ERI1 (exoribonuclease 1) - Rat Genome Database

Name: ERI1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ERI1 (exoribonuclease 1) Chlorocebus sabaeus

Analyze

Symbol:

ERI1

Name:

exoribonuclease 1

RGD ID:

18596101

Description:

ENCODES a protein that exhibits histone pre-mRNA stem-loop binding (ortholog); ribosome binding (ortholog); rRNA binding (ortholog); INVOLVED IN histone mRNA catabolic process (ortholog); maturation of 5.8S rRNA (ortholog); rRNA 3'-end processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH amenorrhea (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN histone pre-mRNA 3'end processing complex (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

3'-5' exoribonuclease 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ERI1 (exoribonuclease 1)	NCBI	Ortholog
Mus musculus (house mouse):	Eri1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Eri1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Eri1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ERI1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ERI1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Eri1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ERI1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Eri1 (exoribonuclease 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	9,936,951 - 10,055,407 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	10,023,909 - 10,055,405 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,459,216 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

Hoxha-Aliu syndrome (ISO)

Neurodevelopmental Disorders (ISO)

Spondyloepimetaphyseal Dysplasia, Guo-Campeau Type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IEA)

histone mRNA catabolic process (ISO)

maturation of 5.8S rRNA (ISO)

regulatory ncRNA-mediated gene silencing (IEA)

rRNA 3'-end processing (ISO)

Cellular Component

cytoplasm (IEA)

histone pre-mRNA 3'end processing complex (ISO)

nucleolus (IEA)

nucleus (ISO)

Molecular Function

3'-5' exonuclease activity (IEA)

3'-5'-RNA exonuclease activity (IEA)

exonuclease activity (IEA)

histone pre-mRNA stem-loop binding (ISO)

nucleic acid binding (IEA)

protein binding (ISO)

ribosome binding (ISO)

rRNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ERI1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	9,936,951 - 10,055,407 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	10,023,909 - 10,055,405 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,459,216 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ERI1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	9,002,897 - 9,100,104 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	9,002,147 - 9,116,746 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	8,860,407 - 8,957,614 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	8,897,860 - 8,925,899 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	7,988,552 - 8,019,088 (+)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	7,785,390 - 7,815,914 (+)	NCBI		HuRef
CHM1_1	8	8,925,749 - 8,956,251 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	10,644,016 - 10,741,931 (-)	NCBI		T2T-CHM13v2.0

Eri1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	35,932,419 - 35,962,687 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	35,932,407 - 35,963,350 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	35,465,265 - 35,495,533 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	35,465,253 - 35,496,196 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	36,528,319 - 36,558,587 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	36,933,770 - 36,963,998 (-)	NCBI		MGSCv36	mm8
Celera	8	38,105,540 - 38,129,667 (-)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	21.16	NCBI

Eri1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	63,427,412 - 63,447,521 (+)	NCBI		GRCr8
mRatBN7.2	16	56,724,101 - 56,744,228 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	56,724,115 - 56,744,226 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	62,035,775 - 62,055,838 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	65,449,758 - 65,469,821 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	60,669,734 - 60,689,797 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	60,307,148 - 60,327,237 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	60,307,148 - 60,327,236 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	59,982,385 - 60,002,474 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	60,422,764 - 60,442,317 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	60,422,838 - 60,442,391 (+)	NCBI
Celera	16	54,774,309 - 54,794,398 (+)	NCBI		Celera
Cytogenetic Map	16	q12.2	NCBI

Eri1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	5,075,105 - 5,102,892 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955463	5,074,921 - 5,104,341 (+)	NCBI	ChiLan1.0	ChiLan1.0

ERI1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	25,348,156 - 25,490,392 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	1,444,510 - 1,524,637 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	10,175,556 - 10,249,904 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ERI1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	35,441,304 - 35,499,501 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	35,473,913 - 35,499,487 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	35,905,778 - 35,963,974 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	37,473,637 - 37,531,847 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	37,504,230 - 37,531,795 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	35,579,052 - 35,637,366 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	36,142,393 - 36,200,661 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	36,261,126 - 36,319,266 (-)	NCBI		UU_Cfam_GSD_1.0

Eri1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	43,667,231 - 43,695,456 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936573	1,448,325 - 1,474,753 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERI1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	56,093,581 - 56,123,510 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	56,091,790 - 56,123,520 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Eri1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624839	5,090,369 - 5,118,775 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624839	5,090,187 - 5,119,985 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	36	20	60
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007961679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037983795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000014961 ⟹ ENSCSAP00000012917

