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ONTOLOGY REPORT - ANNOTATIONS

Term:mitochondrial tRNA processing
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Accession:GO:0090646 term browser browse the term
Definition:The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group, in the mitochondrion.
Synonyms:only_in_taxon: NCBITaxon:2759 ! Eukaryota


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mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS		 (PMID:27132592)
GO_REF:0000024		 RGD
UniProt		 PMID:27132592 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
(PMID:21593607)
GO_REF:0000033		 UniProt
Ensembl
RGD
GO_Central		 PMID:21593607 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:29040705)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA		 (PMID:11504732)
GO_REF:0000033		 RGD
GO_Central		 PMID:11504732 GO_REF:0000033 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611 		JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705), (PMID:29880640)		 UniProt
Ensembl
RGD		 PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:25953853), (PMID:29880640)		 UniProt
GO_Central
RGD		 PMID:25953853 PMID:29880640 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:29040705), (PMID:29880640)		 UniProt
GO_Central
RGD		 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000033 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23042678), (PMID:25925575), (PMID:28888424)		 UniProt
Ensembl
RGD		 PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) RGD PMID:23042678 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO
IBA		 (PMID:26189817)
GO_REF:0000033		 RGD
GO_Central		 PMID:26189817 GO_REF:0000033 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555 		JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (PMID:25738458) RGD PMID:25738458 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677 		JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131) RGD PMID:34774131 NCBI chr 3:55,731,453...55,863,652
Ensembl chr 3:55,770,167...55,863,676 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:34774131)
(PMID:24901367)		 RGD PMID:24901367 PMID:34774131 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764 		JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
SGD:S000003205 (PMID:14522080)		 GO_Central
RGD		 PMID:14522080 GO_REF:0000033 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11448
      primary metabolic process 10014
        nucleobase-containing compound metabolic process 5530
          nucleic acid metabolic process 4955
            nucleic acid catabolic process 795
              tRNA processing 129
                mitochondrial tRNA processing 12
                  mitochondrial mRNA polyadenylation 1
                  mitochondrial tRNA 3'-end processing 4
                  mitochondrial tRNA 5'-end processing 3
                  mitochondrial tRNA modification + 8
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11448
      organic substance metabolic process 10963
        organic cyclic compound metabolic process 6032
          nucleobase-containing compound metabolic process 5530
            nucleic acid metabolic process 4955
              RNA metabolic process 4367
                RNA processing 954
                  mitochondrial RNA processing 20
                    mitochondrial tRNA processing 12
                      mitochondrial mRNA polyadenylation 1
                      mitochondrial tRNA 3'-end processing 4
                      mitochondrial tRNA 5'-end processing 3
                      mitochondrial tRNA modification + 8
paths to the root