ARNT (aryl hydrocarbon receptor nuclear translocator) - Rat Genome Database

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Gene: ARNT (aryl hydrocarbon receptor nuclear translocator) Pan paniscus
Analyze
Symbol: ARNT
Name: aryl hydrocarbon receptor nuclear translocator
RGD ID: 11978435
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); nuclear receptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell differentiation (ortholog); circadian rhythm (ortholog); embryonic placenta development (ortholog); PARTICIPATES IN aryl hydrocarbon receptor signaling pathway; hypoxia inducible factor pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Cardiac Fibrosis (ortholog); Cardiomegaly (ortholog); FOUND IN nuclear aryl hydrocarbon receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,956,517 - 99,022,721 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,710,135 - 98,776,351 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,160,017 - 126,226,222 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,809,434 - 129,875,629 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,809,431 - 129,875,629 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARNT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,956,517 - 99,022,721 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,710,135 - 98,776,351 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,160,017 - 126,226,222 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,809,434 - 129,875,629 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,809,431 - 129,875,629 (-)Ensemblpanpan1.1panPan2
ARNT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,809,713 - 150,876,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,809,713 - 150,876,708 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,782,189 - 150,849,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,048,810 - 149,115,810 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,595,258 - 147,662,259NCBI
Celera1123,898,224 - 123,964,878 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,159,809 - 122,226,754 (-)NCBIHuRef
CHM1_11152,177,524 - 152,244,584 (-)NCBICHM1_1
T2T-CHM13v2.01149,933,391 - 150,000,287 (-)NCBIT2T-CHM13v2.0
Arnt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,341,674 - 95,404,551 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,341,699 - 95,404,551 (+)EnsemblGRCm39 Ensembl
GRCm38395,434,367 - 95,497,240 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,434,388 - 95,497,240 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,238,312 - 95,301,162 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,519,832 - 95,581,692 (+)NCBIMGSCv36mm8
Celera396,865,861 - 96,928,345 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Arnt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,686,703 - 185,745,546 (+)NCBIGRCr8
mRatBN7.22182,997,731 - 183,056,584 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,997,736 - 183,056,580 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,662,514 - 190,721,330 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,458,053 - 188,516,629 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,295,003 - 183,353,822 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02196,594,178 - 196,651,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,594,303 - 196,651,179 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02216,092,481 - 216,150,842 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,333,978 - 190,391,015 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12190,296,731 - 190,353,769 (+)NCBI
Celera2175,530,933 - 175,587,940 (+)NCBICelera
Cytogenetic Map2q34NCBI
Arnt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588159,462 - 233,047 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588159,462 - 233,047 (-)NCBIChiLan1.0ChiLan1.0
ARNT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1759,941,353 - 60,010,867 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,941,353 - 60,010,867 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,385,568 - 59,456,622 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,956,018 - 61,028,041 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,956,029 - 61,028,010 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,785,290 - 59,856,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,869,465 - 59,941,376 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,597,849 - 60,669,366 (-)NCBIUU_Cfam_GSD_1.0
Arnt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,002,839 - 22,062,779 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,036,973 - 1,082,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,038,420 - 1,093,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARNT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,333,459 - 98,389,457 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,333,431 - 98,390,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,586,868 - 107,638,152 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARNT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,405,916 - 12,471,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arnt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,949,108 - 19,015,504 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,949,221 - 19,016,672 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003817287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003817288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008970461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024925232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034934945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055101686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000058595   ⟹   ENSPPAP00000035706
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,809,431 - 129,875,629 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000058614   ⟹   ENSPPAP00000035725
