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Gene: Gnb1 (G protein subunit beta 1) Ictidomys tridecemlineatus

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Symbol:

Gnb1

Name:

G protein subunit beta 1

RGD ID:

12689709

Description:

ENCODES a protein that exhibits alkylglycerophosphoethanolamine phosphodiesterase activity (ortholog); spectrin binding (ortholog); INVOLVED IN cardiac muscle cell apoptotic process (ortholog); cellular response to hypoxia (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN adenosine signaling pathway; dopamine signaling pathway via D1 family of receptors; eicosanoid signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); anxiety disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN cell body (ortholog); dendrite (ortholog); heterotrimeric G-protein complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

G protein subunit beta 1, transcript variant X1; G protein subunit beta 1, transcript variant X2; G protein subunit beta 1, transcript variant X3; G protein subunit beta 1, transcript variant X4; G protein subunit beta 1, transcript variant X5; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,524,325 - 1,555,102 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,518,855 - 1,554,926 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	congestive heart failure	disease_progression	ISO	GNB1 (Homo sapiens)	9068941	DNA:mutations: :	RGD	PMID:33779075 and REF_RGD_ID:155630627

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	acute lymphoblastic leukemia		ISO	GNB1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	autism spectrum disorder		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism spectrum disorders	ClinVar	PMID:25741868 more ...
Gnb1	Squirrel	autosomal dominant intellectual developmental disorder		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal dominant non-syndromic intellectual disability	ClinVar	PMID:25741868
Gnb1	Squirrel	autosomal dominant intellectual developmental disorder 42		ISO	GNB1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:19344873 more ...
Gnb1	Squirrel	cerebral palsy		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cerebral palsy	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	chromosome 1p36 deletion syndrome		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar	PMID:25741868
Gnb1	Squirrel	cleft palate		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cleft palate	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	congenital myasthenic syndrome 8		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital myasthenic syndrome 8	ClinVar	PMID:24951643 and PMID:28492532
Gnb1	Squirrel	Developmental Disabilities		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Global developmental delay	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	dilated cardiomyopathy 1LL		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Left ventricular noncompaction 8	ClinVar	PMID:28492532
Gnb1	Squirrel	dystonia		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dystonia	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	Ehlers-Danlos syndrome spondylodysplastic type 2		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome more ...	ClinVar	PMID:10862081 more ...
Gnb1	Squirrel	epilepsy		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Seizure	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	epilepsy		ISO	GNB1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	epilepsy with generalized tonic-clonic seizures		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Generalized tonic-clonic seizures	ClinVar	PMID:25741868 more ...
Gnb1	Squirrel	Failure to Thrive		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Failure to thrive	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	focal epilepsy		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Focal seizures with impairment of consciousness or awareness	ClinVar	PMID:25485910 more ...
Gnb1	Squirrel	genetic disease		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:19344873 more ...
Gnb1	Squirrel	Goldberg-Shprintzen syndrome		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090 more ...
Gnb1	Squirrel	Growth Disorders		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Growth Retardation	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	hypothyroidism		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypothyroidism	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	Idiopathic Generalized Epilepsy		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Idiopathic generalized epilepsy	ClinVar	PMID:28492532
Gnb1	Squirrel	immunodeficiency 16		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Combined immunodeficiency due to OX40 deficiency	ClinVar	PMID:10862081 more ...
Gnb1	Squirrel	immunodeficiency 38		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency	ClinVar	PMID:10862081 more ...
Gnb1	Squirrel	intellectual disability		ISO	GNB1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	intellectual disability		ISO	GNB1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	Joubert syndrome 25		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Joubert syndrome 25	ClinVar	PMID:10862081 more ...
Gnb1	Squirrel	Language Development Disorders		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Expressive language delay	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	microcephaly		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microcephaly	ClinVar	PMID:25741868 more ...
Gnb1	Squirrel	Muscle Hypotonia		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: poor muscle tone	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	myelodysplastic syndrome		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Myelodysplastic syndromes	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	Neurodevelopmental Disorders		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	Neurodevelopmental Disorders		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	pathologic nystagmus		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nystagmus	ClinVar	PMID:24033266 more ...
Gnb1	Squirrel	Peroxisome Biogenesis Disorder, Complementation Group 7		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorder and complementation group 7	ClinVar	PMID:10862081 more ...
Gnb1	Squirrel	Shprintzen-Goldberg Craniosynostosis		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090 more ...
Gnb1	Squirrel	strabismus		ISO	GNB1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Strabismus	ClinVar	PMID:24033266 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	anxiety disorder		ISO	GNB1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:22113448
Gnb1	Squirrel	depressive disorder		ISO	GNB1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:22113448

