LOC100986453 (ribosomal RNA-processing protein 7 homolog A) - Rat Genome Database

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Gene: LOC100986453 (ribosomal RNA-processing protein 7 homolog A) Pan paniscus
Analyze
Symbol: LOC100986453
Name: ribosomal RNA-processing protein 7 homolog A
RGD ID: 11944107
Description: INVOLVED IN cilium disassembly (ortholog); protein localization to nucleolus (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH common variable immunodeficiency 4 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribosomal RNA processing 7 homolog A; ribosomal RNA-processing protein 7 homolog A-like; RRP7A
RGD Orthologs
Human
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,345,303 - 52,354,275 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,036,158 - 55,047,655 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,403,954 - 23,415,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100986453
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22352,345,303 - 52,354,275 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12255,036,158 - 55,047,655 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02223,403,954 - 23,415,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RRP7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382242,508,344 - 42,519,796 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2242,508,344 - 42,519,796 (-)EnsemblGRCh38hg38GRCh38
GRCh372242,904,350 - 42,915,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,238,514 - 41,245,752 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map22q13.2NCBI
HuRef2225,870,427 - 25,881,511 (-)NCBIHuRef
CHM1_12242,864,113 - 42,875,639 (-)NCBICHM1_1
T2T-CHM13v2.02242,989,327 - 43,000,778 (-)NCBIT2T-CHM13v2.0
RRP7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666045100,344,055 - 100,351,037 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034948868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034948868   ⟹   XP_034804759
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22352,345,303 - 52,354,275 (-)NCBI
NHGRI_mPanPan12255,036,158 - 55,047,655 (-)NCBI
Mhudiblu_PPA_v02223,403,954 - 23,415,442 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034804759 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005140.1
Reference Protein Sequences
RefSeq Acc Id: XP_034804759   ⟸   XM_034948868
Protein Domains
Ribosomal RNA-processing protein 7 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000021416 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000023484.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1770 UniProtKB/TrEMBL
InterPro RRP7 UniProtKB/TrEMBL
  RRP7_C UniProtKB/TrEMBL
  Rrp7A_RRM UniProtKB/TrEMBL
NCBI Gene LOC100986453 ENTREZGENE
PANTHER PTHR13191 UniProtKB/TrEMBL
  RIBOSOMAL RNA-PROCESSING PROTEIN 7 HOMOLOG A-RELATED UniProtKB/TrEMBL
Pfam RRP7 UniProtKB/TrEMBL
UniProt A0A2R8ZMH2_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100986453  ribosomal RNA-processing protein 7 homolog A  RRP7A  ribosomal RNA processing 7 homolog A  Symbol and/or name change 5135510 APPROVED
2023-06-21 RRP7A  ribosomal RNA processing 7 homolog A  LOC100986453  ribosomal RNA-processing protein 7 homolog A  Symbol and/or name change 5135510 APPROVED
2023-04-25 LOC100986453  ribosomal RNA-processing protein 7 homolog A  RRP7A  ribosomal RNA processing 7 homolog A  Symbol and/or name change 5135510 APPROVED
2020-07-01 RRP7A  ribosomal RNA processing 7 homolog A  LOC100986453  ribosomal RNA-processing protein 7 homolog A-like  Symbol and/or name change 5135510 APPROVED