Arnt (aryl hydrocarbon receptor nuclear translocator) - Rat Genome Database

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Gene: Arnt (aryl hydrocarbon receptor nuclear translocator) Mus musculus
Analyze
Symbol: Arnt
Name: aryl hydrocarbon receptor nuclear translocator
RGD ID: 10189
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and protein heterodimerization activity. Involved in positive regulation of protein sumoylation. Acts upstream of or within several processes, including embryonic placenta development; positive regulation of transcription by RNA polymerase II; and response to hypoxia. Located in cytoplasm and nucleus. Part of transcription regulator complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human ARNT (aryl hydrocarbon receptor nuclear translocator); PARTICIPATES IN aryl hydrocarbon receptor signaling pathway; hypoxia inducible factor pathway; renal cell carcinoma pathway; INTERACTS WITH (-)-epigallocatechin 3-gallate; (S)-naringenin; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: bHLHe; bHLHe2; D3Ertd557; D3Ertd557e; dioxin receptor, nuclear translocator; Drnt; ESTM4; ESTM42; HIF-1-beta; Hif1; HIF1-beta; Hif1b; hypoxia-inducible factor 1-beta; KIAA4051; mKIAA4051; W08714
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,341,674 - 95,404,551 (+)NCBIGRCm39mm39
GRCm39 Ensembl395,341,699 - 95,404,551 (+)Ensembl
GRCm38395,434,367 - 95,497,240 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,434,388 - 95,497,240 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,238,312 - 95,301,162 (+)NCBIGRCm37mm9NCBIm37
MGSCv36395,519,832 - 95,581,692 (+)NCBImm8
Celera396,865,861 - 96,928,345 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(S)-naringenin  (EXP,ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,2-naphthoquinone  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
1H-indole  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (EXP)
3',5'-cyclic AMP  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3'-diindolylmethane  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (EXP)
3-methylcholanthrene  (EXP,ISO)
4-vinylcyclohexene dioxide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
acrolein  (ISO)
acteoside  (ISO)
actinomycin D  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-naphthoflavone  (EXP,ISO)
alpha-pinene  (ISO)
alternariol  (EXP)
amphotericin B  (ISO)
anthracene  (ISO)
apigenin  (EXP,ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
Azaspiracid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene-7,8-dione  (EXP)
beta-naphthoflavone  (EXP,ISO)
bifenthrin  (EXP)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
captan  (EXP)
carbamazepine  (ISO)
chromium(6+)  (ISO)
chrysin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
curcumin  (EXP,ISO)
cycloheximide  (EXP)
cyprodinil  (EXP)
D-glucose  (EXP,ISO)
DDE  (EXP)
Deguelin  (ISO)
delphinidin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dimethyl sulfoxide  (EXP,ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
folpet  (EXP)
gamma-hexachlorocyclohexane  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glucose  (EXP,ISO)
hydrogen peroxide  (ISO)
indole-3-acetic acid  (ISO)
indoxyl sulfate  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
kaempferol  (EXP,ISO)
L-mimosine  (ISO)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
linuron  (EXP)
manganese(II) chloride  (EXP)
MeIQx  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
methotrexate  (EXP,ISO)
methoxychlor  (ISO)
mevinphos  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monobenzyl phthalate  (EXP)
monoethyl phthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP,ISO)
N-nitrosodiethylamine  (EXP)
naphthalene  (ISO)
nevirapine  (ISO)
nickel dichloride  (EXP,ISO)
nickel sulfate  (ISO)
Nonidet P-40  (ISO)
okadaic acid  (ISO)
omeprazole  (ISO)
ozone  (ISO)
perfluorooctanoic acid  (EXP)
phenanthrene  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
prochloraz  (ISO)
progesterone  (ISO)
pyrene  (ISO)
quercetin  (ISO)
rac-lactic acid  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
rutin  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
sanguinarine  (ISO)
SB 431542  (ISO)
Sudan III  (ISO)
sulpiride  (ISO)
tamoxifen  (EXP)
tetracycline  (EXP)
theophylline  (ISO)
