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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside diphosphate biosynthetic process
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Accession:GO:0009188 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate anabolism;   ribonucleoside diphosphate biosynthesis;   ribonucleoside diphosphate formation;   ribonucleoside diphosphate synthesis

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ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO (PMID:24767988) UniProt PMID:24767988 NCBI chrNW_004624742:29,547,237...29,574,160 JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in ISO
IEA		 RGD
UniProt		 PMID:19049516 GO_REF:0000104 RGD:5134369 NCBI chrNW_004624760:7,684,098...7,693,051
Ensembl chrNW_004624760:7,684,109...7,693,405 		JBrowse link
G Ak2 adenylate kinase 2 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:5123889 GO_REF:0000002 GO_REF:0000104 RGD:5490208 NCBI chrNW_004624764:16,089,357...16,113,275 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:5010295 PMID:5123889 RGD:5490208 RGD:5490216 NCBI chrNW_004624736:9,428,736...9,494,645 JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:3010881 GO_REF:0000118 RGD:5133253 NCBI chrNW_004624859:5,452,694...5,495,840 JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004624937:892,840...898,799
Ensembl chrNW_004624937:892,854...898,799 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) MGI PMID:25678555 NCBI chrNW_004624738:9,318,213...9,340,765
Ensembl chrNW_004624738:9,318,232...9,340,925 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:3010881 GO_REF:0000118 RGD:5133253 NCBI chrNW_004624859:5,452,694...5,495,840 JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chrNW_004624746:14,254,811...14,268,034
Ensembl chrNW_004624746:14,254,193...14,268,034 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341)
(PMID:6154574)		 MGI PMID:2419341 PMID:6154574 NCBI chrNW_004624731:761,235...780,355
Ensembl chrNW_004624731:761,210...779,321 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9086
      biosynthetic process 6359
        organophosphate biosynthetic process 461
          nucleoside phosphate biosynthetic process 213
            nucleoside diphosphate biosynthetic process 12
              ribonucleoside diphosphate biosynthetic process 9
                purine ribonucleoside diphosphate biosynthetic process + 4
                pyrimidine ribonucleoside diphosphate biosynthetic process + 4
Path 2
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9086
      cellular metabolic process 7538
        phosphorus metabolic process 1647
          phosphate-containing compound metabolic process 1622
            nucleoside phosphate metabolic process 494
              nucleoside diphosphate metabolic process 120
                nucleoside diphosphate biosynthetic process 12
                  ribonucleoside diphosphate biosynthetic process 9
                    purine ribonucleoside diphosphate biosynthetic process + 4
                    pyrimidine ribonucleoside diphosphate biosynthetic process + 4
paths to the root