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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:photosignal transduction pathway
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Accession:PW:0001008 term browser browse the term
Definition:The series of reactions within a cell required to convert absorbed photons into molecular signals.
Synonyms:related_synonym: The phototransduction cascade;   phototransduction 


show annotations for term's descendants           Sort by:
altered visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:20212494 RGD:8547536 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Pde6a phosphodiesterase 6A ISO RGD PMID:20212494 RGD:8547536 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B ISO RGD PMID:20212494 RGD:8547536 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:20212494 RGD:8547536 NCBI chr10:105,721,502...105,726,150
Ensembl chr10:105,721,682...105,726,719 		JBrowse link
G Rho rhodopsin ISO RGD PMID:20212494 RGD:8547536 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:20212494 RGD:8547536 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820 		JBrowse link
visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arr3 arrestin 3 ISO RGD PMID:22074925 PMID:21824527 RGD:6893539, RGD:6893556 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153 		JBrowse link
G Arrb1 arrestin, beta 1 IEA KEGG rno:04744 NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061 		JBrowse link
G Arrb2 arrestin, beta 2 IEA KEGG rno:04744 NCBI chr10:55,146,887...55,154,854
Ensembl chr10:55,146,818...55,154,850 		JBrowse link
G Calm1 calmodulin 1 IEA KEGG rno:04744 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 IEA KEGG rno:04744 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 IEA KEGG rno:04744 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Calml3 calmodulin-like 3 IEA KEGG rno:04744 NCBI chr17:66,419,844...66,423,083
Ensembl chr17:66,419,882...66,423,175 		JBrowse link
G Calml5 calmodulin-like 5 IEA KEGG rno:04744 NCBI chr17:66,394,433...66,395,352 JBrowse link
G Cimip3 ciliary microtubule inner protein 3 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 9:13,560,669...13,582,987
Ensembl chr 9:13,560,876...13,582,814 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 TAS
IEA		 KEGG
RGD		 PMID:12087135 rno:04744, RGD:6893549 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 TAS RGD PMID:12087135 RGD:6893549 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 TAS
IEA		 KEGG
RGD		 PMID:12087135 rno:04744, RGD:6893549 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO RGD PMID:12087135 RGD:6893549 NCBI chr 5:32,746,988...32,995,121
Ensembl chr 5:32,746,988...32,995,121 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gnat3 G protein subunit alpha transducin 3 IEA KEGG rno:04744 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283 		JBrowse link
G Gnb1 G protein subunit beta 1 ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Gnb3 G protein subunit beta 3 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 4:157,639,468...157,645,171
Ensembl chr 4:157,639,469...157,645,173 		JBrowse link
G Gnb5 G protein subunit beta 5 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 8:76,076,120...76,105,069
Ensembl chr 8:76,073,306...76,105,069 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Gngt2 G protein subunit gamma transducin 2 ISO RGD PMID:22074925 RGD:6893539 NCBI chr10:80,776,003...80,784,235 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO
IEA		 KEGG
RGD		 PMID:21903131 rno:04744, RGD:6893555 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
G Guca1a guanylate cyclase activator 1A ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Gucy2d guanylate cyclase 2D IEA KEGG rno:04744 NCBI chr 1:152,739,775...152,774,474
Ensembl chr 1:152,739,775...152,774,473 		JBrowse link
G Gucy2e guanylate cyclase 2E ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067 		JBrowse link
G Gucy2f guanylate cyclase 2F ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183 		JBrowse link
G Opn1mw opsin 1, medium wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr  X:151,905,056...151,925,419
Ensembl chr  X:151,905,096...151,925,388 		JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Pde6a phosphodiesterase 6A ISO
IEA		 KEGG
RGD		 PMID:15224133 rno:04744, RGD:6893540 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B ISO
IEA		 KEGG
RGD		 PMID:15224133 rno:04744, RGD:6893540 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pde6c phosphodiesterase 6C ISO RGD PMID:15224133 RGD:6893540 NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:15224133 RGD:6893540 NCBI chr10:105,721,502...105,726,150
Ensembl chr10:105,721,682...105,726,719 		JBrowse link
G Pde6h phosphodiesterase 6H ISO RGD PMID:15224133 RGD:6893540 NCBI chr 4:169,857,793...169,872,969
Ensembl chr 4:169,857,812...169,872,969 		JBrowse link
G Rcvrn recoverin ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453 		JBrowse link
G Rgs9 regulator of G-protein signaling 9 ISO
IEA		 KEGG
RGD		 PMID:22074925 rno:04744, RGD:6893539 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892 		JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO RGD PMID:22074925 RGD:6893539 NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151 		JBrowse link
G Rho rhodopsin ISO
IEA		 KEGG
RGD		 PMID:21704730 rno:04744, RGD:6893536 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:22074925 PMID:21824527 RGD:6893539, RGD:6893556 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820 		JBrowse link
G Slc24a1 solute carrier family 24 member 1 ISO
IEA		 KEGG
RGD		 PMID:18690016 rno:04744, RGD:6893550 NCBI chr 8:65,440,842...65,466,001
Ensembl chr 8:65,440,730...65,466,001 		JBrowse link
G Slc24a2 solute carrier family 24 member 2 ISO RGD PMID:18690016 RGD:6893550 NCBI chr 5:101,497,916...101,741,840
Ensembl chr 5:101,502,278...101,739,337 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    signaling pathway 2635
      photosignal transduction pathway 41
        altered photosignal transduction pathway + 8
        non-visual phototransduction pathway 0
        visual phototransduction pathway + 41
paths to the root