thimerosal  (ISO)
trans-piceid  (ISO)
triptonide  (EXP)
Tryptanthrine  (EXP)
ursodeoxycholic acid  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vanadyl sulfate  (ISO)
wortmannin  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal angiogenesis  (IAGP)
abnormal chorionic plate morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal lactation  (IAGP)
abnormal mammary gland growth during pregnancy  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal ovarian follicle morphology  (IAGP)
abnormal placenta development  (IAGP)
abnormal placenta morphology  (IAGP)
abnormal placenta vasculature  (IAGP)
abnormal primordial ovarian follicle morphology  (IAGP)
abnormal skin physiology  (IAGP)
abnormal spongiotrophoblast layer morphology  (IAGP)
abnormal trophoblast giant cell morphology  (IAGP)
abnormal trophoblast layer morphology  (IAGP)
abnormal visceral yolk sac morphology  (IAGP)
absent placental labyrinth  (IAGP)
absent vitelline blood vessels  (IAGP)
decreased circulating iron level  (IAGP)
decreased embryo size  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased keratohyalin granule number  (IAGP)
decreased litter size  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
dehydration  (IAGP)
delayed embryo turning  (IAGP)
disorganized yolk sac vascular plexus  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality between somite formation and embryo turning, incomplete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
female infertility  (IAGP)
forebrain hypoplasia  (IAGP)
hepatic steatosis  (IAGP)
impaired hematopoiesis  (IAGP)
impaired skin barrier function  (IAGP)
increased keratinocyte apoptosis  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
patent ductus venosus  (IAGP)
placenta hemorrhage  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
shortened head  (IAGP)
weight loss  (IAGP)
References

Additional References at PubMed
PMID:7828219   PMID:7961746   PMID:7980646   PMID:8065341   PMID:8244375   PMID:8396713   PMID:8561800   PMID:8589438   PMID:8597038   PMID:8657146   PMID:8662957   PMID:8702901  
PMID:8765475   PMID:8791539   PMID:8816435   PMID:8827514   PMID:8917678   PMID:8940073   PMID:9000051   PMID:9020169   PMID:9022676   PMID:9083006   PMID:9113979   PMID:9121557  
PMID:9208942   PMID:9261927   PMID:9368100   PMID:9398442   PMID:9436976   PMID:9537422   PMID:9545558   PMID:9606183   PMID:9704006   PMID:9733792   PMID:9772216   PMID:9778514  
PMID:10048155   PMID:10349636   PMID:10372405   PMID:10372556   PMID:10409767   PMID:10438476   PMID:10521392   PMID:10605934   PMID:10675351   PMID:11025203   PMID:11042159   PMID:11043581  
PMID:11074397   PMID:11076861   PMID:11084652   PMID:11124810   PMID:11217851   PMID:11230806   PMID:11381139   PMID:11401503   PMID:11782478   PMID:11892012   PMID:11914036   PMID:11937300  
PMID:12068950   PMID:12466851   PMID:12477932   PMID:12502753   PMID:12520002   PMID:12904583   PMID:12917333   PMID:14523989   PMID:14530333   PMID:14597763   PMID:14610273   PMID:14638687  
PMID:14764592   PMID:15016652   PMID:15117738   PMID:15313166   PMID:15342485   PMID:15363889   PMID:15383530   PMID:15466261   PMID:15485806   PMID:15545609   PMID:15618518   PMID:15635607  
PMID:15689487   PMID:15766748   PMID:15782199   PMID:15798202   PMID:15987772   PMID:16141072   PMID:16141073   PMID:16284450   PMID:16287860   PMID:16510575   PMID:16520375   PMID:16824955  
PMID:16941684   PMID:16966370   PMID:17023418   PMID:17105764   PMID:17110583   PMID:17339028   PMID:17342756   PMID:17404621   PMID:17466327   PMID:17607366   PMID:17707923   PMID:17826745  
PMID:17880909   PMID:18096572   PMID:18281291   PMID:18287559   PMID:18288196   PMID:18439915   PMID:18557763   PMID:18779384   PMID:18799693   PMID:18959748   PMID:19228596   PMID:19251700  
PMID:19286559   PMID:19302442   PMID:19416713   PMID:19581591   PMID:19755658   PMID:19822660   PMID:19833882   PMID:19878873   PMID:20059953   PMID:20135683   PMID:20158611   PMID:20185832  
PMID:20211142   PMID:20412781   PMID:20440072   PMID:20495570   PMID:20678473   PMID:20881124   PMID:21181398   PMID:21245039   PMID:21298084   PMID:21324396   PMID:21383064   PMID:21419768  
PMID:21447692   PMID:21677750   PMID:21814490   PMID:21873554   PMID:21873635   PMID:21946855   PMID:21982709   PMID:22028336   PMID:22094019   PMID:22505606   PMID:22699503   PMID:22869521  