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	acute lymphoblastic leukemia		ISO	GNB1 (Homo sapiens)	7240710		OMIM
Gnb1	Squirrel	autosomal dominant intellectual developmental disorder 42		ISO	GNB1 (Homo sapiens)	7240710		OMIM
Gnb1	Squirrel	myelodysplastic syndrome		ISO	GNB1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	cardiac muscle cell apoptotic process	acts_upstream_of_or_within	ISO	Gnb1 (Rattus norvegicus)	9068941	PMID:19723622	MGI	PMID:19723622 and REF_RGD_ID:8554041
Gnb1	Squirrel	cell population proliferation	acts_upstream_of_or_within	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	cellular response to hypoxia	acts_upstream_of_or_within	ISO	Gnb1 (Rattus norvegicus)	9068941	PMID:19723622	MGI	PMID:19723622 and REF_RGD_ID:8554041
Gnb1	Squirrel	G protein-coupled receptor signaling pathway		ISO	Gnb1 (Rattus norvegicus)	9068941		RGD	PMID:9092554 and REF_RGD_ID:1582440
Gnb1	Squirrel	G protein-coupled receptor signaling pathway	acts_upstream_of_or_within	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	phospholipase C-activating G protein-coupled receptor signaling pathway	acts_upstream_of_or_within	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	positive regulation of cytosolic calcium ion concentration		ISO	Gnb1 (Rattus norvegicus)	9068941		RGD	PMID:9092554 and REF_RGD_ID:1582440
Gnb1	Squirrel	retina development in camera-type eye	acts_upstream_of_or_within	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	sensory perception of taste	acts_upstream_of_or_within	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	signal transduction	involved_in	IEA	InterPro:IPR016346	150520179		InterPro	GO_REF:0000002
Gnb1	Squirrel	signal transduction	involved_in	IEA	UniProtKB-KW:KW-0807	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	cell body		ISO	Gnb1 (Rattus norvegicus)	9068941	Purkinje cells	RGD	PMID:9648884 and REF_RGD_ID:6893645
Gnb1	Squirrel	dendrite		ISO	Gnb1 (Rattus norvegicus)	9068941	Purkinje cells	RGD	PMID:9648884 and REF_RGD_ID:6893645
Gnb1	Squirrel	heterotrimeric G-protein complex		ISO	Gnb1 (Rattus norvegicus)	9068941		RGD	PMID:11931744 and REF_RGD_ID:1599009
Gnb1	Squirrel	heterotrimeric G-protein complex	part_of	IEA	UniProtKB:P62873 more ...	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	photoreceptor inner segment		ISO	Gnb1 (Rattus norvegicus)	9068941		RGD	PMID:11931744 and REF_RGD_ID:1599009
Gnb1	Squirrel	photoreceptor outer segment	located_in	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	photoreceptor outer segment membrane		ISO	Gnb1 (Rattus norvegicus)	9068941		RGD	PMID:11931744 and REF_RGD_ID:1599009
Gnb1	Squirrel	synapse	is_active_in	IEA	UniProtKB:P62874 and ensembl:ENSMUSP00000130123	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	alkylglycerophosphoethanolamine phosphodiesterase activity	enables	ISO	Gnb1 (Rattus norvegicus)	9068941	PMID:21812758	MGI	PMID:21812758 and REF_RGD_ID:10448949
Gnb1	Squirrel	GTPase activity	enables	IEA	UniProtKB:P62873 and ensembl:ENSP00000367872	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	GTPase binding	enables	IEA	UniProtKB:P62873 and ensembl:ENSP00000367872	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:Q99471	9068941	PMID:25036637	IntAct	PMID:25036637
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P59768	9068941	PMID:23739333 more ...	IntAct	PMID:23739333 more ...
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:Q08AM6 and UniProtKB:Q9UI47-2	9068941	PMID:32296183	IntAct	PMID:32296183
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P42858	9068941	PMID:17500595	IntAct	PMID:17500595
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P07237 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P04899 and UniProtKB:P19878	9068941	PMID:16782902	IntAct	PMID:16782902
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:Q5BJU7	9068941	PMID:16530190	IntAct	PMID:16530190 and REF_RGD_ID:8554036
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P04899 more ...	9068941	PMID:33961781	IntAct	PMID:33961781
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P04899 more ...	9068941	PMID:35271311	IntAct	PMID:35271311
Gnb1	Squirrel	protein binding	enables	ISO	UniProtKB:P63218	9068941	PMID:25416956	IntAct	PMID:25416956
Gnb1	Squirrel	protein-containing complex binding	enables	IEA	UniProtKB:P62873 and ensembl:ENSP00000367872	150520179		Ensembl	GO_REF:0000107
Gnb1	Squirrel	spectrin binding	enables	ISO	Gnb1 (Rattus norvegicus)	9068941	PMID:23704327	MGI	PMID:23704327 and REF_RGD_ID:8553853

