SNU13 (small nuclear ribonucleoprotein 13)

Gene: SNU13 (small nuclear ribonucleoprotein 13) Pan paniscus

Analyze

Symbol:

SNU13

Name:

small nuclear ribonucleoprotein 13

RGD ID:

11748889

Description:

ENCODES a protein that exhibits snoRNA binding (ortholog); INVOLVED IN single fertilization (ortholog); PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

NHP2 non-histone chromosome protein 2-like 1; NHP2-like protein 1; NHP2L1; SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	51,503,689 - 51,518,666 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	54,203,002 - 54,217,985 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	22,567,285 - 22,582,257 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	40,653,338 - 40,668,216 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	40,653,338 - 40,669,706 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

common variable immunodeficiency 4 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

box C/D snoRNP assembly (IEA)

maturation of LSU-rRNA (IEA)

maturation of SSU-rRNA (IEA)

mRNA processing (IEA)

mRNA splicing, via spliceosome (IEA)

ribosomal small subunit biogenesis (IEA)

ribosome biogenesis (IEA)

RNA splicing (IEA)

single fertilization (IEA,ISO)

Cellular Component

box C/D methylation guide snoRNP complex (IEA)

cytosolic large ribosomal subunit (IEA)

dense fibrillar component (IEA)

nucleolus (IEA)

nucleus (IEA)

precatalytic spliceosome (IEA)

protein-containing complex (IEA)

ribonucleoprotein complex (IEA)

small-subunit processome (IEA)

spliceosomal complex (IEA)

U2-type precatalytic spliceosome (IEA)

U4/U6 x U5 tri-snRNP complex (IEA,ISO)

U4atac snRNP (IEA)

Molecular Function

ATPase binding (IEA)

box C/D sno(s)RNA binding (IEA)

protein binding (ISO)

RNA binding (IEA)

snoRNA binding (IEA,ISO)

U3 snoRNA binding (IEA)

U4 snRNA binding (IEA)

U4atac snRNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

spliceosome pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SNU13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	51,503,689 - 51,518,666 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	54,203,002 - 54,217,985 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	22,567,285 - 22,582,257 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	40,653,338 - 40,668,216 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	40,653,338 - 40,669,706 (-)	Ensembl	panpan1.1		panPan2

SNU13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	41,673,933 - 41,690,480 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	41,673,933 - 41,690,504 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	42,069,937 - 42,084,871 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	40,399,883 - 40,414,859 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	40,394,437 - 40,403,056	NCBI
Celera	22	25,876,373 - 25,891,348 (-)	NCBI		Celera
Cytogenetic Map	22	q13.2	NCBI
HuRef	22	25,035,346 - 25,050,319 (-)	NCBI		HuRef
CHM1_1	22	42,029,949 - 42,044,925 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	42,152,913 - 42,169,470 (-)	NCBI		T2T-CHM13v2.0

Snu13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	81,925,546 - 81,931,799 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	81,924,726 - 81,931,799 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	82,041,345 - 82,047,598 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	82,040,525 - 82,047,598 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	81,871,775 - 81,878,028 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	81,868,600 - 81,874,853 (-)	NCBI		MGSCv36	mm8
Celera	15	84,163,054 - 84,169,281 (-)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	38.38	NCBI

Snu13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	115,445,415 - 115,451,008 (-)	NCBI		GRCr8
mRatBN7.2	7	113,565,293 - 113,570,887 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	113,565,295 - 113,570,872 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	1	259,715,711 - 259,716,758 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	115,321,804 - 115,327,398 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	117,545,304 - 117,550,897 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	117,514,748 - 117,520,342 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	123,282,754 - 123,287,721 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	123,282,754 - 123,287,721 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	123,267,419 - 123,272,386 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	120,425,064 - 120,430,031 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	120,459,293 - 120,464,261 (-)	NCBI
Celera	7	109,881,746 - 109,886,713 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Snu13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	27,159,816 - 27,172,696 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	27,160,985 - 27,172,648 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNU13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	23,622,897 - 23,631,526 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	23,618,293 - 23,631,004 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	23,556,457 - 23,564,953 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	24,367,888 - 24,376,525 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	24,363,290 - 24,376,531 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	24,084,805 - 24,093,434 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	24,405,729 - 24,414,316 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	24,580,074 - 24,588,705 (+)	NCBI		UU_Cfam_GSD_1.0