PMID:22988430   PMID:23054256   PMID:23140643   PMID:23183047   PMID:23275542   PMID:23321074   PMID:23349485   PMID:23567972   PMID:23836150   PMID:24001774   PMID:24101519   PMID:24204824  
PMID:24248342   PMID:24408928   PMID:24421394   PMID:24552709   PMID:24599965   PMID:24855100   PMID:24878748   PMID:24952961   PMID:24990649   PMID:24999590   PMID:25329697   PMID:25340332  
PMID:25536043   PMID:25559016   PMID:25812120   PMID:25855602   PMID:26147683   PMID:26153230   PMID:26245371   PMID:26409461   PMID:26707719   PMID:26764350   PMID:26837714   PMID:26853750  
PMID:26927670   PMID:27482546   PMID:27782878   PMID:28005939   PMID:28393157   PMID:28602820   PMID:28726633   PMID:29190746   PMID:29467473   PMID:29664738   PMID:29858371   PMID:31451620  
PMID:31580427   PMID:31800592   PMID:31980651   PMID:32325033   PMID:33064329   PMID:33106294  


Genomics

Comparative Map Data
Arnt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,341,674 - 95,404,551 (+)NCBIGRCm39mm39
GRCm39 Ensembl395,341,699 - 95,404,551 (+)Ensembl
GRCm38395,434,367 - 95,497,240 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,434,388 - 95,497,240 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,238,312 - 95,301,162 (+)NCBIGRCm37mm9NCBIm37
MGSCv36395,519,832 - 95,581,692 (+)NCBImm8
Celera396,865,861 - 96,928,345 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
ARNT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1150,809,713 - 150,876,708 (-)EnsemblGRCh38hg38GRCh38
GRCh381150,809,713 - 150,876,737 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371150,782,189 - 150,849,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,048,810 - 149,115,810 (-)NCBINCBI36hg18NCBI36
Build 341147,595,258 - 147,662,259NCBI
Celera1123,898,224 - 123,964,878 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1122,159,809 - 122,226,754 (-)NCBIHuRef
CHM1_11152,177,524 - 152,244,584 (-)NCBICHM1_1
Arnt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,997,731 - 183,056,584 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2182,997,736 - 183,056,580 (+)Ensembl
Rnor_6.02196,594,178 - 196,651,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,594,303 - 196,651,179 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02216,092,481 - 216,150,842 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,333,978 - 190,391,015 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12190,296,731 - 190,353,769 (+)NCBI
Celera2175,530,933 - 175,587,940 (+)NCBICelera
Cytogenetic Map2q34NCBI
Arnt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588159,462 - 233,047 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588159,462 - 233,047 (-)NCBIChiLan1.0ChiLan1.0
ARNT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11129,809,434 - 129,875,629 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,809,431 - 129,875,629 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01126,160,017 - 126,226,222 (-)NCBIMhudiblu_PPA_v0panPan3
ARNT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1759,941,353 - 60,010,867 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,941,353 - 60,010,867 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,385,568 - 59,456,622 (-)NCBI
ROS_Cfam_1.01760,956,018 - 61,028,041 (-)NCBI
UMICH_Zoey_3.11759,785,290 - 59,856,876 (-)NCBI
UNSW_CanFamBas_1.01759,869,465 - 59,941,376 (-)NCBI
UU_Cfam_GSD_1.01760,597,849 - 60,669,366 (-)NCBI
Arnt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,002,839 - 22,062,779 (-)NCBI
SpeTri2.0NW_0049365801,038,420 - 1,093,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARNT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,333,459 - 98,404,961 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,333,431 - 98,390,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,586,868 - 107,638,152 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARNT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,405,916 - 12,471,198 (+)NCBI
Arnt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,949,221 - 19,016,672 (+)NCBI

Position Markers
Arnt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37395,299,408 - 95,299,506UniSTSGRCm37
Celera396,926,591 - 96,926,689UniSTS
Cytogenetic Map3F2.1UniSTS
cM Map347.9UniSTS
