Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:neuron projection cytoplasm
go back to main search page
Accession:GO:0120111 term browser browse the term
Definition:All of the contents of a plasma membrane bounded neuron projection, excluding the plasma membrane surrounding the projection.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
neuron projection cytoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit ISO MMO:0000293, MMO:0000656 RGD PMID:19385992 RGD:152995360 NCBI chrNW_004624758:22,182,468...22,200,076
Ensembl chrNW_004624758:22,182,951...22,200,063 		JBrowse link
axon cytoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr10 actin related protein 10 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624884:3,275,358...3,313,222
Ensembl chrNW_004624884:3,275,328...3,314,343 		JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624869:2,459,370...2,741,529
Ensembl chrNW_004624869:2,459,947...2,741,328 		JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624768:18,476,562...18,507,933
Ensembl chrNW_004624768:18,476,447...18,507,998 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624828:6,710,081...6,750,315
Ensembl chrNW_004624828:6,710,025...6,749,434 		JBrowse link
G Arl8a ARF like GTPase 8A located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624807:8,594,097...8,602,640
Ensembl chrNW_004624807:8,593,619...8,602,647 		JBrowse link
G Arl8b ARF like GTPase 8B located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624773:15,785,883...15,833,832
Ensembl chrNW_004624773:15,785,339...15,832,668 		JBrowse link
G Armcx3 armadillo repeat containing X-linked 3 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624902:957,669...962,015
Ensembl chrNW_004624902:957,669...962,039 		JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624802:12,299,866...12,304,295
Ensembl chrNW_004624802:12,290,688...12,304,712 		JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624755:23,031,649...23,033,282 JBrowse link
G Bsn bassoon presynaptic cytomatrix protein located_in ISO PMID:19380881 SynGO-UCL PMID:19380881 RGD:12793047 NCBI chrNW_004624730:3,498,118...3,600,488
Ensembl chrNW_004624730:3,498,257...3,593,450 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO RGD PMID:10408625 RGD:11556226 (All species) (All species) NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624756:10,810,368...10,932,801
Ensembl chrNW_004624756:10,810,413...10,942,034 		JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 located_in ISO PMID:19380881 SynGO-UCL PMID:19380881 RGD:12793047 NCBI chrNW_004624813:2,490,745...2,826,230
Ensembl chrNW_004624813:2,490,706...2,825,412 		JBrowse link
G Dynll1 dynein light chain LC8-type 1 ISO RGD PMID:19641106 RGD:13207432 NCBI chrNW_004624747:13,169,865...13,172,592
Ensembl chrNW_004624747:13,169,865...13,172,525 		JBrowse link
G Hsbp1 heat shock factor binding protein 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624746:3,686,523...3,690,585
Ensembl chrNW_004624746:3,685,189...3,690,642 		JBrowse link
G Kif3a kinesin family member 3A ISO RGD PMID:15266650 RGD:11049593 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Madd MAP kinase activating death domain located_in ISO (MGI:6189386|PMID:18849981) GOC PMID:18849981 MGI:6189386 NCBI chrNW_004624767:1,421,603...1,459,738
Ensembl chrNW_004624767:1,421,603...1,459,507 		JBrowse link
G Nefl neurofilament light chain located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624758:20,063,109...20,068,459
Ensembl chrNW_004624758:20,062,685...20,068,609 		JBrowse link
G Neto1 neuropilin and tolloid like 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624806:8,013,955...8,128,867
