Gnb1 (G protein subunit beta 1) - Rat Genome Database

Name: Gnb1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gnb1 (G protein subunit beta 1) Ictidomys tridecemlineatus

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Symbol:

Gnb1

Name:

G protein subunit beta 1

RGD ID:

12689709

Description:

ENCODES a protein that exhibits alkylglycerophosphoethanolamine phosphodiesterase activity (ortholog); spectrin binding (ortholog); INVOLVED IN cardiac muscle cell apoptotic process (ortholog); cell population proliferation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN adenosine signaling pathway; dopamine signaling pathway via D1 family of receptors; eicosanoid signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); anxiety disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN cell body (ortholog); dendrite (ortholog); heterotrimeric G-protein complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

G protein subunit beta 1, transcript variant X1; G protein subunit beta 1, transcript variant X2; G protein subunit beta 1, transcript variant X3; G protein subunit beta 1, transcript variant X4; G protein subunit beta 1, transcript variant X5; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,524,325 - 1,555,102 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,518,855 - 1,554,926 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

anxiety disorder (ISO)

autism spectrum disorder (ISO)

autosomal dominant intellectual developmental disorder (ISO)

autosomal dominant intellectual developmental disorder 42 (ISO)

cerebral palsy (ISO)

chromosome 1p36 deletion syndrome (ISO)

cleft palate (ISO)

congenital myasthenic syndrome 8 (ISO)

congestive heart failure (ISO)

depressive disorder (ISO)

Developmental Disabilities (ISO)

dilated cardiomyopathy 1LL (ISO)

dystonia (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

epilepsy (ISO)

epilepsy with generalized tonic-clonic seizures (ISO)

Failure to Thrive (ISO)

focal epilepsy (ISO)

genetic disease (ISO)

Goldberg-Shprintzen syndrome (ISO)

Growth Disorders (ISO)

hypothyroidism (ISO)

idiopathic generalized epilepsy (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

intellectual disability (ISO)

Joubert syndrome 25 (ISO)

Language Development Disorders (ISO)

microcephaly (ISO)

Muscle Hypotonia (ISO)

myelodysplastic syndrome (ISO)

Neurodevelopmental Disorders (ISO)

pathologic nystagmus (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

strabismus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiac muscle cell apoptotic process (ISO)

cell population proliferation (IEA,ISO)

cellular response to hypoxia (ISO)

G protein-coupled receptor signaling pathway (IEA,ISO)

phospholipase C-activating G protein-coupled receptor signaling pathway (IEA,ISO)

positive regulation of cytosolic calcium ion concentration (ISO)

retina development in camera-type eye (IEA,ISO)

sensory perception of taste (IEA,ISO)

signal transduction (IEA)

Cellular Component

cell body (ISO)

dendrite (ISO)

heterotrimeric G-protein complex (IEA,ISO)

photoreceptor inner segment (ISO)

photoreceptor outer segment (IEA)

photoreceptor outer segment membrane (ISO)

synapse (IEA,ISO)

Molecular Function

alkylglycerophosphoethanolamine phosphodiesterase activity (ISO)

GTPase activity (IEA)

GTPase binding (IEA)

protein binding (ISO)

protein-containing complex binding (IEA)

spectrin binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

adenosine signaling pathway (ISO)

dopamine signaling pathway via D1 family of receptors (ISO)

eicosanoid signaling pathway (ISO)

follicle-stimulating hormone signaling pathway (ISO)

G protein mediated signaling pathway via Galpha12/Galpha13 family (ISO)

Hedgehog signaling pathway (ISO)

histamine signaling pathway, immunological (ISO)

luteinizing hormone signaling pathway (ISO)

melanocortin system pathway (ISO)

prostaglandin D2 signaling pathway (ISO)

prostaglandin I2 signaling pathway (ISO)

serotonin signaling pathway via receptors engaging G alphas protein family (ISO)

vasopressin signaling pathway via receptor type 2 (ISO)

visual phototransduction pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Gnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,524,325 - 1,555,102 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,518,855 - 1,554,926 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GNB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,785,286 - 1,891,087 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,785,285 - 1,892,292 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,716,725 - 1,822,526 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,706,589 - 1,812,355 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	1,748,891 - 1,854,657	NCBI
Celera	1	824,442 - 878,396 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	993,370 - 1,099,481 (-)	NCBI		HuRef
CHM1_1	1	1,703,768 - 1,809,545 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	1,219,664 - 1,325,475 (-)	NCBI		T2T-CHM13v2.0

Gnb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,575,514 - 155,643,726 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,575,818 - 155,643,726 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,491,300 - 155,559,269 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,491,361 - 155,559,269 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	154,865,470 - 154,933,378 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,335,170 - 154,401,618 (+)	NCBI		MGSCv36	mm8
Celera	4	157,766,104 - 157,834,163 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	86.17	NCBI

