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ONTOLOGY REPORT - ANNOTATIONS

Term:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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Accession:GO:0000466 term browser browse the term
Definition:Any process involved in the maturation of an rRNA molecule originally produced as part of a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript.

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maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA UniProt GO_REF:0000104 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:57,462,623...57,469,972
Ensembl chr16:57,462,798...57,469,604 		JBrowse link
G PES1 pescadillo ribosomal biogenesis factor 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:13,453,184...13,469,115
Ensembl chr19:13,453,160...13,469,012 		JBrowse link
G URB1 URB1 ribosome biogenesis homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:59,733,260...59,811,990
Ensembl chr 2:59,733,902...59,814,018 		JBrowse link
G WDR12 WD repeat domain 12 involved_in IEA UniProt
Ensembl
TreeGrafter		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr10:88,616,540...88,649,743
Ensembl chr10:88,616,797...88,649,418 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G NOL9 nucleolar protein 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:125,188,185...125,215,984
Ensembl chr20:125,188,275...125,215,685 		JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:9742256 RGD:11535027 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G FCF1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr24:51,928,076...51,947,993 JBrowse link
G KRI1 KRI1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:9,564,977...9,579,267
Ensembl chr 6:9,562,857...9,574,360 		JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:67,172,759...67,181,669
Ensembl chr17:67,173,130...67,181,975 		JBrowse link
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,841,865...1,843,332
Ensembl chr 2:1,841,865...1,843,087 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:62,297,483...62,299,194
Ensembl chr 8:62,297,608...62,298,705 		JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERI1 exoribonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:9,936,951...10,055,407
Ensembl chr 8:10,023,909...10,055,405 		JBrowse link
G ERI3 ERI1 exoribonuclease family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:88,435,067...88,569,866
Ensembl chr20:88,435,047...88,570,458 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:120,672,590...120,694,887
Ensembl chr20:120,672,645...120,710,775 		JBrowse link
G EXOSC2 exosome component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:7,441,812...7,452,979
Ensembl chr12:7,442,791...7,452,964 		JBrowse link
G EXOSC3 exosome component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:42,798,609...42,819,431
Ensembl chr12:42,799,067...42,803,471 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:6,452,155...6,485,411
Ensembl chr22:6,452,195...6,485,276 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:15,520,122...15,529,101
Ensembl chr 3:15,519,804...15,529,014 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:69,077,227...69,092,867
Ensembl chr 7:69,077,164...69,092,810 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10515
      primary metabolic process 9206
        RNA processing 894
          rRNA processing 225
            maturation of 5.8S rRNA 38
              maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 23
                cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
                endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
                exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
Path 2
Term Annotations click to browse term
  biological_process 16925
    cellular process 15870
      cellular metabolic process 8755
        cellular biosynthetic process 7063
          macromolecule biosynthetic process 6536
            nucleic acid biosynthetic process 4069
              RNA biosynthetic process 3964
                RNA processing 894
                  rRNA processing 225
                    maturation of 5.8S rRNA 38
                      maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 23
                        cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                        endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
                        endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                        exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
                        exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
paths to the root