Snu13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	7,279,382 - 7,285,470 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	289,770 - 297,670 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	289,834 - 295,883 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNU13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	6,885,067 - 6,900,022 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	6,891,014 - 6,900,026 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	4,262,171 - 4,271,206 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNU13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	24,209,356 - 24,223,431 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	24,206,653 - 24,216,686 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	101,189,312 - 101,204,220 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snu13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	6,972,618 - 6,985,033 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	6,972,557 - 6,985,033 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008967402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008967403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057300979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000029270 ⟹ ENSPPAP00000007173

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	40,653,338 - 40,668,216 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000029273 ⟹ ENSPPAP00000007175

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	40,653,338 - 40,662,041 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000029276 ⟹ ENSPPAP00000007177

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	22	40,654,343 - 40,669,706 (-)	Ensembl

RefSeq Acc Id:

XM_008967402 ⟹ XP_008965650

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	51,503,689 - 51,518,666 (-)	NCBI
NHGRI_mPanPan1	22	54,203,002 - 54,217,985 (-)	NCBI
Mhudiblu_PPA_v0	22	22,567,285 - 22,582,257 (-)	NCBI
PanPan1.1	22	40,653,338 - 40,668,216 (-)	NCBI

Sequence:

show sequence

GTTTCCGCGCCAGTGCCCCCGTAGAGGGCGGGGCCCACTCGCTCGAGTAGCGCCACCTTCGCTT
CCGGCCGCGCGGGGCCATTTCCGCTGCTGCTTCTGTGAGTTTTTCCGGTGCACGCGAGTGCTTC
TCAGACGTCAGCTGCGCTCCCCTAGGAGTGCTGAGCCCGCGGAACCGCAGCCATGACTGAGGCT
GATGTGAATCCGAAGGCCTATCCCCTTGCCGATGCCCACCTCACCAAGAAGCTACTGGACCTCG
TTCAGCAGTCATGTAACTATAAGCAGCTTCGGAAAGGAGCCAATGAGGCCACCAAAACCCTCAA
CAGGGGCATCTCTGAGTTCATCGTGATGGCTGCAGACGCCGAGCCACTGGAGATCATTCTGCAC
CTCCCGCTGCTGTGTGAAGACAAGAATGTGCCCTACGTGTTTGTGCGCTCCAAGCAGGCCCTGG
GGAGAGCCTGTGGGGTCTCCAGGCCTGTCATCGCCTGTTCTGTCACCATCAAAGAAGGCTCGCA
GCTGAAACAGCAGATCCAGTCCATTCAGCAGTCCATTGAAAGGCTCTTAGTCTAAACCTGTGGC
CTCTGCCACGTGCTCCCTGCCAGCTTCCCCCCTGAGGTTGTGTATCATATTATCTGTGTTAGCA
TGTAGTATTTTCAGCTACTCTCTATTGTTATAAAATGTAGTACTAAATCTGGTTTCTGGATTTT
TGTGTTGTTTTTGTTCTGTTTTACAGGGTTGCTATCCCCCTTCCTTTCCTCCCTCCCTCTGCCA
TCCTTCATCCTTTTATCCTCCCTTTTTGGAACAAGTGTTCAGAGCAGACAGAAGCAGGGTGGTG
GCACCGTTGAAAGGCAGAAAGAGCCAGGAGAAAGCTGATGGAGCCAGGACAGAGATCTGGTTCC
AGCTTTCAGCCACTAGCTTCCTGTTGTGTGCAGGGTGTGGTGGAATTAAACAGCATTCATTGTG
TGTCCCTGTGCCTGGCACACAGAATCATTCATACGTGTTCAAGTGATCAAAGGGTTTCATTTGC
TCTTGGGGGATTAGGTATCATTTGGGGAGGAAGCATGTGTTCTGTGAGGTTGTTCGGCTATGTC
CAAGTGTCGTTTACTAATGTACCCCTGCTGTTTGCTTTTGGTAATGTGATGTTGATGTTCTCCC
CCTACCCCCAACCATGCCCTTGAGGGTAGCAGGGCAGCAGCATACCAAAGAGATGTGCTGCAGG
ACTCCGGAGGCGGCCTGGGTGGGTGAGCCATGGGTCAGTTGACCTGGGTCTTGAAAGAGTCGGG
AGTGACAAGCTCAGAGAGCATGAACTGATGCTGGCATGAAGGATTCCAGGAAGATCATGGAGAC
CTGGCTGGCAGCTGTAAACAGAGATGGTGGAGTCCAAGGAAACAGCCTGTCTCTGGTGAATGGG
ACTTTCTTTGGTGGACACTTGGCACCAGCTCTGAGAGCCCTTCCCCTGTGTCCTGCCACCGTGT
GGGTCAGATGTACTCTCTGTCACATGAGGAGAGTGCTAGTTCATGTGTTCTCCATTCTTGTGAG
CATCCTAATAAAGAAATCTGTTCCATTTTGATGACA