Gnb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,357,778 - 171,424,489 (+)	NCBI		GRCr8
mRatBN7.2	5	166,075,508 - 166,142,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,075,629 - 166,142,124 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	168,801,104 - 168,845,812 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,622,525 - 170,667,219 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,585,062 - 170,629,767 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	172,914,025 - 172,981,403 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	172,934,990 - 172,979,986 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,388,373 - 176,456,527 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,341,135 - 172,386,772 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,366,363 - 172,398,680 (+)	NCBI
Celera	5	164,297,726 - 164,342,470 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Gnb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,165,850 - 9,193,066 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	9,165,850 - 9,192,306 (+)	NCBI	ChiLan1.0	ChiLan1.0

GNB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,384,861 - 226,491,117 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,040,769 - 225,147,102 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	490,415 - 596,826 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,647,764 - 1,753,106 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,647,340 - 1,701,614 (-)	Ensembl	panpan1.1		panPan2

GNB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,777,854 - 56,879,619 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,779,354 - 56,817,295 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,854,797 - 56,892,482 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,979,770 - 57,081,319 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,979,770 - 57,081,208 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,971,985 - 57,009,669 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,864,386 - 56,902,053 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,254,317 - 57,292,011 (-)	NCBI		UU_Cfam_GSD_1.0

GNB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,867,158 - 63,952,505 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,867,155 - 63,957,514 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GNB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	129,654,890 - 129,765,765 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	129,707,085 - 129,766,667 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	34,071,639 - 34,168,179 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gnb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	7,936,932 - 8,003,433 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	7,937,061 - 8,002,798 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000010523 ⟹ ENSSTOP00000009443

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936737	1,524,325 - 1,555,102 (+)	Ensembl

RefSeq Acc Id:

XM_005339235 ⟹ XP_005339292

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,947,095 (-)	NCBI
SpeTri2.0	NW_004936737	1,518,855 - 1,554,926 (+)	NCBI

Sequence:

show sequence

GATTTACATGTGTTGGAGACCAGACCAGAAGCACTTCTGAATTAAGATCACGGATTCTTTGAGG
TGGCACTGAAAGCACTAAGACCTGAAGATGAGTGAACTTGACCAGTTGCGGCAGGAGGCGGAAC
AACTGAAAAACCAAATCAGAGATGCTCGAAAAGCATGTGCAGATGCAACTCTCTCCCAGATCAC
AAACAACATCGACCCTGTGGGAAGAATCCAGATGCGCACCAGGAGAACACTGAGGGGGCACCTG
GCCAAGATCTACGCAATGCACTGGGGCACTGATTCCAGGCTTCTCGTCAGTGCCTCACAGGACG
GAAAGCTCATCATCTGGGATAGCTATACCACAAACAAGGTCCACGCCATCCCTCTGCGCTCTTC
CTGGGTCATGACCTGTGCTTACGCCCCTTCTGGGAACTACGTGGCCTGTGGTGGCCTGGACAAC
ATTTGCTCCATTTACAACCTGAAAACTCGCGAAGGGAATGTGCGTGTGAGTCGTGAGCTGGCAG
GACACACAGGTTACTTGTCCTGCTGCCGATTCTTGGATGACAATCAGATAGTCACCAGCTCCGG
AGACACCACGTGTGCTCTGTGGGACATTGAGACCGGCCAGCAGACGACCACATTTACTGGGCAC
ACTGGAGATGTCATGAGCCTGTCTCTCGCTCCTGACACCAGACTGTTTGTCTCTGGTGCTTGTG
ATGCTTCGGCCAAGCTCTGGGATGTCCGGGAGGGGATGTGCAGGCAGACCTTCACAGGCCACGA
GTCGGACATCAATGCCATCTGCTTCTTTCCAAACGGCAACGCATTTGCCACTGGCTCAGATGAC
GCCACCTGCAGGCTGTTTGACCTCCGTGCAGACCAGGAGCTCATGACCTACTCCCATGACAACA
TCATATGCGGGATCACCTCTGTGTCCTTCTCTAAGAGCGGGCGCCTGCTGCTCGCTGGGTACGA
CGACTTCAACTGCAACGTCTGGGATGCGCTCAAAGCAGACAGGGCAGGTGTCTTAGCTGGACAT
GACAACCGCGTCAGCTGTCTGGGGGTGACAGATGATGGCATGGCCGTGGCAACAGGGTCCTGGG
ACAGCTTCCTCAAGATCTGGAACTAACACCAGTAGCAGGTAGACGCCACGGAGACTGGAAGACC
ATTCCGACCTTGAAGCGCTGCAGTGATAGCATATCCTATCCAACCGTACTAACGTGGACACCCA
CACCTCCCCTCAGAACTTCAAAGGGCAAGATCTTTTTCCTTCACCTATTGCTGAAACCAAGAGC
ACAATTCCCATTACGAGAAGGTCTCTGTGCTGTAAACTAAAACAAATCGTGCATTCCTTCCGGG
GCCATTGTCTTTGTTTTCTTTTTGTCTTGAATAAATTTTAAAAGGAAATACTACAATAAACATG
TTAACCAGAAGGCCACCCTGAGTGTAATTGTGAGACAGACGCCTCTGCACTAGCGGCTGGAATT
GTAGACCAGGGTCCTGTTCTGTGGCACCCATGCAGAGCCATTTGAGGACTCTGTTGAGCTTGTG
ATTGTTTCTGAATTTCAAGTCAGGTCCATAGCAGGGTTCTGGATGCTTTCGCACTTCCTTTTTC
AGACATACTTCTCTGAGTTCGGAAGTCAAGCAAGACGGGTGTCTGGGGCAGGCCTCTGATACTG
CCGGTGAGCTGGCTCGTTCTCTTCTGGTCCCAGATGGCTGTGGACGAGGAGTGCTGAGAAGCAA
GAGCGCAGTCAGAGTCCTGCTCCAGCTCCCTCCTAGCCCGTCCTCCTGGCCAGCTCTGCCCAGC
TGTCTCCACTCTCACCTTGGGTTTCCTGTGAAGGGACGTTTGTATTCCCCTAACACTACCCTGC
CCCGCCCCGCGTCAGGAACCTGTTCTCAAGAGAGATGCCTGTCCTGTGCTTGGATAGTCAGTCG
GTTATTTGTGTATGAAACAATGTACAAATCAATGTTTTGAAAATAATGATCTCAGACTTTCTAA
GTTGAATTTTAAACACTTTGATTGTTTGCCATGTTGGGTGGTTTACTCTTAGAATCGCATGCTG
TAGAAATGCTCACTGCACATAGGACTCAGTCCTTAGGTGTTCTTTTCTTTTAAGAAATACCCTC
TTAAAGCTGTAACCGTGGCGGCTGTCCACTTCCTGTCGCTACTCTGCACACATATCGGAAGCAG
CAAGCGCTCTACACGTCTGAGTAGCGGGATAAGTCACTGTTTTCTTTACTTCTTTAAAAAAATA
TACAGTCCTGTTGCAAACGATTGCTGTTGGATTCTGAGGGAAGGGGTGGGGGGAGTGACAGAGA
GCCCTCCTGCCTCCTTGCGCCAGGACCGCCTTCTGCACCCAAGGCAGACCTCCGACTCTCATCT
TGAGGGCCCCTCCTCCCTCGCCCAGTGCTCCTCCTAGCTGCAGTAGAGGCTTCGCCATCCTGTC
TTCTGCACCACCTGTGCAAAACTGTGCTGTGGCCTGCAGAGGGCCTGGGCCTGGCAGAGAGCGC
AATGGCCCTCCTGCTCTCCACCTGCACCTCTGTAGAGCTCTCTTCACCCCCTTCTCCCCTTCTG
TATTTAAAGTCGGTGTACTGCAAGGAGGCTGGATGCAAGGTAGATGCTATGTTGAACTGTACTG
TTATTTAAGATGTAATAAAGCAGTTTGACATGAGGGA

