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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleobase biosynthetic process
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Accession:GO:0019856 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Synonyms:exact_synonym: pyrimidine base anabolism;   pyrimidine base biosynthesis;   pyrimidine base biosynthetic process;   pyrimidine base formation;   pyrimidine base synthesis


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pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 cytidine 5'-triphosphate synthase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:120,397,065...120,427,473
Ensembl chr 4:120,397,065...120,427,473 		JBrowse link
G Ctps2 cytidine 5'-triphosphate synthase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:161,684,264...161,817,537
Ensembl chr  X:161,684,234...161,815,504 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408 		JBrowse link
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in
acts_upstream_of_or_within		 ISO
IBA
ISS		 RGD
GO_Central
UniProt
MGI		 PMID:1476792 GO_REF:0000008 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:5132591 NCBI chr 5:31,211,964...31,235,823
Ensembl chr 5:31,212,124...31,235,823 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
G Cps1 carbamoyl-phosphate synthetase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:67,151,294...67,270,426
Ensembl chr 1:67,162,185...67,270,418 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in ISO
IEA
IBA		 RGD
GO_Central
InterPro		 PMID:1476792 GO_REF:0000002 GO_REF:0000033 GO_REF:0000096 RGD:5132591 NCBI chr 8:110,319,876...110,335,330
Ensembl chr 8:110,317,975...110,335,305 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IDA (PMID:23429704) CACAO PMID:23429704 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA InterPro GO_REF:0000002 NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28638
    cellular process 18389
      metabolic process 11660
        biosynthetic process 8291
          nucleobase biosynthetic process 17
            pyrimidine nucleobase biosynthetic process 8
              'de novo' pyrimidine nucleobase biosynthetic process 6
              cytosine biosynthetic process 0
              pyrimidine nucleobase salvage + 0
              thymine biosynthetic process 0
              uracil biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 28638
    cellular process 18389
      metabolic process 11660
        primary metabolic process 10273
          nucleobase-containing compound metabolic process 5752
            nucleobase-containing small molecule metabolic process 712
              nucleobase metabolic process 44
                pyrimidine nucleobase metabolic process 22
                  pyrimidine nucleobase biosynthetic process 8
                    'de novo' pyrimidine nucleobase biosynthetic process 6
                    cytosine biosynthetic process 0
                    pyrimidine nucleobase salvage + 0
                    thymine biosynthetic process 0
                    uracil biosynthetic process + 0
paths to the root