Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:histone decrotonylase activity
go back to main search page
Accession:GO:0160009 term browser browse the term
Definition:Catalysis of the reaction: H2O + N6-(2E)-butenoyl-L-lysyl-[histone] = (2E)-2-butenoate + L-lysyl-[histone].


show annotations for term's descendants           Sort by:
histone decrotonylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac1 histone deacetylase 1 enables ISS
ISO		 GO_REF:0000024
(MGI:6867113|PMID:30279482)
(PMID:28497810)		 UniProt
RGD		 PMID:28497810 PMID:30279482 GO_REF:0000024 MGI:6867113 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO (PMID:28497810)
(MGI:6867113|PMID:30279482)		 RGD PMID:28497810 PMID:30279482 MGI:6867113 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hdac3 histone deacetylase 3 enables ISS
ISO		 GO_REF:0000024
(PMID:28497810)
(MGI:6867113|PMID:30279482)		 UniProt
RGD		 PMID:28497810 PMID:30279482 GO_REF:0000024 MGI:6867113 NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856 		JBrowse link
G Hdac8 histone deacetylase 8 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28497810)		 UniProt
Ensembl
RGD		 PMID:28497810 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:67,385,288...67,593,014
Ensembl chr  X:67,385,289...67,592,923 		JBrowse link
NAD-dependent histone decrotonylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 enables ISS
ISO		 GO_REF:0000024
(PMID:28497810)		 UniProt
RGD		 PMID:28497810 GO_REF:0000024 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21010
    catalytic activity 6145
      catalytic activity, acting on a protein 2516
        histone modifying activity 233
          histone decrotonylase activity 5
            NAD-dependent histone decrotonylase activity + 1
Path 2
Term Annotations click to browse term
  molecular_function 21010
    catalytic activity 6145
      hydrolase activity 2639
        hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 135
          hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 77
            protein decrotonylase activity 6
              histone decrotonylase activity 5
                NAD-dependent histone decrotonylase activity + 1
paths to the root