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ONTOLOGY REPORT - ANNOTATIONS

Term:small-subunit processome
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Accession:GO:0032040 term browser browse the term
Definition:A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Synonyms:exact_synonym: SSU processome


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small-subunit processome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor part_of IEA Ensembl GO_REF:0000107 NCBI chr17:20,027,351...20,129,255
Ensembl chr17:20,325,282...20,426,359 		JBrowse link
G BMS1 BMS1 ribosome biogenesis factor part_of IEA Ensembl GO_REF:0000107 NCBI chr10:39,757,627...39,806,401
Ensembl chr10:42,944,081...42,990,235 		JBrowse link
G C1H1orf131 chromosome 1 C1orf131 homolog part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:206,776,710...206,794,199
Ensembl chr 1:211,801,832...211,819,280 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 8:100,070,628...100,098,885
Ensembl chr 8:102,226,116...102,254,900 		JBrowse link
G DHX37 DEAH-box helicase 37 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:122,539,236...122,582,819
Ensembl chr12:126,823,006...126,865,933 		JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:51,593,030...51,608,687
Ensembl chr 5:53,234,921...53,250,079 		JBrowse link
G DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:96,528,951...96,542,869
Ensembl chr 1:95,260,910...95,272,834 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:7,102,619...7,108,594
Ensembl chr12:7,018,291...7,023,807 		JBrowse link
G EXOSC10 exosome component 10 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:9,829,922...9,865,092
Ensembl chr 1:11,050,727...11,087,241 		JBrowse link
G FBL fibrillarin part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,866,329...36,878,293
Ensembl chr19:45,413,978...45,425,930 		JBrowse link
G FCF1 FCF1 rRNA-processing protein part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr14:55,265,211...55,288,827
Ensembl chr14:74,112,253...74,133,348 		JBrowse link
G HEATR1 HEAT repeat containing 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:212,110,229...212,164,299
Ensembl chr 1:217,109,359...217,164,791 		JBrowse link
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:54,547,455...54,548,633
Ensembl chr15:74,141,156...74,141,710 		JBrowse link
G IMP4 IMP U3 small nucleolar ribonucleoprotein 4 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:28,629,282...28,634,248
Ensembl chr2B:131,255,225...131,259,434 		JBrowse link
G KRR1 KRR1 small subunit processome component homolog part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:73,021,700...73,037,582
Ensembl chr12:75,874,714...75,889,408 		JBrowse link
G LOC100973105 small ribosomal subunit protein eS7 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 4:180,845,832...180,846,513 JBrowse link
G LOC100975318 small ribosomal subunit protein eS1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:143,438,184...143,443,266
Ensembl chr 4:155,092,898...155,097,953 		JBrowse link
G LOC100986453 ribosomal RNA-processing protein 7 homolog A part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr22:23,403,954...23,415,442 JBrowse link
G LOC100988060 small ribosomal subunit protein eS1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:58,878,500...58,879,348 JBrowse link
G LOC100991622 small ribosomal subunit protein eS7-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr13:2,925,019...2,925,663 JBrowse link
G LOC117976524 small ribosomal subunit protein eS28 part_of IEA Ensembl GO_REF:0000107 NCBI chr17:30,739,902...30,740,525 JBrowse link
G LOC117978871 rRNA 2'-O-methyltransferase fibrillarin-like part_of IEA TreeGrafter GO_REF:0000118 Ensembl chr19:45,413,978...45,425,930 JBrowse link
G LOC129393595 small ribosomal subunit protein uS15 part_of IEA Ensembl GO_REF:0000107
G LOC134730372 small ribosomal subunit protein eS7 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118
G MPHOSPH10 M-phase phosphoprotein 10 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:71,176,704...71,196,443
Ensembl chr2A:72,677,428...72,697,592 		JBrowse link
G NAT10 N-acetyltransferase 10 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:34,082,304...34,127,793
Ensembl chr11:33,960,739...34,002,069 		JBrowse link