hide sequence

RefSeq Acc Id:

XM_040287769 ⟹ XP_040143703

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

RefSeq Acc Id:

XM_040287770 ⟹ XP_040143704

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,947,093 (-)	NCBI

RefSeq Acc Id:

XM_040287771 ⟹ XP_040143705

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

RefSeq Acc Id:

XM_040287772 ⟹ XP_040143706

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

RefSeq Acc Id:

XM_040287773 ⟹ XP_040143707

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005339292	(Get FASTA)	NCBI Sequence Viewer
	XP_040143703	(Get FASTA)	NCBI Sequence Viewer
	XP_040143704	(Get FASTA)	NCBI Sequence Viewer
	XP_040143705	(Get FASTA)	NCBI Sequence Viewer
	XP_040143706	(Get FASTA)	NCBI Sequence Viewer
	XP_040143707	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009443.2
GenBank Protein	KAG3281930	(Get FASTA)	NCBI Sequence Viewer
	KAG3281931	(Get FASTA)	NCBI Sequence Viewer
	KAG3281932	(Get FASTA)	NCBI Sequence Viewer
	KAG3281933	(Get FASTA)	NCBI Sequence Viewer
	KAG3281934	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005339292 ⟸ XM_005339235

- UniProtKB:

I3MFN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG
TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT
REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL
APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR
ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV
TDDGMAVATGSWDSFLKIWN

hide sequence

RefSeq Acc Id:	XP_040143706 ⟸ XM_040287772
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143703 ⟸ XM_040287769
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143705 ⟸ XM_040287771
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143707 ⟸ XM_040287773
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143704 ⟸ XM_040287770
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000009443 ⟸ ENSSTOT00000010523

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010522	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010523.3	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	Gprotein_B	UniProtKB/TrEMBL
	Guanine_nucleotide-bd_bsu	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Gnb1	ENTREZGENE
PANTHER	GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT BETA-1	UniProtKB/TrEMBL
	PTHR19850	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PIRSF	GN-bd_beta	UniProtKB/TrEMBL
PRINTS	GPROTEINB	UniProtKB/TrEMBL
	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	I3MFN1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)