Ensembl chrNW_004624806:8,014,353...8,127,078 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Ranbp1 RAN binding protein 1 ISO RGD PMID:18667152 RGD:9835000 NCBI chrNW_004624747:728,123...736,045
Ensembl chrNW_004624747:728,014...736,043 		JBrowse link
G Rangap1 Ran GTPase activating protein 1 ISO RGD PMID:18667152 RGD:9835000 NCBI chrNW_004624752:7,246,161...7,277,702
Ensembl chrNW_004624752:7,246,193...7,277,701 		JBrowse link
G Snapin SNAP associated protein located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624885:3,490,321...3,491,963
Ensembl chrNW_004624885:3,490,321...3,491,946 		JBrowse link
G Sybu syntabulin located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624763:8,657,276...8,742,161
Ensembl chrNW_004624763:8,657,285...8,766,586 		JBrowse link
G Tmem108 transmembrane protein 108 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624730:9,314,308...9,683,324
Ensembl chrNW_004624730:9,522,166...9,683,365 		JBrowse link
G Trak1 trafficking kinesin protein 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624730:77,330,449...77,470,156
Ensembl chrNW_004624730:77,331,992...77,399,741 		JBrowse link
G Trak2 trafficking kinesin protein 2 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624899:275,291...335,555
Ensembl chrNW_004624899:300,096...332,392 		JBrowse link
G Trim46 tripartite motif containing 46 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624885:2,344,250...2,354,390
Ensembl chrNW_004624885:2,343,991...2,354,288 		JBrowse link
G Zc3h14 zinc finger CCCH-type containing 14 located_in ISO (PMID:28793261) FlyBase PMID:28793261 NCBI chrNW_004624734:13,734,406...13,787,341
Ensembl chrNW_004624734:13,734,401...13,788,057 		JBrowse link
dendrite cytoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd12 abhydrolase domain containing 12, lysophospholipase located_in ISO (MGI:6094388|PMID:27307232) UniProt PMID:27307232 MGI:6094388 NCBI chrNW_004624939:212,910...272,112
Ensembl chrNW_004624939:213,007...273,786 		JBrowse link
G Abhd13 abhydrolase domain containing 13 located_in ISO (MGI:6094388|PMID:27307232) UniProt PMID:27307232 MGI:6094388 NCBI chrNW_004624793:3,681,673...3,697,495
Ensembl chrNW_004624793:3,681,673...3,695,654 		JBrowse link
G Ada adenosine deaminase ISO RGD PMID:2253038 RGD:2291858 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883 		JBrowse link
G Camk2a calcium/calmodulin dependent protein kinase II alpha located_in ISO PMID:1419001 BHF-UCL PMID:1419001 RGD:68238 NCBI chrNW_004624774:9,526,323...9,585,647
Ensembl chrNW_004624774:9,526,323...9,585,649 		JBrowse link
G Canx calnexin ISO RGD PMID:10461883 RGD:2313156 NCBI chrNW_004624733:42,588,680...42,616,624 JBrowse link
G Cdkl5 cyclin dependent kinase like 5 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624829:3,288,239...3,479,620
Ensembl chrNW_004624829:3,356,580...3,472,832 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 located_in ISO PMID:1419001 BHF-UCL PMID:1419001 RGD:68238 NCBI chrNW_004624786:9,811,201...9,835,660
Ensembl chrNW_004624786:9,811,780...9,837,100 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 ISO RGD PMID:16650615 RGD:4890439 NCBI chrNW_004624752:26,971,266...26,979,483
Ensembl chrNW_004624752:26,971,187...26,981,929 		JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 ISO RGD PMID:17207780 RGD:1642304 NCBI chrNW_004624848:1,132,939...1,261,110
Ensembl chrNW_004624848:1,135,032...1,261,087 		JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 ISO RGD PMID:15844209 RGD:1642495 NCBI chrNW_004624810:2,731,573...3,407,186
Ensembl chrNW_004624810:2,733,118...3,401,909 		JBrowse link