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	8	10,023,909 - 10,055,405 (-)	Ensembl

RefSeq Acc Id:

XM_007961679 ⟹ XP_007959870

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	10,026,850 - 10,055,402 (-)	NCBI
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,369,401 (+)	NCBI

Sequence:

show sequence

GAGTTTGTGTGGCCGCCGCCGCGGGAACGCGAGCCCGGTAATTTTTCAACGGAGAAAGGCGAGG
CTTTCGGGCTCGGCCAAGTGAGAGTGAGCAAGTGTCTGGCTCCAGCAGCTCTCCTCTGGCGTAA
CAGCCGGCATGGAGGAACCACAGAGTAAAGAGCCTGCCAGCGAGGCCGTGACTCCCGTGTTGCT
GGAGTCGCCGCGGCCGGAGGGCCGGGAGGAGCAGCCGCGTCCCAGTCCCGAGGAAACTCAACAG
TATAGATTTGATGGCCAGGAGACAAAAGGATCCAAGTTCATTACCTCCAGTGTGAGTGACTTTA
GTGACCCAGTTTACAAAGAGATTGCTATTACCAATGGCTGTATTAATAGAATGAGTAAGGAAGA
ACTCAGAGCTAAGCTTTCAGAATTCAAGCTTGAAACCAGAGGAGTAAAGGATGTTCTAAAGAAG
AGACTGAAAAATTATTATAAGAAGCAGAAGCTGATGTTAAAAGAGAGCAATTGTGCTGACAGTT
ACTATGACTACATTTGTATTATTGACTTTGAAGCCACTTGTGAAGAAGGAAACCCACCTGAATT
TGTACATGAAATAATTGAATTTCCGGTTGTTTTACTGAATACGCATACTTTAGAAATAGAAGAC
ACATTTCAGCAGTATGTAAGACCAGAGATTAACACGCAGCTGTCTGATTTCTGCATCAGTCTTA
CTGGAATTACTCAGGATCAGGTAGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAAGTAAT
TGACTGGATGAAATTGAAGGAATTAGGAACAAAGTATAAATATTCAATTTTAACAGATGGTTCT
TGGGATATGAGTAAATTCTTGAACATTCAGTGCCAACTCAGCAGGCTCAAATACCCTCCTTTTG
CTAAAAAGTGGATCAATATTCGGAAGTCATATGGAAACTTTTACAAGGTTCCTAGAAGCCAAAC
CAAACTGACAATAATGCTTGAAAAATTAGGAATGGATTATGATGGGCGGCCTCACTGTGGTCTT
GATGACTCTAAGAATATCGCCCGAATAGCAGTTCGAATGCTTCAGGATGGGTGTGAACTCCGAA
TCAACGAGAAAATACATGCAGGACAGCTAATGAGTGTGTCCTCTTCCTTACCAATAGAGGGCAC
TCCACCGCCACAAATGCCACATTTTAGAAAGTAACAGCAGTTTTGTGTGTGGATCATTCCAATT
GAAGTTGCTATGAAGAGGTAGCAGATGAATCTCATTGAATTAGTCCTATAGTGCAAACTTTAAG
CACCTTAAAACATTTAAGATCTTATTACAGGTGATAGAGATAGGTAGATGTATGTGAACAGATT
TTGCAGGAAGGCGTACTGAATTCTTTGTCACCAGCACTTTTGATATGAGCAGTGTTTGTTACAC
AGTGACAGTTCCTGCTTAGAACTGACTTTTATAATTTAAGGTGTTCACTATATTTTCTTTGGTT
TTAAAATGGAAAATCCCATTGGCTGTTCTCTTGAATGTCATATCATACTGGTGTTAAAATATGT
AATGTATTTCTTTATTAACATCACTAGATGAAACCATATCTTAAAATGCAGAAGTGATTGGAAG
GTAGGTCTTATCTAGCCTTTGGATTTCAAGAATATCATAGTCCTTTTGGTTTTTCAGAGTTTAT
ATATGAAGTTCACCATGTATGTGATGAATTTCATAAGGTACTTGGTATACATGTTTGCCTATGT
TTCTTTTCAACTCATAATTGGAAGAATTGTGATCAATTATAGGATCTGGTTAAAAATTCAGTTA
CTGAAGGAATTAATGAGAACTTGGAAGAAAATACTGAAAGGACTATCATAAGGGCTGTAGCTCA
AACTTCATAATACATAAATCACTGGCGTCTTTTTGGATTTGGTTGTTTGATTCTCCTTCCTTTT
TTGACATATATATGCCTTAATTCTTAAATCTGAGGGACCATGCTTTGAAATAGACTGAAAATTA
AGGGTCACCACCTAATTTTACTTTGTATTCAGTATCATAAGTGAGGTTAATAAAGTCAATACTT
TCTACCACATATTATGTTTTTGTTATTAAAAAACTTCATTGGCCACCAGTGAAGTTAGTCAATA
AAATGCTTGTTTTTCTGATTTTACGTA