hide sequence

RefSeq Acc Id:

XM_057300979 ⟹ XP_057156962

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	23	51,503,689 - 51,512,342 (-)	NCBI
NHGRI_mPanPan1	22	54,203,002 - 54,211,663 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008965650	(Get FASTA)	NCBI Sequence Viewer
	XP_057156962	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000007173
	ENSPPAP00000007173.1
	ENSPPAP00000007175.1
	ENSPPAP00000007177.1

RefSeq Acc Id:	XP_008965650 ⟸ XM_008967402
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZRL7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV hide sequence

RefSeq Acc Id:

ENSPPAP00000007173 ⟸ ENSPPAT00000029270

RefSeq Acc Id:

ENSPPAP00000007175 ⟸ ENSPPAT00000029273

RefSeq Acc Id:

ENSPPAP00000007177 ⟸ ENSPPAT00000029276

RefSeq Acc Id:	XP_057156962 ⟸ XM_057300979
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZRL7 (UniProtKB/TrEMBL)

Protein Domains

Ribosomal protein eL8/eL30/eS12/Gadd45

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000026299	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000029270.1	UniProtKB/TrEMBL
	ENSPPAT00000029273.1	UniProtKB/TrEMBL
	ENSPPAT00000029276.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1330.30	UniProtKB/TrEMBL
InterPro	H/ACA_rnp_Nhp2_euk	UniProtKB/TrEMBL
	L30e-like	UniProtKB/TrEMBL
	Ribosomal_L7Ae/L30e/S12e/Gad45	UniProtKB/TrEMBL
	Ribosomal_L7Ae/L8/Nhp2	UniProtKB/TrEMBL
	Ribosomal_L7Ae_CS	UniProtKB/TrEMBL
KEGG Report	pps:100968235	UniProtKB/TrEMBL
NCBI Gene	SNU13	ENTREZGENE
PANTHER	NHP2-LIKE PROTEIN 1	UniProtKB/TrEMBL
	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Ribosomal_L7Ae	UniProtKB/TrEMBL
PRINTS	L7ARS6FAMILY	UniProtKB/TrEMBL
	NUCLEARHMG	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L7AE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55315	UniProtKB/TrEMBL
UniProt	A0A2R8ZQF4_PANPA	UniProtKB/TrEMBL
	A0A2R8ZRL7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-21	SNU13	small nuclear ribonucleoprotein 13		SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

RGD Manual Annotations