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	G protein mediated signaling pathway via Galpha12/Galpha13 family		ISO	Gnb1 (Rattus norvegicus)	9068941		RGD	PMID:9092554 and REF_RGD_ID:1582440
Gnb1	Squirrel	visual phototransduction pathway		ISO	GNB1 (Homo sapiens)	9068941		RGD	PMID:22074925 and REF_RGD_ID:6893539

Imported Annotations - SMPDB

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	adenosine signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00320 and SMP:00321
Gnb1	Squirrel	dopamine signaling pathway via D1 family of receptors		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00308
Gnb1	Squirrel	follicle-stimulating hormone signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00333
Gnb1	Squirrel	histamine signaling pathway, immunological		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00335
Gnb1	Squirrel	luteinizing hormone signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00338
Gnb1	Squirrel	melanocortin system pathway		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00310
Gnb1	Squirrel	prostaglandin D2 signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00343
Gnb1	Squirrel	prostaglandin I2 signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00354
Gnb1	Squirrel	serotonin signaling pathway via receptors engaging G alphas protein family		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00309 more ...
Gnb1	Squirrel	vasopressin signaling pathway via receptor type 2		ISO	GNB1 (Homo sapiens)	9068941		SMPDB	SMP:00322

Imported Annotations - PID (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gnb1	Squirrel	eicosanoid signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		PID	PID:200082
Gnb1	Squirrel	Hedgehog signaling pathway		ISO	GNB1 (Homo sapiens)	9068941		PID	PID:200172

PMID:22301074	PMID:30032202

Gnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,524,325 - 1,555,102 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,518,855 - 1,554,926 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GNB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,785,286 - 1,891,087 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,785,285 - 1,892,292 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,716,725 - 1,822,526 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,706,589 - 1,812,355 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	1,748,891 - 1,854,657	NCBI
Celera	1	824,442 - 878,396 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	993,370 - 1,099,481 (-)	NCBI		HuRef
CHM1_1	1	1,703,768 - 1,809,545 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	1,219,664 - 1,325,475 (-)	NCBI		T2T-CHM13v2.0

Gnb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,575,514 - 155,643,726 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,575,818 - 155,643,726 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,491,300 - 155,559,269 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,491,361 - 155,559,269 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	154,865,470 - 154,933,378 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,335,170 - 154,401,618 (+)	NCBI		MGSCv36	mm8
Celera	4	157,766,104 - 157,834,163 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	86.17	NCBI

Gnb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,357,778 - 171,424,489 (+)	NCBI		GRCr8
mRatBN7.2	5	166,075,508 - 166,142,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,075,629 - 166,142,124 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	168,801,104 - 168,845,812 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,622,525 - 170,667,219 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,585,062 - 170,629,767 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	172,914,025 - 172,981,403 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	172,934,990 - 172,979,986 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,388,373 - 176,456,527 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,341,135 - 172,386,772 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,366,363 - 172,398,680 (+)	NCBI
Celera	5	164,297,726 - 164,342,470 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Gnb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,165,850 - 9,193,066 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	9,165,850 - 9,192,306 (+)	NCBI	ChiLan1.0	ChiLan1.0

GNB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,384,861 - 226,491,117 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,040,769 - 225,147,102 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	490,415 - 596,826 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,647,764 - 1,753,106 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,647,340 - 1,701,614 (-)	Ensembl	panpan1.1		panPan2

GNB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,777,854 - 56,879,619 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,779,354 - 56,817,295 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,854,797 - 56,892,482 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,979,770 - 57,081,319 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,979,770 - 57,081,208 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,971,985 - 57,009,669 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,864,386 - 56,902,053 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,254,317 - 57,292,011 (-)	NCBI		UU_Cfam_GSD_1.0