hide sequence

RefSeq Acc Id:

XM_007961680 ⟹ XP_007959871

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	9,936,951 - 10,055,407 (-)	NCBI
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,459,216 (+)	NCBI

Sequence:

show sequence

CGCCGGAGTTTGTGTGGCCGCCGCCGCGGGAACGCGAGCCCGGTAATTTTTCAACGGAGAAAGG
CGAGGCTTTCGGGCTCGGCCAAGTGAGAGTGAGCAAGTGTCTGGCTCCAGCAGCTCTCCTCTGG
CGTAACAGCCGGCATGGAGGAACCACAGAGTAAAGAGCCTGCCAGCGAGGCCGTGACTCCCGTG
TTGCTGGAGTCGCCGCGGCCGGAGGGCCGGGAGGAGCAGCCGCGTCCCAGTCCCGAGGAAACTC
AACAGTATAGATTTGATGGCCAGGAGACAAAAGGATCCAAGTTCATTACCTCCAGTGTGAGTGA
CTTTAGTGACCCAGTTTACAAAGAGATTGCTATTACCAATGGCTGTATTAATAGAATGAGTAAG
GAAGAACTCAGAGCTAAGCTTTCAGAATTCAAGCTTGAAACCAGAGGAGTAAAGGATGTTCTAA
AGAAGAGACTGAAAAATTATTATAAGAAGCAGAAGCTGATGTTAAAAGAGAGCAATTGTGCTGA
CAGTTACTATGACTACATTTGTATTATTGACTTTGAAGCCACTTGTGAAGAAGGAAACCCACCT
GAATTTGTACATGAAATAATTGAATTTCCGGTTGTTTTACTGAATACGCATACTTTAGAAATAG
AAGACACATTTCAGCAGTATGTAAGACCAGAGATTAACACGCAGCTGTCTGATTTCTGCATCAG
TCTTACTGGAATTACTCAGGATCAGGTAGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAA
GTAATTGACTGGATGAAATTGAAGGAATTAGGAACAAAGTATAAATATTCAATTTTAACAGATG
GTTCTTGGGATATGAGTAAATTCTTGAACATTCAGTGCCAACTCAGCAGGCTCAAATACCCTCC
TTTTGCTAAAAAGTGGATCAATATTCGGAAGTCATATGGAAACTTTTACAAGGAAGAACAGCAA
ACAGCACTTACAGCTGCTGCTTTCCCAGCTAGGAGGATAAGCCAGGCTCAGGCTCTGGGGGTGG
AGAGATGGTCTGTTGACCTCAGCTTTACTTCCAGACCACAGGAGTCCCACATTTGTCCAAGACC
TCTTTCTTTTGTCCCATGGAAGGAGGGCTGCAATGACTGGACAGTTCCACTCTCAGCAACCACT
TCTGATCTTTGAAATTCTGATCTCCTTTTAACAAAGTACGGTGAGAAGTAATTTACACTAAGTG
ACTTGACACCTGTATTTCCTGTTACTTTACTTTTCTTTCCATAATTATTTTAATTCCTGAAAAG
TGGAAAAGTACTTTCTCCATCATGTCTCATTTTTCCCTTTTACCTTAAAAGCAAAACTCTGCAT
TTATTATAAACTATCTTAAATCTACTTTGGAAGTGATTTGAAAATAAACTGTAAAATAACA

hide sequence

RefSeq Acc Id:

XM_007961682 ⟹ XP_007959873

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	9,982,150 - 10,055,405 (-)	NCBI
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,413,910 (+)	NCBI