AU022700  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,496,753 - 95,496,954UniSTSGRCm38
MGSCv37395,300,675 - 95,300,876UniSTSGRCm37
Celera396,927,858 - 96,928,059UniSTS
Cytogenetic Map3F2.1UniSTS
cM Map3 UniSTS
Whitehead/MRC_RH31085.81UniSTS
D3Umi11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,479,715 - 95,479,844UniSTSGRCm38
MGSCv37395,283,637 - 95,283,766UniSTSGRCm37
Celera396,910,820 - 96,910,949UniSTS
Cytogenetic Map3F2.1UniSTS
cM Map3 UniSTS
PMC228437P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,469,242 - 95,469,433UniSTSGRCm38
MGSCv37395,273,164 - 95,273,355UniSTSGRCm37
Celera396,900,707 - 96,900,898UniSTS
Cytogenetic Map3F2.1UniSTS
W08714  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,496,733 - 95,496,832UniSTSGRCm38
MGSCv37395,300,655 - 95,300,754UniSTSGRCm37
Celera396,927,838 - 96,927,937UniSTS
Cytogenetic Map3F2.1UniSTS
cM MapUN UniSTS
D2Wox41  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,489,604 - 95,490,304UniSTSGRCm38
MGSCv37395,293,526 - 95,294,226UniSTSGRCm37
Celera396,920,709 - 96,921,409UniSTS
Cytogenetic Map3F2.1UniSTS
Arnt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F2.1UniSTS
Arnt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,495,486 - 95,495,584UniSTSGRCm38
MGSCv37395,299,408 - 95,299,506UniSTSGRCm37
Celera396,926,591 - 96,926,689UniSTS
Cytogenetic Map3F2.1UniSTS
cM Map347.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7521114102782718Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)344000000101700000Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)352000000102400000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356796681100556821Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36183275495832934Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366139351100139488Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)368000000128600000Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369661247103661247Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369718176100747974Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370301597104301735Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372232660106232787Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372232660106232787Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375555995109556242Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379641414113641521Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381177336115177481Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382239727116239868Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383556675117556821Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383556675117556821Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383556675117556821Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383556675117556821Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383556675117556821Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383556675117556821Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383556675117556821Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383975596117975728Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384981602118981751Mouse
14746984Manh54_mmandible shape 54 (mouse)385381836119381836Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387301597125522587Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387320699121320699Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389232660137747247Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390469620124469756Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390470701124470701Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390603910100556821Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391092789125101432Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392344217126344334Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir107mmu-miR-107-3pOncomiRDBexternal_infoNANA20308559

Predicted Target Of
Summary Value
Count of predictions:2935
Count of miRNA genes:777
Interacting mature miRNAs:1022
Transcripts:ENSMUST00000015666, ENSMUST00000090804, ENSMUST00000102749, ENSMUST00000107160, ENSMUST00000107161, ENSMUST00000136413, ENSMUST00000140060, ENSMUST00000147094, ENSMUST00000147765, ENSMUST00000149051, ENSMUST00000156653