GNB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,867,158 - 63,952,505 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,867,155 - 63,957,514 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GNB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	129,654,890 - 129,765,765 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	129,707,085 - 129,766,667 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	34,071,639 - 34,168,179 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gnb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	7,936,932 - 8,003,433 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	7,937,061 - 8,002,798 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005339235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000010523 ⟹ ENSSTOP00000009443

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936737	1,524,325 - 1,555,102 (+)	Ensembl

RefSeq Acc Id:

XM_005339235 ⟹ XP_005339292

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,947,095 (-)	NCBI
SpeTri2.0	NW_004936737	1,518,855 - 1,554,926 (+)	NCBI

Sequence:

show sequence

GATTTACATGTGTTGGAGACCAGACCAGAAGCACTTCTGAATTAAGATCACGGATTCTTTGAGGTGGCACTGAAAGCACTAAGACCTGAAGATGAGTGAACTTGACCAGTTGCGGCAGGAGGCGGAAC
AACTGAAAAACCAAATCAGAGATGCTCGAAAAGCATGTGCAGATGCAACTCTCTCCCAGATCACAAACAACATCGACCCTGTGGGAAGAATCCAGATGCGCACCAGGAGAACACTGAGGGGGCACCTG
GCCAAGATCTACGCAATGCACTGGGGCACTGATTCCAGGCTTCTCGTCAGTGCCTCACAGGACGGAAAGCTCATCATCTGGGATAGCTATACCACAAACAAGGTCCACGCCATCCCTCTGCGCTCTTC
CTGGGTCATGACCTGTGCTTACGCCCCTTCTGGGAACTACGTGGCCTGTGGTGGCCTGGACAACATTTGCTCCATTTACAACCTGAAAACTCGCGAAGGGAATGTGCGTGTGAGTCGTGAGCTGGCAG
GACACACAGGTTACTTGTCCTGCTGCCGATTCTTGGATGACAATCAGATAGTCACCAGCTCCGGAGACACCACGTGTGCTCTGTGGGACATTGAGACCGGCCAGCAGACGACCACATTTACTGGGCAC
ACTGGAGATGTCATGAGCCTGTCTCTCGCTCCTGACACCAGACTGTTTGTCTCTGGTGCTTGTGATGCTTCGGCCAAGCTCTGGGATGTCCGGGAGGGGATGTGCAGGCAGACCTTCACAGGCCACGA
GTCGGACATCAATGCCATCTGCTTCTTTCCAAACGGCAACGCATTTGCCACTGGCTCAGATGACGCCACCTGCAGGCTGTTTGACCTCCGTGCAGACCAGGAGCTCATGACCTACTCCCATGACAACA
TCATATGCGGGATCACCTCTGTGTCCTTCTCTAAGAGCGGGCGCCTGCTGCTCGCTGGGTACGACGACTTCAACTGCAACGTCTGGGATGCGCTCAAAGCAGACAGGGCAGGTGTCTTAGCTGGACAT
GACAACCGCGTCAGCTGTCTGGGGGTGACAGATGATGGCATGGCCGTGGCAACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAACACCAGTAGCAGGTAGACGCCACGGAGACTGGAAGACC
ATTCCGACCTTGAAGCGCTGCAGTGATAGCATATCCTATCCAACCGTACTAACGTGGACACCCACACCTCCCCTCAGAACTTCAAAGGGCAAGATCTTTTTCCTTCACCTATTGCTGAAACCAAGAGC
ACAATTCCCATTACGAGAAGGTCTCTGTGCTGTAAACTAAAACAAATCGTGCATTCCTTCCGGGGCCATTGTCTTTGTTTTCTTTTTGTCTTGAATAAATTTTAAAAGGAAATACTACAATAAACATG
TTAACCAGAAGGCCACCCTGAGTGTAATTGTGAGACAGACGCCTCTGCACTAGCGGCTGGAATTGTAGACCAGGGTCCTGTTCTGTGGCACCCATGCAGAGCCATTTGAGGACTCTGTTGAGCTTGTG
ATTGTTTCTGAATTTCAAGTCAGGTCCATAGCAGGGTTCTGGATGCTTTCGCACTTCCTTTTTCAGACATACTTCTCTGAGTTCGGAAGTCAAGCAAGACGGGTGTCTGGGGCAGGCCTCTGATACTG
CCGGTGAGCTGGCTCGTTCTCTTCTGGTCCCAGATGGCTGTGGACGAGGAGTGCTGAGAAGCAAGAGCGCAGTCAGAGTCCTGCTCCAGCTCCCTCCTAGCCCGTCCTCCTGGCCAGCTCTGCCCAGC
TGTCTCCACTCTCACCTTGGGTTTCCTGTGAAGGGACGTTTGTATTCCCCTAACACTACCCTGCCCCGCCCCGCGTCAGGAACCTGTTCTCAAGAGAGATGCCTGTCCTGTGCTTGGATAGTCAGTCG
GTTATTTGTGTATGAAACAATGTACAAATCAATGTTTTGAAAATAATGATCTCAGACTTTCTAAGTTGAATTTTAAACACTTTGATTGTTTGCCATGTTGGGTGGTTTACTCTTAGAATCGCATGCTG
TAGAAATGCTCACTGCACATAGGACTCAGTCCTTAGGTGTTCTTTTCTTTTAAGAAATACCCTCTTAAAGCTGTAACCGTGGCGGCTGTCCACTTCCTGTCGCTACTCTGCACACATATCGGAAGCAG
CAAGCGCTCTACACGTCTGAGTAGCGGGATAAGTCACTGTTTTCTTTACTTCTTTAAAAAAATATACAGTCCTGTTGCAAACGATTGCTGTTGGATTCTGAGGGAAGGGGTGGGGGGAGTGACAGAGA
GCCCTCCTGCCTCCTTGCGCCAGGACCGCCTTCTGCACCCAAGGCAGACCTCCGACTCTCATCTTGAGGGCCCCTCCTCCCTCGCCCAGTGCTCCTCCTAGCTGCAGTAGAGGCTTCGCCATCCTGTC
TTCTGCACCACCTGTGCAAAACTGTGCTGTGGCCTGCAGAGGGCCTGGGCCTGGCAGAGAGCGCAATGGCCCTCCTGCTCTCCACCTGCACCTCTGTAGAGCTCTCTTCACCCCCTTCTCCCCTTCTG
TATTTAAAGTCGGTGTACTGCAAGGAGGCTGGATGCAAGGTAGATGCTATGTTGAACTGTACTGTTATTTAAGATGTAATAAAGCAGTTTGACATGAGGGA