Sequence:

show sequence

CCGGAGTTTGTGTGGCCGCCGCCGCGGGAACGCGAGCCCGGTAATTTTTCAACGGAGAAAGGCG
AGGCTTTCGGGCTCGGCCAAGTGAGAGTGAGCAAGTGTCTGGCTCCAGCAGCTCTCCTCTGGCG
TAACAGCCGGCATGGAGGAACCACAGAGTAAAGAGCCTGCCAGCGAGGCCGTGACTCCCGTGTT
GCTGGAGTCGCCGCGGCCGGAGGGCCGGGAGGAGCAGCCGCGTCCCAGTCCCGAGGAAACTCAA
CAGTATAGATTTGATGGCCAGGAGACAAAAGGATCCAAGTTCATTACCTCCAGTGTGAGTGACT
TTAGTGACCCAGTTTACAAAGAGATTGCTATTACCAATGGCTGTATTAATAGAATGAGTAAGGA
AGAACTCAGAGCTAAGCTTTCAGAATTCAAGCTTGAAACCAGAGGAGTAAAGGATGTTCTAAAG
AAGAGACTGAAAAATTATTATAAGAAGCAGAAGCTGATGTTAAAAGAGAGCAATTGTGCTGACA
GTTACTATGACTACATTTGTATTATTGACTTTGAAGCCACTTGTGAAGAAGGAAACCCACCTGA
ATTTGTACATGAAATAATTGAATTTCCGGTTGTTTTACTGAATACGCATACTTTAGAAATAGAA
GACACATTTCAGCAGTATGTAAGACCAGAGATTAACACGCAGCTGTCTGATTTCTGCATCAGTC
TTACTGGAATTACTCAGGATCAGGTAGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAAGT
AATTGACTGGATGAAATTGAAGGAATTAGGAACAAAGTATAAATATTCAATTTTAACAGATGGT
TCTTGGGATATGAGTAAATTCTTGAACATTCAGTGCCAACTCAGCAGGCTCAAATACCCTCCTT
TTGCTAAAAAGTGGATCAATATTCGGAAGTCATATGGAAACTTTTACAAGCCTGGCAGTAAGAG
CCAGTTAGCAGAGAGAGACACGAACAGCACATATGCAAGGCTGCCGAGAAGCGATGAGGCAGAG
AGGCCCCGACACCTCTCCAGTTCCTGAGGCCACACTGCACACCTTTGTGAAGTGCAGCACCCCT
ACCCTGATCTTCCAGCAGGTTTTCACCAGGTTCATGTTCACCTGTTCCACCTTGCTGTTGCCTT
ATTCACTGTTGTCTCTTGTTTTCTAGATGTGTCTTTGGGTTCTAGCAGCTCAGAGCTCTGAGTG
TGGAATCATCATCAGTGTAGACCTTGGCCACTTCTTCATTTCCCCCTCCCCCAAGGCACCACTC
ACTTGGCTTCTGCAGGAACAAGCATTTAGTGCAGATATCAGCTAAATGGGGGGCAGGGGGCACC
AGTGCAGGCAGCACAGCCCAGAATTGGCTACTACTTAAGGTTTAATGCTATACTGAAATGTTCA
CTGATAAAATGTGCTACCTGGATTTATTAGTCCAGTCTCAC

hide sequence

RefSeq Acc Id:

XM_007961683 ⟹ XP_007959874

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	10,024,085 - 10,055,404 (-)	NCBI
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,372,256 (+)	NCBI

Sequence:

