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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:visual phototransduction pathway
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Accession:PW:0000962 term browser browse the term
Definition:The signaling pathway initiated by light-induced isomerization of 11-cis retinal and subsequent activation of its photoreceptors in rods and cones.
Synonyms:related_synonym: Visual phototransduction;   phototransduction, visible light
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visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arr3 arrestin 3 ISO RGD PMID:21824527 PMID:22074925 RGD:6893539 RGD:6893556 NCBI chrNW_004936762:1,194,251...1,207,914
Ensembl chrNW_004936762:1,194,166...1,208,844 		JBrowse link
G Cimip3 ciliary microtubule inner protein 3 ISO RGD PMID:22074925 RGD:6893539
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:12087135 RGD:6893549 NCBI chrNW_004936482:14,091,343...14,107,793
Ensembl chrNW_004936482:14,091,913...14,107,787 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO RGD PMID:12087135 RGD:6893549 NCBI chrNW_004936744:1,499,431...1,537,784
Ensembl chrNW_004936744:1,514,821...1,540,580 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:12087135 RGD:6893549 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO RGD PMID:12087135 RGD:6893549 NCBI chrNW_004936544:1,166,896...1,305,339
Ensembl chrNW_004936544:1,166,508...1,305,457 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936529:1,735,258...1,740,297
Ensembl chrNW_004936529:1,735,440...1,742,567 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936704:1,079,255...1,093,732
Ensembl chrNW_004936704:1,084,587...1,093,691 		JBrowse link
G Gnb1 G protein subunit beta 1 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936737:1,518,855...1,554,926
Ensembl chrNW_004936737:1,524,325...1,555,102 		JBrowse link
G Gnb3 G protein subunit beta 3 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936709:970,169...977,059
Ensembl chrNW_004936709:970,172...976,863 		JBrowse link
G Gnb5 G protein subunit beta 5 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936471:13,952,462...14,001,663
Ensembl chrNW_004936471:13,955,991...13,997,073 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936803:67,933...71,508
Ensembl chrNW_004936803:67,608...71,541 		JBrowse link
G Gngt2 G protein subunit gamma transducin 2 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936490:12,292,462...12,294,302
Ensembl chrNW_004936490:12,292,457...12,294,199 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO RGD PMID:21903131 RGD:6893555 NCBI chrNW_004936472:152,202...165,134
Ensembl chrNW_004936472:151,854...165,281 		JBrowse link
G Grk7 G protein-coupled receptor kinase 7 ISO RGD PMID:21903131 RGD:6893555 NCBI chrNW_004936540:3,516,706...3,553,102
Ensembl chrNW_004936540:3,515,932...3,553,803 		JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936476:17,679,505...17,688,970
Ensembl chrNW_004936476:17,679,500...17,691,037 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936595:1,235,747...1,250,294
Ensembl chrNW_004936595:1,235,711...1,250,354 		JBrowse link
G Gucy2f guanylate cyclase 2F, retinal ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936499:5,653,384...5,752,732 JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chrNW_004936479:15,696,063...15,702,311
Ensembl chrNW_004936479:15,699,604...15,702,352 		JBrowse link
G Pde6a phosphodiesterase 6A ISO RGD PMID:15224133 RGD:6893540 NCBI chrNW_004936504:5,018,171...5,088,333
Ensembl chrNW_004936504:5,018,064...5,092,024 		JBrowse link
G Pde6b phosphodiesterase 6B ISO RGD PMID:15224133 RGD:6893540 NCBI chrNW_004936477:22,418,037...22,472,251
Ensembl chrNW_004936477:22,417,453...22,472,185 		JBrowse link
G Pde6c phosphodiesterase 6C ISO RGD PMID:15224133 RGD:6893540 NCBI chrNW_004936601:1,343,538...1,393,605
Ensembl chrNW_004936601:1,341,658...1,393,377 		JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:15224133 RGD:6893540 NCBI chrNW_004936594:5,263,345...5,267,240
Ensembl chrNW_004936594:5,263,333...5,267,476 		JBrowse link
G Pde6h phosphodiesterase 6H ISO RGD PMID:15224133 RGD:6893540 NCBI chrNW_004936587:2,505,755...2,514,103
Ensembl chrNW_004936587:2,506,585...2,514,157 		JBrowse link
G Rcvrn recoverin ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936595:2,873,739...2,882,150
Ensembl chrNW_004936595:2,871,630...2,882,557 		JBrowse link
G Rgs9 regulator of G protein signaling 9 ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936541:7,472,195...7,525,220
Ensembl chrNW_004936541:7,458,539...7,525,220 		JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO RGD PMID:22074925 RGD:6893539 NCBI chrNW_004936570:3,042,233...3,043,884
Ensembl chrNW_004936570:3,042,773...3,043,480 		JBrowse link
G Rho rhodopsin ISO RGD PMID:21704730 RGD:6893536 NCBI chrNW_004936602:896,730...901,480
Ensembl chrNW_004936602:894,617...901,664 		JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:21824527 PMID:22074925 RGD:6893539 RGD:6893556 NCBI chrNW_004936525:3,932,118...3,965,651
Ensembl chrNW_004936525:3,931,933...3,964,834 		JBrowse link
G Slc24a1 solute carrier family 24 member 1 ISO RGD PMID:18690016 RGD:6893550 NCBI chrNW_004936471:25,872,854...25,909,102
Ensembl chrNW_004936471:25,872,423...25,908,158 		JBrowse link
G Slc24a2 solute carrier family 24 member 2 ISO RGD PMID:18690016 RGD:6893550 NCBI chrNW_004936652:1,375,292...1,585,718
Ensembl chrNW_004936652:1,378,045...1,583,403 		JBrowse link
altered visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936482:14,091,343...14,107,793
Ensembl chrNW_004936482:14,091,913...14,107,787 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936476:17,679,505...17,688,970
Ensembl chrNW_004936476:17,679,500...17,691,037 		JBrowse link
G Pde6a phosphodiesterase 6A ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936504:5,018,171...5,088,333
Ensembl chrNW_004936504:5,018,064...5,092,024 		JBrowse link
G Pde6b phosphodiesterase 6B ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936477:22,418,037...22,472,251
Ensembl chrNW_004936477:22,417,453...22,472,185 		JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936594:5,263,345...5,267,240
Ensembl chrNW_004936594:5,263,333...5,267,476 		JBrowse link
G Rho rhodopsin ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936602:896,730...901,480
Ensembl chrNW_004936602:894,617...901,664 		JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936525:3,932,118...3,965,651
Ensembl chrNW_004936525:3,931,933...3,964,834 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3945
    signaling pathway 1882
      photosignal transduction pathway 31
        visual phototransduction pathway 31
          altered visual phototransduction pathway 8
Path 2
Term Annotations click to browse term
  pathway 3945
    regulatory pathway 2439
      homeostasis pathway 1275
        organic chemical homeostasis pathway 353
          vitamin homeostasis 93
            vitamin A homeostasis 93
              visual phototransduction pathway 31
                altered visual phototransduction pathway 8
paths to the root