G NGDN neuroguidin part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:4,288,325...4,296,671
Ensembl chr14:22,382,334...22,390,718 		JBrowse link
G NOC4L nucleolar complex associated 4 homolog part_of IEA TreeGrafter GO_REF:0000118 NCBI chr12:129,803,084...129,809,412
Ensembl chr12:134,228,060...134,238,121 		JBrowse link
G NOL10 nucleolar protein 10 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2A:10,572,008...10,688,682
Ensembl chr2A:10,725,617...10,842,190 		JBrowse link
G NOL6 nucleolar protein 6 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:33,242,163...33,291,503
Ensembl chr 9:34,053,100...34,100,854 		JBrowse link
G NOL7 nucleolar protein 7 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:13,460,225...13,466,230
Ensembl chr 6:13,831,493...13,836,712 		JBrowse link
G NOP14 NOP14 nucleolar protein part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:3,080,444...3,105,999
Ensembl chr 4:2,982,906...3,007,548 		JBrowse link
G NOP56 NOP56 ribonucleoprotein part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr20:2,760,689...2,766,596
Ensembl chr20:2,523,619...2,529,509 		JBrowse link
G NOP58 NOP58 ribonucleoprotein part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:89,520,961...89,558,794
Ensembl chr2B:207,674,654...207,707,763 		JBrowse link
G PDCD11 programmed cell death 11 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr10:99,994,509...100,043,784
Ensembl chr10:103,455,649...103,504,784 		JBrowse link
G PNO1 partner of NOB1 homolog part_of IEA Ensembl GO_REF:0000107 NCBI chr2A:68,209,911...68,224,772
Ensembl chr2A:69,334,447...69,347,707 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299 		JBrowse link
G PWP2 PWP2 small subunit processome component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:30,364,398...30,389,202
Ensembl chr21:43,660,425...43,685,044 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:4,626,981...4,695,444
Ensembl chr 9:4,813,750...4,881,423 		JBrowse link
G RPS11 ribosomal protein S11 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:46,508,942...46,512,312
Ensembl chr19:55,432,486...55,435,808 		JBrowse link
G RPS12 ribosomal protein S12 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:130,592,127...130,595,211
Ensembl chr 6:134,698,833...134,701,952 		JBrowse link
G RPS13 ribosomal protein S13 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:17,132,811...17,136,172
Ensembl chr11:16,818,649...16,821,999 		JBrowse link
G RPS14 ribosomal protein S14 part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:145,869,410...145,875,038
Ensembl chr 5:151,873,605...151,879,128 		JBrowse link
G RPS15A ribosomal protein S15a part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr16:19,489,898...19,497,202 JBrowse link
G RPS16 ribosomal protein S16 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:36,531,284...36,534,156
Ensembl chr19:45,079,106...45,085,351 		JBrowse link
G RPS17 ribosomal protein S17 part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr15:63,056,604...63,060,436 JBrowse link
G RPS19 ribosomal protein S19 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:38,748,604...38,760,055
Ensembl chr19:47,254,157...47,264,953 		JBrowse link
G RPS19BP1 ribosomal protein S19 binding protein 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr22:20,435,302...20,439,059
Ensembl chr22:38,255,694...38,259,454 		JBrowse link
G RPS23 ribosomal protein S23 part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 5:33,005,488...33,007,881
Ensembl chr 5:33,323,233...33,326,569 		JBrowse link
G RPS24 ribosomal protein S24 part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr10:74,554,301...74,561,240
Ensembl chr10:77,217,228...77,238,519 		JBrowse link
G RPS27 ribosomal protein S27 part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 1:129,347,650...129,349,050
Ensembl chr 1:132,975,795...132,977,192 		JBrowse link
G RPS27A ribosomal protein S27a part_of IEA Ensembl GO_REF:0000107 NCBI chr2A:55,389,243...55,392,914
Ensembl chr2A:56,530,349...56,533,527 		JBrowse link
G RPS28 ribosomal protein S28 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:7,607,197...7,608,113
Ensembl chr19:8,458,321...8,459,250 		JBrowse link
G RPS4X ribosomal protein S4 X-linked part_of IEA Ensembl GO_REF:0000107 NCBI chr  X:61,508,955...61,513,689
Ensembl chr  X:71,593,324...71,598,042 		JBrowse link