show sequence

CGGAGTTTGTGTGGCCGCCGCCGCGGGAACGCGAGCCCGGTAATTTTTCAACGGAGAAAGGCGA
GGCTTTCGGGCTCGGCCAAGTGAGAGTGAGCAAGTGTCTGGCTCCAGCAGCTCTCCTCTGGCGT
AACAGCCGGCATGGAGGAACCACAGAGTAAAGAGCCTGCCAGCGAGGCCGTGACTCCCGTGTTG
CTGGAGTCGCCGCGGCCGGAGGGCCGGGAGGAGCAGCCGCGTCCCAGTCCCGAGGAAACTCAAC
AGTATAGATTTGATGGCCAGGAGACAAAAGGATCCAAGTTCATTACCTCCAGTGTGAGTGACTT
TAGTGACCCAGTTTACAAAGAGATTGCTATTACCAATGGCTGTATTAATAGAATGAGTAAGGAA
GAACTCAGAGCTAAGCTTTCAGAATTCAAGCTTGAAACCAGAGGAGTAAAGGATGTTCTAAAGA
AGAGACTGAAAAATTATTATAAGAAGCAGAAGCTGATGTTAAAAGAGAGCAATTGTGCTGACAG
TTACTATGACTACATTTGTATTATTGACTTTGAAGCCACTTGTGAAGAAGGAAACCCACCTGAA
TTTGTACATGAAATAATTGAATTTCCGGTTGTTTTACTGAATACGCATACTTTAGAAATAGAAG
ACACATTTCAGCAGTATGTAAGACCAGAGATTAACACGCAGCTGTCTGATTTCTGCATCAGTCT
TACTGGAATTACTCAGGATCAGGTAGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAAGTA
ATTGACTGGATGAAATTGAAGGAATTAGGAACAAAGTATAAATATTCAATTTTAACAGATGGTT
CTTGGGATATGAGTAAATTCTTGAACATTCAGTGCCAACTCAGCAGGCTCAAATACCCTCCTTT
TGCTAAAAAGTGGATCAATATTCGGAAGTCATATGGAAACTTTTACAAGGGAGAAGTTTCTGCC
TGGATTGAAACAAAAAAACACAGGAGTCACAAGCATGTTACCTATTAAAAGAGAGAGGGTATCT
CTGAAGACTAATTAAAATGGTAATTTTTTAAAAGATGGGACCAGTTGACTTTTAGTATATCACC
CCAAGTATTATCCCCAAAATGATAATACAAAACAATTTGGAGACCAGGAGAAAAACTGGTAGTA
GGATTATGGGGGAGGGGAAGAAGCACAGGTGGTCAGGATAATAATGCGTGTTTGGCCTCAGCTG
TAGGTAGAGGTGCCAGAGAAACTACCTGCCTCACAGATGAGCACACACGGGTGCACTGTAAAAG
TCTGGGAAGGATGTATTGTACTTTGAAGGAAGACTTTCCATTTCTAAGCTACCATGGAGAAGTA
TAAGCTCCTTGAGACCAGAGACTGTGACTTCTGCATCTTTGATTCCAACGACATATGATAAAAT
GTTTTGCACGTAGTTGAATCCAGCGTTGATAAATAAAGGACAGCCTTACATCCTTTTTCTGTTA
TACTTAGCATTTCCTCTTTCTTCTGCACCACCAACCTGTATTTCAAGCCTCCCTGCCCCACAGA
GCTTCCAAAGCCAATAAATTTGTTAATCTAAAGCAGGGGTCAGCAAACTGCCACCCCTGGGCCA
AATCTGGCCTGCTGCCTGTTTTTGTATGGCCTACAAACTATGGTTTTT

hide sequence

RefSeq Acc Id:

XM_007961684 ⟹ XP_007959875

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	10,024,004 - 10,055,404 (-)	NCBI
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,372,256 (+)	NCBI

Sequence:

