Grin2c (glutamate receptor, ionotropic, NMDA2C (epsilon 3)) - Rat Genome Database

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Gene: Grin2c (glutamate receptor, ionotropic, NMDA2C (epsilon 3)) Mus musculus
Analyze
Symbol: Grin2c
Name: glutamate receptor, ionotropic, NMDA2C (epsilon 3)
RGD ID: 10688
MGI Page MGI
Description: Enables NMDA glutamate receptor activity; monoatomic cation channel activity; and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Acts upstream of or within several processes, including excitatory postsynaptic potential; neuromuscular process controlling balance; and protein localization to postsynaptic membrane. Part of NMDA selective glutamate receptor complex. Is active in glutamatergic synapse and postsynaptic density membrane. Is expressed in several structures, including brain; colon; eye; gallbladder; and genitourinary system. Orthologous to human GRIN2C (glutamate ionotropic receptor NMDA type subunit 2C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GluN2C; GluRepsilon3; glutamate [NMDA] receptor subunit epsilon-3; glutamate receptor ionotropic, NMDA 2C; N-methyl D-aspartate receptor subtype 2C; NMDA; NMDAR2C; NR; NR2C
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,139,995 - 115,158,123 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,139,995 - 115,158,069 (-)EnsemblGRCm39 Ensembl
GRCm3811115,249,169 - 115,267,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,249,169 - 115,267,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,110,483 - 115,128,557 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,065,259 - 115,083,333 (-)NCBIMGSCv36mm8
Celera11127,014,742 - 127,032,873 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
ammonium chloride  (EXP,ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
Butylparaben  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
celecoxib  (EXP)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cocaine  (ISO)
cordycepin  (ISO)
Cuprizon  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dieldrin  (ISO)
dizocilpine maleate  (ISO)
endosulfan  (ISO)
enzacamene  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
excitatory amino acid agonist  (ISO)
felbamate  (ISO)
folic acid  (EXP)
fonofos  (ISO)
gentamycin  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
kainic acid  (EXP)
ketamine  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lead nitrate  (ISO)
melphalan  (ISO)
menadione  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
minocycline  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monosodium L-glutamate  (ISO)
morphine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
PCB138  (EXP,ISO)
pentobarbital  (ISO)
phenobarbital  (ISO)
piperonyl butoxide  (ISO)
poly(cytidylic acid)  (ISO)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thalidomide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1377365   PMID:1409429   PMID:1493227   PMID:7510577   PMID:7518474   PMID:7518475   PMID:7723623   PMID:7814402   PMID:7929101   PMID:7929904   PMID:8015722   PMID:8036251  
PMID:8267632   PMID:8595214   PMID:8601798   PMID:8699248   PMID:8756432   PMID:8946062   PMID:8965641   PMID:8987814   PMID:8996814   PMID:9004271   PMID:9011744   PMID:9037519  
PMID:9147327   PMID:9344654   PMID:9367786   PMID:9427357   PMID:9458051   PMID:9512392   PMID:9647694   PMID:9718984   PMID:9768843   PMID:9806850   PMID:9892651   PMID:10331083  
PMID:10349636   PMID:10479680   PMID:10972963   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11243853   PMID:11344110   PMID:11422443   PMID:11488959   PMID:12103442   PMID:12427824  
PMID:12477932   PMID:15003177   PMID:15317856   PMID:15519237   PMID:15804405   PMID:16141072   PMID:16141073   PMID:16407568   PMID:16554481   PMID:16602821   PMID:16885526   PMID:17010101  
PMID:17018287   PMID:17054720   PMID:17276696   PMID:18005003   PMID:18287559   PMID:18603407   PMID:18685090   PMID:19332541   PMID:21106831   PMID:21295149   PMID:21300787   PMID:21873635  
PMID:21945132   PMID:22279216   PMID:22586091   PMID:22723691   PMID:22783023   PMID:22848654   PMID:24096375   PMID:24952961   PMID:25081057   PMID:27845401   PMID:27852787   PMID:27922130  
PMID:28285822   PMID:28947779   PMID:29056747   PMID:29101031   PMID:29559384   PMID:29651654   PMID:30056832   PMID:30135482   PMID:31065682   PMID:31072786   PMID:31110197   PMID:31786200  
PMID:32027825   PMID:33421565   PMID:33766086   PMID:34551285   PMID:34693906   PMID:35057644   PMID:35385735   PMID:35746896   PMID:35858542   PMID:35867797   PMID:38603856  


