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U2 snRNP - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:U2 snRNP
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Accession:GO:0005686 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U2, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U2 snRNP, most of which remain associated with the U2 snRNA both while the U2 snRNP is free or assembled into a series of spliceosomal complexes.
Comment:U2 snRNP refers to the U2 small nuclear RNA and the proteins that associate with it. U2 snRNP is not considered to be a type of spliceosomal complex by itself.
Synonyms:narrow_synonym: 17S U2 snRNP

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U2 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G ENSRNOG00000063333 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:93,293,758...93,294,114 JBrowse link
G ENSRNOG00000063412 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:133,163,165...133,163,784 JBrowse link
G ENSRNOG00000064062 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G ENSRNOG00000068896 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:58,714,468...58,715,548 JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607 		JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087 		JBrowse link
G Phf5a PHD finger protein 5A part_of ISS
ISO
IBA
IEA 		GO_REF:0000024
(PMID:12234937)
GO_REF:0000033
GO_REF:0000107 		UniProt
RGD
GO_Central
Ensembl		 PMID:12234937 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460 		JBrowse link
G Rbmx2 RNA binding motif protein, X-linked 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,888,514...127,896,239
Ensembl chr  X:127,888,438...127,896,869 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 part_of ISO
IBA
IEA 		(PMID:10882114), (PMID:11533230), (PMID:23793891)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:10882114 PMID:11533230 PMID:23793891 GO_REF:0000033 GO_REF:0000107 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 part_of ISO
ISS
IBA
IEA 		(PMID:11533230)
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107 		RGD
UniProt
GO_Central
Ensembl		 PMID:11533230 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 part_of ISO
IEA 		(PMID:11533230)
GO_REF:0000107 		RGD
Ensembl		 PMID:11533230 GO_REF:0000107 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO
IBA
IEA 		(PMID:11252167)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:11252167 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245 		JBrowse link
G Sf3b4 splicing factor 3B subunit 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,732,791...183,737,545
Ensembl chr 2:183,732,754...183,737,959 		JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:7,357,040...7,357,752
Ensembl chr 1:7,350,731...7,357,839 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000107 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:8371979 GO_REF:0000033, RGD:1601359 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of ISO (PMID:2951739) RGD PMID:2951739 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
Ensembl chr20:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
Ensembl chr  X:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:8371979 GO_REF:0000033, RGD:1601359 NCBI chr 1:111,101,327...111,123,400
Ensembl chr 1:111,101,329...111,123,634 		JBrowse link
G Snrpn-ps4 small nuclear ribonucleoprotein polypeptide N, pseudogene 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:93,649,679...93,650,898
Ensembl chr 5:93,650,062...93,650,771 		JBrowse link
G Snrpnl2 small nuclear ribonucleoprotein polypeptide N like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:73,193,647...73,194,285
Ensembl chr15:73,193,647...73,195,245 		JBrowse link
G U2surp U2 snRNP-associated SURP domain containing part_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:96,018,932...96,075,795
Ensembl chr 8:96,022,957...96,075,691 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21350
    protein-containing complex 6834
      nuclear protein-containing complex 1347
        small nuclear ribonucleoprotein complex 90
          spliceosomal snRNP complex 82
            U2 snRNP 31
Path 2
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      intracellular anatomical structure 15532
        intracellular organelle 13785
          intracellular membrane-bounded organelle 12185
            nucleus 7685
              nuclear protein-containing complex 1347
                small nuclear ribonucleoprotein complex 90
                  spliceosomal snRNP complex 82
                    U2 snRNP 31
paths to the root