show sequence

CGGAGTTTGTGTGGCCGCCGCCGCGGGAACGCGAGCCCGGTAATTTTTCAACGGAGAAAGGCGA
GGCTTTCGGGCTCGGCCAAGTGAGAGTGAGCAAGTGTCTGGCTCCAGCAGCTCTCCTCTGGCGT
AACAGCCGGCATGGAGGAACCACAGAGTAAAGAGCCTGCCAGCGAGGCCGTGACTCCCGTGTTG
CTGGAGTCGCCGCGGCCGGAGGGCCGGGAGGAGCAGCCGCGTCCCAGTCCCGAGGAAACTCAAC
AGTATAGATTTGATGGCCAGGAGACAAAAGGATCCAAGTTCATTACCTCCAGTGTGAGTGACTT
TAGTGACCCAGTTTACAAAGAGATTGCTATTACCAATGGCTGTATTAATAGAATGAGTAAGGAA
GAACTCAGAGCTAAGCTTTCAGAATTCAAGCTTGAAACCAGAGGAGTAAAGGATGTTCTAAAGA
AGAGACTGAAAAATTATTATAAGAAGCAGAAGCTGATGTTAAAAGAGAGCAATTGTGCTGACAG
TTACTATGACTACATTTGTATTATTGACTTTGAAGCCACTTGTGAAGAAGGAAACCCACCTGAA
TTTGTACATGAAATAATTGAATTTCCGGTTGTTTTACTGAATACGCATACTTTAGAAATAGAAG
ACACATTTCAGCAGTATGTAAGACCAGAGATTAACACGCAGCTGTCTGATTTCTGCATCAGTCT
TACTGGAATTACTCAGGATCAGGTAGACAGAGCTGATACCTTCCCTCAGGTACTAAAAAAAGTA
ATTGACTGGATGAAATTGAAGGAATTAGGAACAAAGTATAAATATTCAATTTTAACAGATGGTT
CTTGGGATATGAGTAAATTCTTGAACATTCAGTGCCAACTCAGCAGGCTCAAATACCCTCCTTT
TGCTAAAAAGTGGATCAATATTCGGAAGTCATATGGAAACTTTTACAAGGGAGAAGTTTCTGCC
TGGATTGAAACAAAAAAACACAGGAGTCACAAGCATGTTACCTATTAAAAGAGAGAGGGTATCT
CTGAAGACTAATTAAAATGCTGTAGGTAGAGGTGCCAGAGAAACTACCTGCCTCACAGATGAGC
ACACACGGGTGCACTGTAAAAGTCTGGGAAGGATGTATTGTACTTTGAAGGAAGACTTTCCATT
TCTAAGCTACCATGGAGAAGTATAAGCTCCTTGAGACCAGAGACTGTGACTTCTGCATCTTTGA
TTCCAACGACATATGATAAAATGTTTTGCACGTAGTTGAATCCAGCGTTGATAAATAAAGGACA
GCCTTACATCCTTTTTCTGTTATACTTAGCATTTCCTCTTTCTTCTGCACCACCAACCTGTATT
TCAAGCCTCCCTGCCCCACAGAGCTTCCAAAGCCAATAAATTTGTTAATCTAAAGCAGGGGTCA
GCAAACTGCCACCCCTGGGCCAAATCTGGCCTGCTGCCTGTTTTTGTATGGCCTACAAACTATG
GTTTTTATATTTGTTAATGGCTCAAAATATTATTTTGTATAATATGAAAATTACATGAAATTTT
AGTTTCTCTGAATAAAGTTTTGG

hide sequence

RefSeq Acc Id:

XM_037983795 ⟹ XP_037839723

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666052	32,340,126 - 32,421,260 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007959870	(Get FASTA)	NCBI Sequence Viewer
	XP_007959871	(Get FASTA)	NCBI Sequence Viewer
	XP_007959873	(Get FASTA)	NCBI Sequence Viewer
	XP_007959874	(Get FASTA)	NCBI Sequence Viewer
	XP_007959875	(Get FASTA)	NCBI Sequence Viewer
	XP_037839723	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000012917
	ENSCSAP00000012917.1

RefSeq Acc Id:	XP_007959871 ⟸ XM_007961680
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007959873 ⟸ XM_007961682
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_007959875 ⟸ XM_007961684
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_007959874 ⟸ XM_007961683
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_007959870 ⟸ XM_007961679
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RWC8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000012917 ⟸ ENSCSAT00000014961

RefSeq Acc Id:	XP_037839723 ⟸ XM_037983795
- Peptide Label:	isoform X5

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000016866	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000014961.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.30	UniProtKB/TrEMBL
	3.30.420.10	UniProtKB/TrEMBL
InterPro	ERI-1_3'hExo-like	UniProtKB/TrEMBL
	Exonuclease_RNaseT/DNA_pol3	UniProtKB/TrEMBL
	RNaseH-like_sf	UniProtKB/TrEMBL
	RNaseH_sf	UniProtKB/TrEMBL
	SAP_dom	UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/TrEMBL
KEGG Report	csab:103215357	UniProtKB/TrEMBL
NCBI Gene	ERI1	ENTREZGENE
PANTHER	3'-5' EXONUCLEASE ERI1-RELATED	UniProtKB/TrEMBL
	3'-5' EXORIBONUCLEASE 1	UniProtKB/TrEMBL
Pfam	RNase_T	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
PROSITE	SAP	UniProtKB/TrEMBL
SMART	EXOIII	UniProtKB/TrEMBL
	SAP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53098	UniProtKB/TrEMBL
	SSF68906	UniProtKB/TrEMBL
UniProt	A0A0D9RWC8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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