G RPS5 ribosomal protein S5 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:55,396,001...55,403,624
Ensembl chr19:64,218,986...64,228,173 		JBrowse link
G RPS6 ribosomal protein S6 part_of ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 9:19,185,455...19,189,504
Ensembl chr 9:19,674,380...19,677,722 		JBrowse link
G RPS7 ribosomal protein S7 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:3,593,350...3,599,106
Ensembl chr2A:3,512,079...3,517,785 		JBrowse link
G RPS8 ribosomal protein S8 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:44,078,633...44,081,891
Ensembl chr 1:45,444,879...45,448,166 		JBrowse link
G RPS9 ribosomal protein S9 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:51,132,900...51,139,713
Ensembl chr19:59,974,377...59,981,236 		JBrowse link
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:51,874,829...51,883,339
Ensembl chr 3:53,103,621...53,112,127 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:22,567,285...22,582,257
Ensembl chr22:40,653,338...40,669,706 		JBrowse link
G TBL3 transducin beta like 3 part_of IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:725,629...732,350
Ensembl chr16:2,061,199...2,067,715 		JBrowse link
G UTP11 UTP11 small subunit processome component part_of IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:37,286,274...37,297,368
Ensembl chr 1:38,633,935...38,645,068 		JBrowse link
G UTP14A UTP14A small subunit processome component part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:119,032,503...119,056,780
Ensembl chr  X:129,330,213...129,353,407 		JBrowse link
G UTP14C UTP14C small subunit processome component part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:33,144,810...33,166,033
Ensembl chr13:51,905,055...51,908,218 		JBrowse link
G UTP15 UTP15 small subunit processome component part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:41,735,713...41,753,026
Ensembl chr 5:42,337,245...42,349,974 		JBrowse link
G UTP18 UTP18 small subunit processome component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:45,350,857...45,388,262
Ensembl chr17:50,220,865...50,254,218 		JBrowse link
G UTP20 UTP20 small subunit processome component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:98,865,121...98,972,914
Ensembl chr12:102,265,283...102,372,830 		JBrowse link
G UTP23 UTP23 small subunit processome component part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:113,441,014...113,462,103
Ensembl chr 8:115,984,167...116,066,606 		JBrowse link
G UTP25 UTP25 small subunit processome component part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 1:185,403,715...185,433,830
Ensembl chr 1:190,268,857...190,292,980 		JBrowse link
G UTP3 UTP3 small subunit processome component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:53,530,782...53,532,877
Ensembl chr 4:59,877,815...59,879,254 		JBrowse link
G UTP4 UTP4 small subunit processome component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:49,503,732...49,540,124
Ensembl chr16:68,891,923...68,927,421 		JBrowse link
G UTP6 UTP6 small subunit processome component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:24,888,804...24,927,451
Ensembl chr17:25,626,839...25,665,105 		JBrowse link
G WDR3 WD repeat domain 3 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:84,561,424...84,595,602
Ensembl chr 1:119,560,287...119,590,508 		JBrowse link
G WDR36 WD repeat domain 36 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:106,461,658...106,499,837
Ensembl chr 5:112,264,403...112,302,549 		JBrowse link
G WDR43 WD repeat domain 43 part_of IEA Ensembl GO_REF:0000107 NCBI chr2A:28,901,521...28,955,579
Ensembl chr2A:28,987,883...29,033,049 		JBrowse link
G WDR46 WD repeat domain 46 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:32,851,335...32,861,806
Ensembl chr 6:33,965,528...33,975,898 		JBrowse link
G WDR75 WD repeat domain 75 part_of IEA Ensembl GO_REF:0000107 NCBI chr2B:76,748,487...76,782,649
Ensembl chr2B:194,668,211...194,702,343 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr2B:103,371,459...103,468,419
Ensembl chr2B:221,972,742...222,071,235 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17180
    protein-containing complex 5908
      ribonucleoprotein complex 950
        preribosome 124
          small-subunit processome 79
paths to the root