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC092202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC092203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ183661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP217085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP217086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U14333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000015666   ⟹   ENSMUSP00000015666
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,739 - 95,402,882 (+)Ensembl
GRCm38.p6 Ensembl395,434,428 - 95,495,571 (+)Ensembl
RefSeq Acc Id: ENSMUST00000090804   ⟹   ENSMUSP00000088313
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,701 - 95,404,551 (+)Ensembl
GRCm38.p6 Ensembl395,434,390 - 95,497,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102749   ⟹   ENSMUSP00000099810
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,699 - 95,402,878 (+)Ensembl
GRCm38.p6 Ensembl395,434,388 - 95,495,567 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107160   ⟹   ENSMUSP00000102778
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,739 - 95,368,179 (+)Ensembl
GRCm38.p6 Ensembl395,434,428 - 95,460,868 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107161   ⟹   ENSMUSP00000102779
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,715 - 95,404,548 (+)Ensembl
GRCm38.p6 Ensembl395,434,404 - 95,497,237 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136413   ⟹   ENSMUSP00000116688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,383,408 - 95,394,622 (+)Ensembl
GRCm38.p6 Ensembl395,476,097 - 95,487,311 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,381,427 - 95,387,543 (+)Ensembl
GRCm38.p6 Ensembl395,474,116 - 95,480,232 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147094
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,396,716 - 95,397,717 (+)Ensembl
GRCm38.p6 Ensembl395,489,405 - 95,490,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147765
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,699 - 95,398,933 (+)Ensembl
GRCm38.p6 Ensembl395,434,388 - 95,491,622 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149051
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,341,830 - 95,400,001 (+)Ensembl
GRCm38.p6 Ensembl395,434,519 - 95,492,690 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156653
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,373,599 - 95,402,878 (+)Ensembl
GRCm38.p6 Ensembl395,466,288 - 95,495,567 (+)Ensembl
RefSeq Acc Id: NM_001037737   ⟹   NP_001032826
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,701 - 95,404,551 (+)NCBI
GRCm38395,434,390 - 95,497,240 (+)NCBI
MGSCv37395,238,312 - 95,301,162 (+)RGD
Celera396,865,861 - 96,928,345 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009709   ⟹   NP_033839
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,701 - 95,404,551 (+)NCBI
GRCm38395,434,390 - 95,497,240 (+)NCBI
MGSCv37395,238,312 - 95,301,162 (+)RGD
Celera396,865,861 - 96,928,345 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500930   ⟹   XP_006500993
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,674 - 95,404,532 (+)NCBI
GRCm38395,434,375 - 95,497,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500931   ⟹   XP_006500994
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,674 - 95,404,551 (+)NCBI
GRCm38395,434,375 - 95,497,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500933   ⟹   XP_006500996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,674 - 95,395,715 (+)NCBI
GRCm38395,434,367 - 95,488,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252391   ⟹   XP_030108251
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,715 - 95,404,551 (+)NCBI
GRCm38395,434,404 - 95,497,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252392   ⟹   XP_030108252
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,735 - 95,404,551 (+)NCBI
GRCm38395,434,424 - 95,497,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252393   ⟹   XP_030108253
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,355,695 - 95,404,551 (+)NCBI
GRCm38395,448,384 - 95,497,240 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001783643
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,674 - 95,404,551 (+)NCBI
GRCm38395,434,371 - 95,497,240 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001783644