hide sequence

RefSeq Acc Id:

XM_040287769 ⟹ XP_040143703

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

RefSeq Acc Id:

XM_040287770 ⟹ XP_040143704

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,947,093 (-)	NCBI

RefSeq Acc Id:

XM_040287771 ⟹ XP_040143705

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

RefSeq Acc Id:

XM_040287772 ⟹ XP_040143706

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI

RefSeq Acc Id:

XM_040287773 ⟹ XP_040143707

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	27,911,024 - 27,981,551 (-)	NCBI


Protein RefSeqs	XP_005339292	(Get FASTA)	NCBI Sequence Viewer
	XP_040143703	(Get FASTA)	NCBI Sequence Viewer
	XP_040143704	(Get FASTA)	NCBI Sequence Viewer
	XP_040143705	(Get FASTA)	NCBI Sequence Viewer
	XP_040143706	(Get FASTA)	NCBI Sequence Viewer
	XP_040143707	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009443.2
GenBank Protein	KAG3281930	(Get FASTA)	NCBI Sequence Viewer
	KAG3281931	(Get FASTA)	NCBI Sequence Viewer
	KAG3281932	(Get FASTA)	NCBI Sequence Viewer
	KAG3281933	(Get FASTA)	NCBI Sequence Viewer
	KAG3281934	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005339292 ⟸ XM_005339235

- UniProtKB:

I3MFN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT
REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR
ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN

hide sequence

RefSeq Acc Id:	XP_040143706 ⟸ XM_040287772
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143703 ⟸ XM_040287769
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143705 ⟸ XM_040287771
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040143707 ⟸ XM_040287773
- UniProtKB:	I3MFN1 (UniProtKB/TrEMBL)

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010522	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010523.3	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	Gprotein_B	UniProtKB/TrEMBL
	Guanine_nucleotide-bd_bsu	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Gnb1	ENTREZGENE
PANTHER	PTHR19850	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PIRSF	GN-bd_beta	UniProtKB/TrEMBL
PRINTS	GPROTEINB	UniProtKB/TrEMBL
	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	I3MFN1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)