G Grik3 glutamate ionotropic receptor kainate type subunit 3 ISO RGD PMID:15844209 RGD:1642495 NCBI chrNW_004624764:19,649,780...19,860,077
Ensembl chrNW_004624764:19,655,782...19,860,119 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in ISO (MGI:3530979|PMID:15312650) GOC PMID:15312650 MGI:3530979 NCBI chrNW_004624771:14,756,088...14,766,106
Ensembl chrNW_004624771:14,756,100...14,765,832 		JBrowse link
G Hpca hippocalcin ISO RGD PMID:8233019 RGD:9686436 NCBI chrNW_004624764:15,990,910...15,999,617
Ensembl chrNW_004624764:15,990,729...15,999,615 		JBrowse link
G Kcnab1 potassium voltage-gated channel subfamily A regulatory beta subunit 1 ISO RGD PMID:8756417 RGD:9743934 NCBI chrNW_004624730:33,701,386...34,141,269
Ensembl chrNW_004624730:33,876,381...34,139,594 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (MGI:5424048|PMID:22514311) GOC PMID:22514311 MGI:5424048 NCBI chrNW_004624764:5,682,800...5,724,852
Ensembl chrNW_004624764:5,682,829...5,724,656 		JBrowse link
G Kif5a kinesin family member 5A located_in ISO (MGI:5819356|PMID:11986669) GOC PMID:11986669 MGI:5819356 NCBI chrNW_004624802:10,375,132...10,409,575
Ensembl chrNW_004624802:10,375,774...10,409,566 		JBrowse link
G Klhl17 kelch like family member 17 ISO RGD PMID:12063253 RGD:625502 NCBI chrNW_004624818:8,545,562...8,551,348
Ensembl chrNW_004624818:8,546,137...8,550,603 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 located_in ISO (PMID:21696411) BHF-UCL PMID:21696411 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Map2 microtubule associated protein 2 located_in ISO PMID:3517689 ARUK-UCL PMID:3517689 RGD:13514082 NCBI chrNW_004624765:6,476,544...6,758,959
Ensembl chrNW_004624765:6,476,346...6,546,116 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO RGD PMID:9714150 RGD:2293331 NCBI chrNW_004624781:6,222,365...6,285,398
Ensembl chrNW_004624781:6,222,365...6,285,531 		JBrowse link
G Map2k4 mitogen-activated protein kinase kinase 4 ISO RGD PMID:9714150 RGD:2293331 NCBI chrNW_004624786:14,457,382...14,597,027
Ensembl chrNW_004624786:14,457,452...14,597,027 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO RGD PMID:9714150 RGD:2293331 NCBI chrNW_004624747:1,296,062...1,389,674
Ensembl chrNW_004624747:1,296,221...1,389,757 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO RGD PMID:9714150 RGD:2293331 NCBI chrNW_004624928:1,442,216...1,494,275
Ensembl chrNW_004624928:1,439,146...1,494,266 		JBrowse link
G Oprm1 opioid receptor mu 1 ISO RGD PMID:16194531 RGD:2316627 NCBI chrNW_004624785:4,147,079...4,195,712
Ensembl chrNW_004624785:4,032,689...4,196,186 		JBrowse link
G Pura purine rich element binding protein A located_in ISO (MGI:3530979|PMID:15312650) GOC PMID:15312650 MGI:3530979 NCBI chrNW_004624743:32,878,677...32,888,650
Ensembl chrNW_004624743:32,884,552...32,885,517 		JBrowse link
G Sfpq splicing factor proline and glutamine rich located_in ISO (MGI:3530979|PMID:15312650) GOC PMID:15312650 MGI:3530979 NCBI chrNW_004624764:18,223,845...18,239,748
Ensembl chrNW_004624764:18,228,365...18,240,340 		JBrowse link
G Sod1 superoxide dismutase 1 located_in ISO (PMID:17324120) UniProt PMID:17324120 NCBI chrNW_004624745:20,032,003...20,037,958
Ensembl chrNW_004624745:20,032,011...20,037,958 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624790:6,173,160...6,229,487
Ensembl chrNW_004624790:6,172,762...6,229,487 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 located_in IEA GOC GO_REF:0000108 NCBI chrNW_004624744:17,434,733...17,726,348
Ensembl chrNW_004624744:17,434,686...17,727,127 		JBrowse link
