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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside diphosphate metabolic process
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Accession:GO:0009132 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate metabolism


show annotations for term's descendants           Sort by:
nucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:42,125,679...42,151,198
Ensembl chr19:42,125,711...42,151,081 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in IDA
IEA		 GO_REF:0000104 UniProt
RGD		 PMID:19049516 GO_REF:0000104, RGD:5134369 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041 		JBrowse link
G Ak2 adenylate kinase 2 involved_in IDA
IEA		 GO_REF:0000104 UniProt
RGD		 PMID:5123889 GO_REF:0000104, RGD:5490208 NCBI chr 5:141,308,650...141,364,633
Ensembl chr 5:141,346,063...141,364,632 		JBrowse link
G Ak2l1 adenylate kinase 2 like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:44,966,606...44,967,403
Ensembl chr 4:44,966,627...44,967,325 		JBrowse link
G Ak3 adenylate kinase 3 involved_in IDA
IEA		 GO_REF:0000104 UniProt
RGD		 PMID:5123889 PMID:5010295 GO_REF:0000104, RGD:5490208, RGD:5490216 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625 		JBrowse link
G Ak4 adenylate kinase 4 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618 		JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) RGD PMID:28746349 MGI:5917829 NCBI chr 1:164,884,823...164,929,899
Ensembl chr 1:164,885,320...164,929,887 		JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO MGI:2182811 (MGI:3760051|PMID:17502665) RGD PMID:17502665 MGI:3760051 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Nt5e 5' nucleotidase, ecto involved_in IEA
ISO		 GO_REF:0000107
MGI:3522017 (MGI:5917829|PMID:28746349), (MGI:6478084|PMID:20430891)		 Ensembl
RGD		 PMID:20430891 PMID:28746349 GO_REF:0000107 MGI:5917829 MGI:6478084 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881 		JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142 		JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 acts_upstream_of_or_within
involved_in		 ISO MGI:4364610 (MGI:5476853|PMID:23439682)
(MGI:5529149|PMID:23078545)		 RGD PMID:23078545 PMID:23439682 MGI:5476853 MGI:5529149 NCBI chr 1:164,884,823...164,929,899
Ensembl chr 1:164,885,320...164,929,887 		JBrowse link
G Bad BCL2-associated agonist of cell death involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:3778846|PMID:18223655)		 UniProt
Ensembl
RGD		 PMID:18223655 GO_REF:0000024 GO_REF:0000107 MGI:3778846 NCBI chr 1:204,133,502...204,142,829
Ensembl chr 1:204,131,501...204,142,823 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:3010881 PMID:21873635 RGD:5133253, RGD:13792537 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 (PMID:22556419)
GO_REF:0000024		 RGD
UniProt		 PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in IDA
ISO		 (PMID:31201273) RGD PMID:31201273 PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 (PMID:22556419)
GO_REF:0000024		 RGD
UniProt		 PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:192455 PMID:21873635 RGD:5133256, RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within		 IDA
IBA
ISO		 PMID:21873635
(PMID:12614151)
(MGI:77260|PMID:8845311)		 RGD PMID:8845311 PMID:12614151 PMID:220041 PMID:21873635 MGI:77260, RGD:5133687, RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:3010881 RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:192455 PMID:21873635 RGD:5133256, RGD:13792537 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) RGD PMID:10858452 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 (PMID:22556419)
GO_REF:0000024		 RGD
UniProt		 PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963 		JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlgap2 DLG associated protein 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:74,786,771...75,496,402
Ensembl chr16:74,791,509...75,496,407 		JBrowse link
G Guk1 guanylate kinase 1 acts_upstream_of_or_within ISO (MGI:81565|PMID:8663313) RGD PMID:8663313 MGI:81565 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
G Lrguk leucine-rich repeats and guanylate kinase domain containing involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:62,647,222...62,770,268
Ensembl chr 4:62,647,264...62,770,319 		JBrowse link
nucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3043620|PMID:15122917)		 Ensembl
RGD		 PMID:15122917 GO_REF:0000107 MGI:3043620 NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296 		JBrowse link
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866 		JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:3043501|PMID:15130768)
PMID:21873635		 RGD PMID:15130768 PMID:21873635 MGI:3043501, RGD:13792537 NCBI chr 8:120,246,412...120,277,943
Ensembl chr 8:120,247,121...120,277,943 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
G Entpd6 ectonucleoside triphosphate diphosphohydrolase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,575,659...139,598,163
Ensembl chr 3:139,575,686...139,598,154 		JBrowse link
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:2178511 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:2178511|PMID:11929769)		 Ensembl
RGD		 PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO
ISS		 (PMID:24767988)
GO_REF:0000024		 RGD
UniProt		 PMID:24767988 GO_REF:0000024 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618 		JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18462755), (PMID:19699693), (PMID:21389046)		 UniProt
RGD		 PMID:18462755 PMID:19699693 PMID:21389046 GO_REF:0000024 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001 		JBrowse link
ribonucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in ISO (PMID:16376858)
(MGI:6810812|PMID:12578384)		 RGD PMID:12578384 PMID:16376858 MGI:6810812 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISO
IEA		 (PMID:16376858)
GO_REF:0000107
(MGI:6810812|PMID:12578384)		 RGD
Ensembl		 PMID:12578384 PMID:16376858 GO_REF:0000107 MGI:6810812 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773 		JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in ISO (PMID:16376858) RGD PMID:16376858 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) RGD PMID:25678555 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO		 PMID:21873635
GO_REF:0000107
(PMID:11912132)		 Ensembl
RGD		 PMID:11912132 PMID:3010881 PMID:21873635 GO_REF:0000107, RGD:5133253, RGD:13792537 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO
IEA		 (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586)
GO_REF:0000107		 RGD
Ensembl		 PMID:6249586 PMID:30449682 GO_REF:0000107 MGI:6282496 MGI:6720231 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (MGI:1289111|PMID:2419341), (MGI:6720230|PMID:6154574) RGD PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA		 (PMID:10858452), (PMID:9556635)
PMID:21873635		 RGD PMID:9556635 PMID:10858452 PMID:21873635 RGD:13792537 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248)		 UniProt
RGD		 PMID:10369669 PMID:21074248 GO_REF:0000024 MGI:1927266 MGI:4881347 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19574
    metabolic process 11556
      organic substance metabolic process 10908
        organophosphate metabolic process 904
          nucleoside phosphate metabolic process 491
            nucleoside diphosphate metabolic process 31
              deoxyribonucleoside diphosphate metabolic process + 5
              nucleoside diphosphate biosynthetic process + 13
              nucleoside diphosphate catabolic process + 12
              purine nucleoside diphosphate metabolic process + 16
              pyrimidine nucleoside diphosphate metabolic process + 8
              ribonucleoside diphosphate metabolic process + 25
Path 2
Term Annotations click to browse term
  biological_process 19574
    metabolic process 11556
      nitrogen compound metabolic process 9337
        cellular nitrogen compound metabolic process 6502
          nucleobase-containing compound metabolic process 5468
            nucleobase-containing small molecule metabolic process 564
              nucleoside phosphate metabolic process 491
                nucleoside diphosphate metabolic process 31
                  deoxyribonucleoside diphosphate metabolic process + 5
                  nucleoside diphosphate biosynthetic process + 13
                  nucleoside diphosphate catabolic process + 12
                  purine nucleoside diphosphate metabolic process + 16
                  pyrimidine nucleoside diphosphate metabolic process + 8
                  ribonucleoside diphosphate metabolic process + 25
paths to the root