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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of nucleobase-containing compound transport
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Accession:GO:0032239 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Synonyms:related_synonym: regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport


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negative regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nup153 nucleoporin 153 involved_in ISO
ISS
IEA		 (PMID:22253824)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:22253824 GO_REF:0000024 GO_REF:0000107 NCBI chr17:17,972,217...18,024,876
Ensembl chr17:17,972,217...18,024,876 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein involved_in ISO
IEA
ISS		 (PMID:21613532), (PMID:22253824)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21613532 PMID:22253824 GO_REF:0000024 GO_REF:0000107 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
positive regulation of nucleoside transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IDA RGD PMID:15024061 RGD:1625258 NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801 		JBrowse link
positive regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:19864460) RGD PMID:19864460 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:11402034) RGD PMID:11402034 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21613532)		 UniProt
RGD		 PMID:21613532 GO_REF:0000024 NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) RGD PMID:30842217 NCBI chr 6:119,405,103...119,446,861
Ensembl chr 6:119,404,334...119,448,915 		JBrowse link
regulation of mRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11402034) RGD PMID:11402034 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275 		JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase acts_upstream_of_or_within ISO
ISS		 (PMID:23177736)
GO_REF:0000024		 RGD
UniProt		 PMID:23177736 GO_REF:0000024 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331 		JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17234882)		 UniProt
Ensembl
RGD		 PMID:17234882 GO_REF:0000024 GO_REF:0000107 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:28418038) RGD PMID:28418038 NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:19141475) RGD PMID:19141475 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (MGI:5508611|PMID:17234882) RGD PMID:17234882 MGI:5508611 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Thoc2 THO complex subunit 2 acts_upstream_of_or_within ISO (PMID:24315442) RGD PMID:24315442 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513 		JBrowse link
G Thoc5 THO complex subunit 5 acts_upstream_of_or_within ISO (PMID:24315442) RGD PMID:24315442 NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718 		JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT|involved_in ISO (PMID:22253824) RGD PMID:22253824 NCBI chr13:62,424,312...62,487,502
Ensembl chr13:62,424,312...62,487,496 		JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:29196535)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:29196535 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:153,128,334...153,253,905
Ensembl chr 4:153,128,334...153,253,905 		JBrowse link
regulation of RNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:12496368)		 UniProt
RGD		 PMID:12496368 GO_REF:0000024 NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19870
    regulation of biological process 12997
      regulation of localization 2315
        regulation of transport 1865
          regulation of nucleobase-containing compound transport 17
            negative regulation of nucleobase-containing compound transport + 2
            positive regulation of nucleobase-containing compound transport + 6
            regulation of ATP:ADP antiporter activity + 0
            regulation of RNA export from nucleus + 16
            regulation of RNA import into nucleus + 0
            regulation of hypoxanthine transport + 0
            regulation of nucleoside transport + 1
            regulation of thymine transport + 0
Path 2
Term Annotations click to browse term
  biological_process 19870
    localization 5634
      establishment of localization 4940
        transport 4626
          nitrogen compound transport 1988
            nucleobase-containing compound transport 219
              regulation of nucleobase-containing compound transport 17
                negative regulation of nucleobase-containing compound transport + 2
                positive regulation of nucleobase-containing compound transport + 6
                regulation of ATP:ADP antiporter activity + 0
                regulation of RNA export from nucleus + 16
                regulation of RNA import into nucleus + 0
                regulation of hypoxanthine transport + 0
                regulation of nucleoside transport + 1
                regulation of thymine transport + 0
paths to the root