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,809,434 - 129,875,629 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000058634   ⟹   ENSPPAP00000035745
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,811,750 - 129,859,683 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000058637   ⟹   ENSPPAP00000035748
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,811,750 - 129,859,683 (-)Ensembl
RefSeq Acc Id: XM_003817287   ⟹   XP_003817335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,517 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,135 - 98,775,970 (+)NCBI
Mhudiblu_PPA_v01126,160,017 - 126,226,222 (-)NCBI
PanPan1.11129,809,434 - 129,875,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003817288   ⟹   XP_003817336
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,518 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,152 - 98,775,970 (+)NCBI
Mhudiblu_PPA_v01126,160,398 - 126,226,053 (-)NCBI
PanPan1.11129,809,434 - 129,875,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008970461   ⟹   XP_008968709
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,525 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,142 - 98,776,351 (+)NCBI
Mhudiblu_PPA_v01126,160,398 - 126,226,054 (-)NCBI
PanPan1.11129,809,434 - 129,875,629 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034934869   ⟹   XP_034790760
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,713 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,322 - 98,776,351 (+)NCBI
Mhudiblu_PPA_v01126,160,398 - 126,226,196 (-)NCBI
RefSeq Acc Id: XM_034934880   ⟹   XP_034790771
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,971,879 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,725,498 - 98,776,351 (+)NCBI
Mhudiblu_PPA_v01126,160,017 - 126,226,196 (-)NCBI
RefSeq Acc Id: XM_055101639   ⟹   XP_054957614
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,525 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,168 - 98,776,351 (+)NCBI
RefSeq Acc Id: XM_055101641   ⟹   XP_054957616
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,537 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,187 - 98,776,351 (+)NCBI
RefSeq Acc Id: XM_055101653   ⟹   XP_054957628
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,956,538 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,710,189 - 98,775,970 (+)NCBI
RefSeq Acc Id: XM_055101676   ⟹   XP_054957651
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,969,227 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,722,801 - 98,776,351 (+)NCBI
RefSeq Acc Id: XM_055101686   ⟹   XP_054957661
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,969,213 - 99,022,721 (+)NCBI
NHGRI_mPanPan1198,722,792 - 98,776,351 (+)NCBI
RefSeq Acc Id: XM_063605490   ⟹   XP_063461560
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,972,015 - 99,022,721 (+)NCBI
RefSeq Acc Id: XM_063605501   ⟹   XP_063461571
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,971,877 - 99,022,721 (+)NCBI
RefSeq Acc Id: XM_063605521   ⟹   XP_063461591
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2198,990,168 - 99,022,340 (+)NCBI
RefSeq Acc Id: XP_008968709   ⟸   XM_008970461
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_003817336   ⟸   XM_003817288
- Peptide Label: isoform X6
- UniProtKB: A0A2R9C4C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003817335   ⟸   XM_003817287
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CBJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034790771   ⟸   XM_034934880
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C1E9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034790760   ⟸   XM_034934869
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C1E9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000035706   ⟸   ENSPPAT00000058595
Ensembl Acc Id: ENSPPAP00000035725   ⟸   ENSPPAT00000058614
Ensembl Acc Id: ENSPPAP00000035748   ⟸   ENSPPAT00000058637
Ensembl Acc Id: ENSPPAP00000035745   ⟸   ENSPPAT00000058634
RefSeq Acc Id: XP_054957614   ⟸   XM_055101639
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054957616   ⟸   XM_055101641
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054957628   ⟸   XM_055101653
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054957661   ⟸   XM_055101686
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054957651   ⟸   XM_055101676
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063461571   ⟸   XM_063605501
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063461560   ⟸   XM_063605490
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461591   ⟸   XM_063605521
- Peptide Label: isoform X9
Protein Domains
bHLH   PAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040647 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058595.1 UniProtKB/TrEMBL
  ENSPPAT00000058614.1 UniProtKB/TrEMBL
  ENSPPAT00000058634.1 UniProtKB/TrEMBL
  ENSPPAT00000058637.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  Circadian_TF UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  Nuc_translocat UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold UniProtKB/TrEMBL
KEGG Report pps:100973177 UniProtKB/TrEMBL
NCBI Gene ARNT ENTREZGENE
PANTHER ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR UniProtKB/TrEMBL
  CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS_11 UniProtKB/TrEMBL
PRINTS NCTRNSLOCATR UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
Superfamily-SCOP Positive stranded ssRNA viruses UniProtKB/TrEMBL
  SSF47459 UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
UniProt A0A2R9C1E9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C4C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CBJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CBK8_PANPA UniProtKB/TrEMBL