Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:detection of bacterium
go back to main search page
Accession:GO:0016045 term browser browse the term
Definition:The series of events in which a stimulus from a bacterium is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of bacteria
 related_synonym: perception of bacteria;   perception of bacterium
 alt_id: GO:0009598;   GO:0009681


show annotations for term's descendants           Sort by:
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Naip5 NLR family, apoptosis inhibitory protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:33,289,785...33,342,807
Ensembl chr 2:31,557,817...31,608,634 		JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 involved_in IBA
ISO		 GO_REF:0000033
(PMID:21874021)		 GO_Central
RGD		 PMID:21874021 GO_REF:0000033 NCBI chr 2:33,241,520...33,293,184
Ensembl chr 2:31,507,424...31,570,542 		JBrowse link
G Nlrc4 NLR family, CARD domain containing 4 involved_in ISO
IBA
ISS		 (PMID:15107016)
(PMID:22885697)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:15107016 PMID:22885697 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:26,743,658...26,771,783
Ensembl chr 6:20,995,266...21,018,248 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Parg poly (ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO MGI:3052740 (PMID:15282315) RGD PMID:15282315 NCBI chr16:7,442,696...7,550,585
Ensembl chr16:7,436,476...7,544,273 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 1:87,659,863...87,665,048
Ensembl chr 1:78,531,815...78,537,001 		JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 7:12,069,414...12,082,437
Ensembl chr 7:11,418,880...11,427,773 		JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:180,174,931...180,186,007
Ensembl chr 2:177,477,407...177,490,736
Ensembl chr 2:177,477,407...177,490,736 		JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:178,500,238...178,669,328
Ensembl chr 2:176,218,519...176,242,251 		JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in IBA
ISO		 GO_REF:0000033
(PMID:21217009)		 GO_Central
RGD		 PMID:21217009 GO_REF:0000033 NCBI chr 1:77,920,781...77,939,284
Ensembl chr 1:68,891,949...68,909,743 		JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Tlr6 toll-like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,715,809...43,727,019
Ensembl chr14:43,362,164...43,375,685 		JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll-like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,737,761...43,750,389
Ensembl chr14:43,384,932...43,397,125 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    biological process involved in interspecies interaction between organisms 1994
      response to other organism 1872
        response to bacterium 1007
          detection of bacterium 15
            detection of bacterial lipoprotein + 4
            detection of symbiotic bacterium 0
Path 2
Term Annotations click to browse term
  biological_process 20553
    response to stimulus 11038
      response to external stimulus 2793
        response to external biotic stimulus 1888
          response to other organism 1872
            response to bacterium 1007
              detection of bacterium 15
                detection of bacterial lipoprotein + 4
                detection of symbiotic bacterium 0
paths to the root