Genomics

Comparative Map Data
Grin2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,139,995 - 115,158,123 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,139,995 - 115,158,069 (-)EnsemblGRCm39 Ensembl
GRCm3811115,249,169 - 115,267,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,249,169 - 115,267,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,110,483 - 115,128,557 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,065,259 - 115,083,333 (-)NCBIMGSCv36mm8
Celera11127,014,742 - 127,032,873 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.8NCBI
GRIN2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,842,023 - 74,861,532 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,842,023 - 74,861,504 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,838,162 - 72,856,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,349,759 - 70,367,602 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,349,762 - 70,367,602NCBI
Celera1769,431,345 - 69,449,257 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,248,662 - 68,267,666 (-)NCBIHuRef
CHM1_11772,902,989 - 72,921,796 (-)NCBICHM1_1
T2T-CHM13v2.01775,733,798 - 75,753,286 (-)NCBIT2T-CHM13v2.0
Grin2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,987,410 - 101,006,064 (-)NCBIGRCr8
mRatBN7.210100,488,430 - 100,507,083 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,488,431 - 100,506,427 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,548,769 - 105,566,341 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,011,829 - 105,029,401 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,409,542 - 100,427,149 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,798,290 - 103,816,923 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,798,291 - 103,816,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,479,941 - 104,497,938 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,323,371 - 105,340,976 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,337,754 - 105,355,751 (-)NCBI
Celera1099,064,978 - 99,082,583 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Grin2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,729,860 - 1,737,751 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,729,431 - 1,746,754 (-)NCBIChiLan1.0ChiLan1.0
GRIN2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,879,305 - 90,898,860 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,702,220 - 95,721,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,787,670 - 68,807,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,344,940 - 74,363,540 (-)NCBIpanpan1.1PanPan1.1panPan2
GRIN2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,582,404 - 5,595,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,576,681 - 5,595,146 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,261,897 - 6,274,915 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,254,398 - 6,267,415 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,255,404 - 6,267,017 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,291,347 - 6,304,344 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,401,937 - 6,414,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,462,275 - 6,475,342 (+)NCBIUU_Cfam_GSD_1.0
Grin2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,200,706 - 6,214,622 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594197,737 - 208,376 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594197,337 - 208,468 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIN2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,383,609 - 6,399,550 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,385,407 - 6,401,454 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,378,936 - 6,390,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIN2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,797,136 - 46,816,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,803,535 - 46,816,292 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,587,830 - 17,602,104 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grin2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,697,512 - 4,712,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,697,891 - 4,713,771 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Grin2c
715 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:267
Count of miRNA genes:127
Interacting mature miRNAs:139
Transcripts:ENSMUST00000003351, ENSMUST00000106554
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse

