185 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0748,729,975 - 48,749,598 (+)NCBIMhudiblu_PPA_v0panPan3
UPP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.118108,215 - 120,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1867,812 - 89,151 (+)NCBI
ROS_Cfam_1.018133,593 - 154,855 (+)NCBI
UMICH_Zoey_3.118108,433 - 129,715 (+)NCBI
UNSW_CanFamBas_1.018111,361 - 132,570 (+)NCBI
UU_Cfam_GSD_1.018246,479 - 267,730 (+)NCBI
Upp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118103,296,840 - 103,319,396 (+)NCBI
SpeTri2.0NW_00493647822,508,602 - 22,531,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,418,385 - 48,440,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,418,385 - 48,440,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UPP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12110,686,600 - 10,707,181 (-)NCBI
ChlSab1.1 Ensembl2110,686,093 - 10,706,347 (-)Ensembl


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004839866   ⟹   XP_004839923
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247405,517,387 - 5,530,789 (-)NCBI
RefSeq Acc Id: XM_004839868   ⟹   XP_004839925
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247405,517,387 - 5,531,198 (-)NCBI
RefSeq Acc Id: XM_004839869   ⟹   XP_004839926
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247405,517,387 - 5,531,594 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839923 (Get FASTA)   NCBI Sequence Viewer  
  XP_004839925 (Get FASTA)   NCBI Sequence Viewer  
  XP_004839926 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB03955 (Get FASTA)   NCBI Sequence Viewer  
  JAO01172 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_004839926   ⟸   XM_004839869
- UniProtKB: A0A0P6K6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839925   ⟸   XM_004839868
- UniProtKB: A0A0P6K6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839923   ⟸   XM_004839866
- UniProtKB: A0A0P6K6C7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 3.40.50.1580 UniProtKB/TrEMBL
InterPro Nucleoside_phosphorylase_CS UniProtKB/TrEMBL
  Nucleoside_phosphorylase_d UniProtKB/TrEMBL
  Nucleoside_phosphorylase_sf UniProtKB/TrEMBL
  Uridine_phosphorylase_euk UniProtKB/TrEMBL
KEGG Report hgl:101702131 UniProtKB/TrEMBL
NCBI Gene Upp1 ENTREZGENE
Pfam PNP_UDP_1 UniProtKB/TrEMBL
PROSITE PNP_UDP_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53167 UniProtKB/TrEMBL
TIGRFAMs euk_UDPppase UniProtKB/TrEMBL
UniProt A0A0P6K6C7 ENTREZGENE, UniProtKB/TrEMBL