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,341,674 - 95,404,551 (+)NCBI
GRCm38395,434,371 - 95,497,014 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001032826   ⟸   NM_001037737
- Peptide Label: isoform a
- UniProtKB: P53762 (UniProtKB/Swiss-Prot),   Q3ULM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_033839   ⟸   NM_009709
- Peptide Label: isoform b
- UniProtKB: Q3ULM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500996   ⟸   XM_006500933
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006500993   ⟸   XM_006500930
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006500994   ⟸   XM_006500931
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030108251   ⟸   XM_030252391
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030108252   ⟸   XM_030252392
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030108253   ⟸   XM_030252393
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000088313   ⟸   ENSMUST00000090804
RefSeq Acc Id: ENSMUSP00000015666   ⟸   ENSMUST00000015666
RefSeq Acc Id: ENSMUSP00000102779   ⟸   ENSMUST00000107161
RefSeq Acc Id: ENSMUSP00000102778   ⟸   ENSMUST00000107160
RefSeq Acc Id: ENSMUSP00000116688   ⟸   ENSMUST00000136413
RefSeq Acc Id: ENSMUSP00000099810   ⟸   ENSMUST00000102749
Protein Domains
bHLH   PAC   PAS

Promoters
RGD ID:6833455
Promoter ID:MM_KWN:35301
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000015666,   ENSMUST00000107160,   ENSMUST00000107161,   NM_009709,   OTTMUST00000039717,   OTTMUST00000039718,   UC008QJS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,238,019 - 95,238,519 (+)MPROMDB
RGD ID:6833459
Promoter ID:MM_KWN:35302
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC008QJW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,269,951 - 95,270,451 (+)MPROMDB
RGD ID:6833457
Promoter ID:MM_KWN:35303
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000039723
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,278,191 - 95,278,691 (+)MPROMDB
RGD ID:6833458
Promoter ID:MM_KWN:35304
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   Lung
Transcripts:OTTMUST00000048997
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,279,806 - 95,280,457 (+)MPROMDB
RGD ID:6834120
Promoter ID:MM_KWN:35305
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008QJX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,292,196 - 95,292,696 (+)MPROMDB
RGD ID:6881588
Promoter ID:EPDNEW_M4245
Type:multiple initiation site
Name:Arnt_1
Description:Mus musculus aryl hydrocarbon receptor nuclear translocator ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,434,404 - 95,434,464EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88071 AgrOrtholog
Ensembl Genes ENSMUSG00000015522 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000015666 UniProtKB/TrEMBL
  ENSMUSP00000088313 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099810 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000102778 UniProtKB/TrEMBL
  ENSMUSP00000102779 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000116688 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000015666 UniProtKB/TrEMBL
  ENSMUST00000090804 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000102749 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000107160 UniProtKB/TrEMBL
  ENSMUST00000107161 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000136413 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_translocat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11863 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88071 ENTREZGENE
NCBI Gene 11863 ENTREZGENE
Pfam HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arnt PhenoGen
PRINTS NCTRNSLOCATR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs sensory_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2YDK5_MOUSE UniProtKB/TrEMBL
  A0A0G2YJ29_MOUSE UniProtKB/TrEMBL
  A0A0G2YKU1_MOUSE UniProtKB/TrEMBL
  ARNT_MOUSE UniProtKB/Swiss-Prot
  D3YV20_MOUSE UniProtKB/TrEMBL
  E9QLT6_MOUSE UniProtKB/TrEMBL
  F7C9F6_MOUSE UniProtKB/TrEMBL
  P53762 ENTREZGENE
  Q3U7X2_MOUSE UniProtKB/TrEMBL
  Q3ULM2 ENTREZGENE, UniProtKB/TrEMBL
  Q3URM6_MOUSE UniProtKB/TrEMBL
  Q5DTR2_MOUSE UniProtKB/TrEMBL
  Q8CEC2_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q60661 UniProtKB/Swiss-Prot
  Q921F3 UniProtKB/Swiss-Prot