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rRNA catabolic process - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS


Term:rRNA catabolic process
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Accession:GO:0016075 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
Synonyms:exact_synonym: rRNA breakdown;   rRNA catabolism;   rRNA degradation


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show annotations for term's descendants           Sort by:
rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:68,067,119...68,089,948 JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO
IBA
(PMID:20368444)
GO_REF:0000033
RGD
GO_Central
PMID:20368444 GO_REF:0000033 NCBI chr15:75,820,040...75,850,450
Ensembl chr15:75,823,436...75,850,642
JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease involved_in ISO
IBA
(PMID:20368444), (PMID:20531389)
GO_REF:0000033
RGD
GO_Central
PMID:20368444 PMID:20531389 GO_REF:0000033 NCBI chr 8:64,803,925...64,840,306
Ensembl chr 8:64,803,927...64,840,165
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:176,726,454...176,743,289
Ensembl chr 1:176,726,454...176,743,289
JBrowse link
G Exosc4 exosome component 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573
JBrowse link
G Exosc5 exosome component 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265
JBrowse link
G Exosc6 exosome component 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,022,171...39,023,585
Ensembl chr19:39,022,183...39,023,515
JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270
JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928
JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051
JBrowse link
G Slfn14 schlafen family member 14 involved_in ISO (PMID:25996083) RGD PMID:25996083 NCBI chr10:68,076,326...68,087,794 JBrowse link
G Slfn4 schlafen family member 4 involved_in ISO (PMID:34272366), (PMID:35104454) RGD PMID:34272366 PMID:35104454 NCBI chr10:67,994,601...68,018,141
Ensembl chr10:68,000,028...68,018,138
Ensembl chr10:68,000,028...68,018,138
JBrowse link
G Slfn9 schlafen family member 9 involved_in IDA PMID:29563550 UniProt PMID:29563550 RGD:13601999 NCBI chr10:67,909,105...67,955,912
Ensembl chr10:67,909,106...67,925,383
JBrowse link
G Trir telomerase RNA component interacting RNase involved_in ISO (PMID:28322335) RGD PMID:28322335 NCBI chr19:23,125,083...23,128,502
Ensembl chr19:23,125,083...23,128,510
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO
IBA
(PMID:20368444)
GO_REF:0000033
RGD
GO_Central
PMID:20368444 GO_REF:0000033 NCBI chr 8:96,527,871...96,637,385
Ensembl chr 8:96,528,195...96,632,739
JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746
JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx49 DEAD-box helicase 49 involved_in ISO (PMID:29618122) RGD PMID:29618122 NCBI chr16:19,125,388...19,133,042
Ensembl chr16:19,125,384...19,133,616
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20535
    cellular process 19524
      metabolic process 12166
        catabolic process 2917
          macromolecule catabolic process 1677
            nucleic acid catabolic process 420
              RNA catabolic process 390
                rRNA catabolic process 17
                  cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                  nonfunctional rRNA decay 1
                  regulation of rRNA catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 20535
    cellular process 19524
      metabolic process 12166
        primary metabolic process 10753
          nucleobase-containing compound metabolic process 5944
            nucleic acid metabolic process 5328
              RNA metabolic process 4746
                RNA catabolic process 390
                  rRNA catabolic process 17
                    cytoplasmic polyadenylation-dependent rRNA catabolic process 0
                    nonfunctional rRNA decay 1
                    regulation of rRNA catabolic process + 1
paths to the root