G Uhmk1 U2AF homology motif kinase 1 located_in ISO (MGI:3835232|PMID:19015237)
(PMID:19015237)		 BHF-UCL PMID:19015237 MGI:3835232 NCBI chrNW_004624826:941,200...966,470
Ensembl chrNW_004624826:941,190...962,466 		JBrowse link
G Wls Wnt ligand secretion mediator ISO RGD PMID:22001156 RGD:7488965 NCBI chrNW_004624742:27,481,480...27,570,439
Ensembl chrNW_004624742:27,481,427...27,570,439 		JBrowse link
G Zc3h14 zinc finger CCCH-type containing 14 located_in ISO (PMID:28793261) FlyBase PMID:28793261 NCBI chrNW_004624734:13,734,406...13,787,341
Ensembl chrNW_004624734:13,734,401...13,788,057 		JBrowse link
dendritic spine cytoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap2 BAR/IMD domain containing adaptor protein 2 ISO RGD PMID:15673667 RGD:9684988 NCBI chrNW_004624801:10,106,815...10,173,191
Ensembl chrNW_004624801:10,106,750...10,173,188 		JBrowse link
neuronal ribonucleoprotein granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity regulated cytoskeleton associated protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624735:13,968,628...13,972,026
Ensembl chrNW_004624735:13,968,654...13,972,026 		JBrowse link
G Ckap5 cytoskeleton associated protein 5 located_in ISO (PMID:23936366) MGI PMID:23936366 NCBI chrNW_004624767:1,761,983...1,874,534
Ensembl chrNW_004624767:1,761,733...1,874,534 		JBrowse link
G Eif4ebp2 eukaryotic translation initiation factor 4E binding protein 2 is_active_in ISO (PMID:30765518) UniProt PMID:30765518 NCBI chrNW_004624754:4,523,616...4,553,994
Ensembl chrNW_004624754:4,523,661...4,549,936 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 located_in
is_active_in		 ISO (MGI:3798322|PMID:18539120), (PMID:21933836)
(PMID:30765518)
PMID:17881655		 UniProt
MGI		 PMID:17881655 PMID:18539120 PMID:21933836 PMID:30765518 MGI:3798322 RGD:8553560 NCBI chrNW_004624883:645,524...681,705
Ensembl chrNW_004624883:645,449...682,292 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:14523087 RGD:9685480 NCBI chrNW_004624739:4,343,164...4,353,123
Ensembl chrNW_004624739:4,343,246...4,352,066 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:21471000 RGD:9999187 NCBI chrNW_004624733:41,387,068...41,403,701
Ensembl chrNW_004624733:41,398,123...41,403,617 		JBrowse link
G Htt huntingtin ISO RGD PMID:22355657 RGD:6902916 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Kif3c kinesin family member 3C located_in ISO PMID:17881655 MGI PMID:17881655 RGD:8553560 NCBI chrNW_004624738:8,128,594...8,171,638
Ensembl chrNW_004624738:8,127,797...8,171,697 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624893:680,929...684,251
Ensembl chrNW_004624893:681,167...684,251 		JBrowse link
G Uhmk1 U2AF homology motif kinase 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624826:941,200...966,470
Ensembl chrNW_004624826:941,190...962,466 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 15769
    cellular anatomical structure 15669
      cytoplasm 9890
        cytoplasmic region 285
          plasma membrane bounded cell projection cytoplasm 248
            neuron projection cytoplasm 71
              axon cytoplasm 29
              dendrite cytoplasm + 33
              neuronal ribonucleoprotein granule 10
Path 2
Term Annotations click to browse term
  cellular_component 15769
    cellular anatomical structure 15669
      intracellular anatomical structure 12410
        cytoplasm 9890
          cytoplasmic region 285
            plasma membrane bounded cell projection cytoplasm 248
              neuron projection cytoplasm 71
                axon cytoplasm 29
                dendrite cytoplasm + 33
                neuronal ribonucleoprotein granule 10
paths to the root