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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside diphosphate biosynthetic process
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Accession:GO:0009133 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate anabolism;   nucleoside diphosphate biosynthesis;   nucleoside diphosphate formation;   nucleoside diphosphate synthesis


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nucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 acts_upstream_of_or_within ISO
IEA 		(PMID:15122917)
GO_REF:0000107 		RGD
Ensembl		 PMID:15122917 GO_REF:0000107 NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07059925.1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000104 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 Ensembl chr 4:44,966,627...44,967,325 JBrowse link
G Ak1 adenylate kinase 1 involved_in IDA
IEA 		GO_REF:0000104 UniProt
RGD		 PMID:19049516 GO_REF:0000104, RGD:5134369 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041 		JBrowse link
G Ak2 adenylate kinase 2 involved_in IDA
IEA
IBA 		GO_REF:0000104
GO_REF:0000033
GO_REF:0000002 		UniProt
GO_Central
InterPro
RGD		 PMID:5123889 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104, RGD:5490208 NCBI chr 5:141,308,650...141,364,633
Ensembl chr 5:141,346,063...141,364,632 		JBrowse link
G Ak2-ps3 adenylate kinase 2, pseudogene 3 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000104 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 4:44,966,606...44,967,403
Ensembl chr 4:44,966,627...44,967,325 		JBrowse link
G Ak3 adenylate kinase 3 involved_in IDA
IEA 		GO_REF:0000104 UniProt
RGD		 PMID:5123889 PMID:5010295 GO_REF:0000104, RGD:5490208, RGD:5490216 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625 		JBrowse link
G Ak4 adenylate kinase 4 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:44,724,494...44,941,135
Ensembl chr20:44,724,496...44,941,136 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in IDA
IEA
ISO 		GO_REF:0000107
(PMID:31201273) 		Ensembl
RGD		 PMID:31201273 PMID:4307347 GO_REF:0000107, RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:48,802,150...48,813,652
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO
IBA 		GO_REF:0000002
(PMID:8845311)
GO_REF:0000033
(PMID:12614151) 		InterPro
RGD
GO_Central		 PMID:8845311 PMID:12614151 PMID:220041 GO_REF:0000002 GO_REF:0000033, RGD:5133687 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:48,802,150...48,813,652
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO
ISS 		(PMID:24767988)
GO_REF:0000024 		RGD
UniProt		 PMID:24767988 GO_REF:0000024 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:44,724,494...44,941,135
Ensembl chr20:44,724,496...44,941,136 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA 		(PMID:25678555)
GO_REF:0000107 		RGD
Ensembl		 PMID:25678555 GO_REF:0000107 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:11912132) 		GO_Central
Ensembl
RGD		 PMID:11912132 PMID:3010881 GO_REF:0000033 GO_REF:0000107, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in ISO (PMID:30449682), (PMID:6249586) RGD PMID:6249586 PMID:30449682 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341), (PMID:6154574) RGD PMID:2419341 PMID:6154574 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        biosynthetic process 8630
          nucleobase-containing compound biosynthetic process 4809
            nucleoside phosphate biosynthetic process 312
              nucleoside diphosphate biosynthetic process 15
                deoxyribonucleoside diphosphate biosynthetic process + 4
                purine nucleoside diphosphate biosynthetic process + 7
                pyrimidine nucleoside diphosphate biosynthetic process + 7
                ribonucleoside diphosphate biosynthetic process + 12
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing small molecule metabolic process 730
              nucleoside phosphate metabolic process 699
                nucleoside phosphate biosynthetic process 312
                  nucleoside diphosphate biosynthetic process 15
                    deoxyribonucleoside diphosphate biosynthetic process + 4
                    purine nucleoside diphosphate biosynthetic process + 7
                    pyrimidine nucleoside diphosphate biosynthetic process + 7
                    ribonucleoside diphosphate biosynthetic process + 12
paths to the root