Markers in Region
L35029  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811115,249,220 - 115,249,372UniSTSGRCm38
MGSCv3711115,110,534 - 115,110,686UniSTSGRCm37
Celera11127,014,793 - 127,014,945UniSTS
Cytogenetic Map11E2UniSTS
cM Map1178.0UniSTS
Whitehead_YAC11 UniSTS
Grin2c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811115,249,187 - 115,249,587UniSTSGRCm38
MGSCv3711115,110,979 - 115,111,157UniSTSGRCm37
Celera11127,014,760 - 127,015,160UniSTS
Cytogenetic Map11E2UniSTS
cM Map1178.0UniSTS
cM Map1178.0UniSTS
Grin2c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811115,249,665 - 115,249,843UniSTSGRCm38
MGSCv3711115,110,979 - 115,111,157UniSTSGRCm37
Celera11127,015,238 - 127,015,416UniSTS
Cytogenetic Map11E2UniSTS
cM Map1178.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH006538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D10694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000003351   ⟹   ENSMUSP00000003351
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,139,995 - 115,156,255 (-)Ensembl
GRCm38.p6 Ensembl11115,249,169 - 115,265,429 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106554   ⟹   ENSMUSP00000102164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,139,995 - 115,158,069 (-)Ensembl
GRCm38.p6 Ensembl11115,249,169 - 115,267,243 (-)Ensembl
RefSeq Acc Id: NM_010350   ⟹   NP_034480
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,158,069 (-)NCBI
GRCm3811115,249,169 - 115,267,243 (-)NCBI
MGSCv3711115,110,483 - 115,128,557 (-)RGD
Celera11127,014,742 - 127,032,873 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532242   ⟹   XP_006532305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,143,621 - 115,157,903 (-)NCBI
GRCm3811115,252,795 - 115,267,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248738   ⟹   XP_011247040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,157,903 (-)NCBI
GRCm3811115,249,169 - 115,267,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248739   ⟹   XP_011247041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,158,123 (-)NCBI
GRCm3811115,249,169 - 115,267,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248741   ⟹   XP_011247043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,158,062 (-)NCBI
GRCm3811115,249,169 - 115,267,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248742   ⟹   XP_011247044
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,158,081 (-)NCBI
GRCm3811115,249,169 - 115,267,256 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248743   ⟹   XP_011247045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,144,102 - 115,157,903 (-)NCBI
GRCm3811115,253,276 - 115,267,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314276   ⟹   XP_017169765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,157,903 (-)NCBI
GRCm3811115,249,169 - 115,267,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314277   ⟹   XP_017169766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,157,802 (-)NCBI
GRCm3811115,249,169 - 115,266,975 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314278   ⟹   XP_017169767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,157,903 (-)NCBI
GRCm3811115,249,169 - 115,267,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314279   ⟹   XP_017169768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,157,903 (-)NCBI
GRCm3811115,249,169 - 115,267,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314280   ⟹   XP_017169769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,158,067 (-)NCBI
GRCm3811115,249,169 - 115,267,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245576   ⟹   XP_030101436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,158,123 (-)NCBI
GRCm3811115,249,169 - 115,267,297 (-)NCBI
Sequence:
RefSeq Acc Id: XR_388349
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,139,995 - 115,157,903 (-)NCBI
GRCm3811115,252,679 - 115,267,234 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034480   ⟸   NM_010350
- Peptide Label: precursor
- UniProtKB: Q01098 (UniProtKB/Swiss-Prot),   A2A6S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532305   ⟸   XM_006532242
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011247041   ⟸   XM_011248739
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011247044   ⟸   XM_011248742
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011247043   ⟸   XM_011248741
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011247040   ⟸   XM_011248738
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011247045   ⟸   XM_011248743
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017169769   ⟸   XM_017314280
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017169768   ⟸   XM_017314279
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017169765   ⟸   XM_017314276
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017169767   ⟸   XM_017314278
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017169766   ⟸   XM_017314277
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030101436   ⟸   XM_030245576
- Peptide Label: isoform X5
Ensembl Acc Id: ENSMUSP00000102164   ⟸   ENSMUST00000106554
Ensembl Acc Id: ENSMUSP00000003351   ⟸   ENSMUST00000003351
Protein Domains
Ionotropic glutamate receptor C-terminal   Ionotropic glutamate receptor L-glutamate and

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q01098-F1-model_v2 AlphaFold Q01098 1-1239 view protein structure

Promoters
RGD ID:6821026
Promoter ID:MM_KWN:10508
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000003351
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611115,127,151 - 115,127,651 (-)MPROMDB
RGD ID:6821027
Promoter ID:MM_KWN:10509
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000019007,   NM_010350
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611115,128,101 - 115,128,601 (-)MPROMDB
RGD ID:8677318
Promoter ID:EPDNEW_M16690
Type:single initiation site
Name:Grin2c_1
Description:Mus musculus glutamate receptor, ionotropic, NMDA2C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811115,267,243 - 115,267,303EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95822 AgrOrtholog
Ensembl Genes ENSMUSG00000020734 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000003351 ENTREZGENE
  ENSMUST00000003351.13 UniProtKB/Swiss-Prot
  ENSMUST00000106554 ENTREZGENE
  ENSMUST00000106554.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.2300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NMDAR2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14813 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95822 ENTREZGENE
NCBI Gene 14813 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NMDAR2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Grin2c PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBPe UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A6S2 ENTREZGENE, UniProtKB/TrEMBL
  NMDE3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE