EXOSC3 (exosome component 3) - Rat Genome Database

Name: EXOSC3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: EXOSC3 (exosome component 3) Chlorocebus sabaeus

Analyze

Symbol:

EXOSC3

Name:

exosome component 3

RGD ID:

18414388

Description:

ENCODES a protein that exhibits RNA exonuclease activity (ortholog); INVOLVED IN DNA deamination (ortholog); isotype switching (ortholog); positive regulation of isotype switching (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN cytosol (ortholog); euchromatin (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

exosome complex component RRP40

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EXOSC3 (exosome component 3)	NCBI	Ortholog
Mus musculus (house mouse):	Exosc3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Exosc3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Exosc3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EXOSC3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EXOSC3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Exosc3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EXOSC3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Exosc3 (exosome component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	42,798,609 - 42,819,431 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	42,799,067 - 42,803,471 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	39,866,661 - 39,887,819 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

distal arthrogryposis type 1A (ISO)

fetal akinesia deformation sequence syndrome 1 (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

genetic disease (ISO)

Muscle Hypotonia (ISO)

Nervous System Malformations (ISO)

pontocerebellar hypoplasia (ISO)

pontocerebellar hypoplasia type 1 (ISO)

pontocerebellar hypoplasia type 1B (ISO)

primary ciliary dyskinesia (ISO)

stomach cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CUT catabolic process (IEA)

DNA deamination (ISO)

exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IEA)

isotype switching (ISO)

nuclear polyadenylation-dependent rRNA catabolic process (IEA)

obsolete exonucleolytic catabolism of deadenylated mRNA (IEA)

obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (IEA)

poly(A)-dependent snoRNA 3'-end processing (IEA)

positive regulation of isotype switching (ISO)

RNA catabolic process (ISO)

RNA processing (ISO)

rRNA processing (IEA)

TRAMP-dependent tRNA surveillance pathway (IEA)

U4 snRNA 3'-end processing (IEA)

Cellular Component

cytoplasm (IEA)

cytoplasmic exosome (RNase complex) (IEA)

cytosol (ISO)

euchromatin (ISO)

exosome (RNase complex) (IEA)

nuclear exosome (RNase complex) (IEA)

nucleolus (IEA)

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

RNA exonuclease activity (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

EXOSC3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	42,798,609 - 42,819,431 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	42,799,067 - 42,803,471 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	39,866,661 - 39,887,819 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

EXOSC3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	37,779,714 - 37,785,092 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	37,759,234 - 37,832,117 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	37,779,711 - 37,785,089 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	37,770,308 - 37,775,067 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	37,770,307 - 37,775,065	NCBI
Celera	9	37,713,503 - 37,718,262 (-)	NCBI		Celera
Cytogenetic Map	9	p13.2	NCBI
HuRef	9	37,732,052 - 37,737,430 (-)	NCBI		HuRef
CHM1_1	9	37,781,396 - 37,786,774 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	37,803,445 - 37,808,823 (-)	NCBI		T2T-CHM13v2.0

Exosc3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	45,316,613 - 45,320,616 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	45,316,613 - 45,342,732 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	45,316,613 - 45,320,616 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	45,316,613 - 45,342,732 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	45,329,501 - 45,333,475 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	45,337,729 - 45,341,703 (-)	NCBI		MGSCv36	mm8
Celera	4	45,338,021 - 45,341,971 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	23.84	NCBI

Exosc3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	64,369,495 - 64,374,711 (-)	NCBI		GRCr8
mRatBN7.2	5	59,573,849 - 59,579,065 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	59,573,886 - 59,579,060 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	61,548,206 - 61,553,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	63,367,709 - 63,372,935 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	63,336,918 - 63,342,144 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	60,866,498 - 60,871,734 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	60,868,502 - 60,871,705 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	65,375,248 - 65,380,463 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	61,880,622 - 61,883,825 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	61,878,837 - 61,884,005 (-)	NCBI
Celera	5	58,144,199 - 58,147,390 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Exosc3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	28,683,896 - 28,693,395 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	28,683,896 - 28,692,006 (+)	NCBI	ChiLan1.0	ChiLan1.0

EXOSC3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	86,802,391 - 86,829,345 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	86,808,332 - 86,835,286 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	37,611,173 - 37,634,869 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	38,552,659 - 38,558,075 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	38,552,659 - 38,558,078 (-)	Ensembl	panpan1.1		panPan2

EXOSC3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	54,072,993 - 54,079,024 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	54,073,313 - 54,078,598 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	52,499,195 - 52,504,935 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	55,182,436 - 55,188,175 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	55,182,171 - 55,217,148 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	53,680,587 - 53,686,326 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	53,710,218 - 53,715,957 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	54,406,491 - 54,412,231 (-)	NCBI		UU_Cfam_GSD_1.0

Exosc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	169,033,275 - 169,038,601 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	5,581,090 - 5,586,128 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	5,580,855 - 5,586,170 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EXOSC3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	238,536,345 - 238,541,333 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	238,536,341 - 238,541,756 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	266,471,332 - 266,476,724 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Exosc3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624930	1,393,087 - 1,398,347 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624930	1,393,087 - 1,403,483 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	14	48
Low		6	12
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007968686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007968687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037998238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_491884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000008895 ⟹ ENSCSAP00000007030

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	12	42,799,067 - 42,803,471 (+)	Ensembl

RefSeq Acc Id:

XM_007968686 ⟹ XP_007966877

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	12	42,798,615 - 42,804,150 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	39,866,685 - 39,871,788 (+)	NCBI

Sequence:

show sequence

ACCTCAAATGATCCACCCGCCTCGGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCCACTGTG
CCCGGCCCCAGCGGCCAGTTTTCAAAGCCCCTCTGCTCAGCTTCCAGAGATCCCAGGAAACTCT
AAGCGGGAGCATCTCGTATCCCCACGATGCGACTGGTCACAAAACACGCGACCCGAGACACTGA
AAGTGGAGGCTTCTTGATGGATCAAGCTGCTTAGTTCTCATACCGACCCGCGGCCAGGCTGTAA
GACAGGTGGTCGGCTACAGACACAATCACAGCCACCTTGGACAAGGACCCGTGAGCTGACAGCC
ATTAAGCTTCATAAACTGGTCCAAATCCAACGGGCCGCTACTGCCGGAAACGGAAAGTCCTCAA
GGGCGGGTGTTGGAAGCAGAGCGGAAGCGGAAGGAGGGTACCGGAAACGGTGTTTGGTGGCGCC
CGCGATGGCAGAACCTGTGTCTGTTGCGGCTGACTATCTCGCGGGCAGCCGGGCGCGCGCTGCA
CGCACAGTACTAGGTCAGGTGGTGCTCCCGGGTGAGGAGCTGCTCCTGCCGGAACAGGAGGACG
CGGAAGGCCCTGGCGGTGCCGGGGAGCGACCGTTGAGCCTGAATGCTGGAGCGCGCTCGCGGGT
GCGCGTTGTATGCGGCCCGGGCTTGCGGCGCTGTGGGGACCGCCTGCTGGTCACCAAGTGCGGC
CGCCTCCGTCACAAGGAGCCCGGCAGTGGCAGCGGCGGCGGTGTTTACTGGGTGGACTCTCAGC
AGAAGCGGTATGTTCCAGTGAAAGGAGACCATGTGATTGGCATAGTGACAGCTAAATCTGGAGA
TATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTGTCTTACTTGTCATTTGAAGGT
GCAACTAAAAGAAACAGACCAAATGTGCAGGTTGGAGATCTCATCTATGGCCAATTTGTGGTTG
CTAATAAAGACATGGAACCAGAGATGGTCTGTATTGACAGCTGTGGACGAGCCAATGGAATGGG
TGTCATTGGACAGGATGGTCTGCTTTTTAAAGTGACTCTGGGCTTAATTAGAAAGCTATTAGCT
CCAGACTGTGAAATCATACAGGAAGTGGGAAAACTCTATCCACTGGAGATAGTATTTGGAATGA
ATGGAAGAATATGGGTTAAGGCAAAAACCATCCAGCAGACTTTAATTTTGGCAAACATTTTAGA
AGCTTGTGAACACATGACGTCAGATCAAAGAAAACAGATCTTCTCCAGATTGGCAGAAAGTTGA
TATAGGTGGACTTTTTTACAGGTCAGTTGATGCAAAAACTATGGGTTTCCTGGGGAATACTTTT
TTCAGGTGAACCTCTCCCCATTTAAATACTCAGAAGATAAGGTGTGAATGTATATTATCAGAGT
CCTAAAGTATTTTTATAAGTAAGTTACTGGTTTTCACCCACGCTTTAGAGAGAAAATCATTGCA
AAATCATATTTTCTGTTTCTGTACAATAAAGTTTACTAAACAGTATTATGGTTTATTTGGAGTT
AACTCCCTTAGTATTGCTACAGCTTCCATAATTAACTGGAAGTCAGCAGTAAAATAATTTTCTG
ATTATAATAGTAAGCCAGGTTCACCAGAGGAAATGCAGACTACATGAAAAGTATAAAGCAGCAA
AATGTCACCTGTAGTCCCATTATTCAGGGGGTGAGTATATAACAATGAAATATTGTGTGTTTTC
CATTTACCAAGTACTGTGTTTTGCATGGATTAACTCCTTTATTCTTACTAACTGCAGAAGACAC
TTATCCTCATAATTGAAATGGAGGCAGAGAATTTAACTTGGCCTACATTCTCTGTATGTTCATC
ACATTGAAATTATAGCTTATATGCTACTTTGTAATATACTTTTGTCTACTTCAAACAGCATGAT
ACATTTCACAACTTCCATTAAAAATTCATTAGTCACATA

hide sequence

RefSeq Acc Id:

XM_007968687 ⟹ XP_007966878

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	12	42,798,614 - 42,819,431 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	39,866,703 - 39,887,819 (+)	NCBI

Sequence:

show sequence

GACCTCAAATGATCCACCCGCCTCGGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCCACTGT
GCCCGGCCCCAGCGGCCAGTTTTCAAAGCCCCTCTGCTCAGCTTCCAGAGATCCCAGGAAACTC
TAAGCGGGAGCATCTCGTATCCCCACGATGCGACTGGTCACAAAACACGCGACCCGAGACACTG
AAAGTGGAGGCTTCTTGATGGATCAAGCTGCTTAGTTCTCATACCGACCCGCGGCCAGGCTGTA
AGACAGGTGGTCGGCTACAGACACAATCACAGCCACCTTGGACAAGGACCCGTGAGCTGACAGC
CATTAAGCTTCATAAACTGGTCCAAATCCAACGGGCCGCTACTGCCGGAAACGGAAAGTCCTCA
AGGGCGGGTGTTGGAAGCAGAGCGGAAGCGGAAGGAGGGTACCGGAAACGGTGTTTGGTGGCGC
CCGCGATGGCAGAACCTGTGTCTGTTGCGGCTGACTATCTCGCGGGCAGCCGGGCGCGCGCTGC
ACGCACAGTACTAGGTCAGGTGGTGCTCCCGGGTGAGGAGCTGCTCCTGCCGGAACAGGAGGAC
GCGGAAGGCCCTGGCGGTGCCGGGGAGCGACCGTTGAGCCTGAATGCTGGAGCGCGCTCGCGGG
TGCGCGTTGTATGCGGCCCGGGCTTGCGGCGCTGTGGGGACCGCCTGCTGGTCACCAAGTGCGG
CCGCCTCCGTCACAAGGAGCCCGGCAGTGGCAGCGGCGGCGGTGTTTACTGGGTGGACTCTCAG
CAGAAGCGGTATGTTCCAGTGAAAGGAGACCATGTGATTGGCATAGTGACAGCTAAATCTGGAG
ATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTGTCTTACTTGTCATTTGAAGG
TGCAACTAAAAGAAACAGACCAAATGTGCAGGTTGGAGATCTCATCTATGGCCAATTTGTGGTT
GCTAATAAAGACATGGAACCAGAGATGGTCTGTATTGACAGCTGTGGACGAGCCAATGGAATGG
GTGTCATTGGACAGGATGGTCTGCTTTTTAAAGTGACTCTGGGCTTAATTAGAAAGCTATTAGC
TCCAGACTGTGAAATCATACAGGAAGTGGGAAAACTCTATCCACTGGAGATAGTATTTGGAATG
AATGGAAGAATATGGGTTAAGGCAAAAACCATCCAGCAGACTTTAATTTTGGCAAACATTTTAG
AAGCTTGTGAACACATGACGTCAGATCAAAGAAAACAGATCTTCTCCAGATTGGCAGAAAGTTG
ATATAGGTGGACTTTTTTACAGATTCTTTACAACAGCCACCTTGGAACTGAGTGATCCAGTATA
GGAAATCAAACACTTTCCTAGTTTACTAAGGAATCCCAGAAGCT

hide sequence

RefSeq Acc Id:

XM_037998238 ⟹ XP_037854166

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	39,866,703 - 39,873,378 (+)	NCBI

RefSeq Acc Id:

XR_491884

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	12	42,798,609 - 42,803,358 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	39,866,661 - 39,870,995 (+)	NCBI

Sequence:

show sequence

CTCCTGACCTCAAATGATCCACCCGCCTCGGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCC
ACTGTGCCCGGCCCCAGCGGCCAGTTTTCAAAGCCCCTCTGCTCAGCTTCCAGAGATCCCAGGA
AACTCTAAGCGGGAGCATCTCGTATCCCCACGATGCGACTGGTCACAAAACACGCGACCCGAGA
CACTGAAAGTGGAGGCTTCTTGATGGATCAAGCTGCTTAGTTCTCATACCGACCCGCGGCCAGG
CTGTAAGACAGGTGGTCGGCTACAGACACAATCACAGCCACCTTGGACAAGGACCCGTGAGCTG
ACAGCCATTAAGCTTCATAAACTGGTCCAAATCCAACGGGCCGCTACTGCCGGAAACGGAAAGT
CCTCAAGGGCGGGTGTTGGAAGCAGAGCGGAAGCGGAAGGAGGGTACCGGAAACGGTGTTTGGT
GGCGCCCGCGATGGCAGAACCTGTGTCTGTTGCGGCTGACTATCTCGCGGGCAGCCGGGCGCGC
GCTGCACGCACAGTACTAGGTCAGGTGGTGCTCCCGGGTGAGGAGCTGCTCCTGCCGGAACAGG
AGGACGCGGAAGGCCCTGGCGGTGCCGGGGAGCGACCGTTGAGCCTGAATGCTGGAGCGCGCTC
GCGGGTGCGCGTTGTATGCGGCCCGGGCTTGCGGCGCTGTGGGGACCGCCTGCTGGTCACCAAG
TGCGGCCGCCTCCGTCACAAGGAGCCCGGCAGTGGCAGCGGCGGCGGTGTTTACTGGGTGGACT
CTCAGCAGAAGCGGTATGTTCCAGTGAAAGGAGACCATGTGATTGGCATAGTGACAGCTAAATC
TGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTGTCTTACTTGTCATTT
GAAGGTGCAACTAAAAGAAACAGACCAAATGTGCAGGTTGGAGATCTCATCTATGGCCAATTTG
TGGTTGCTAATAAAGACATGGAACCAGAGATGGTCTGTATTGACAGCTGTGGACGAGCCAATGG
AATGGGTGTCATTGGACAGGATGGTCTGCTTTTTAAAGTGACTCTGGGCTTAATTAGAAAGCCT
GTTCGTTAGTTGACTCAGCCCAAATGTGAAAACTGGCCTTTCCCCTGTTCTGAGTCACTTGAAT
ACAGATGCAGTCTGCAGTTGTACAGAATTATCAAATTTTTCTAATTATGGGGGTCACACGCAGC
TTAGATCGTGATGTTCAAGGTTATGTAGCCATTCACAGAAGGCTTCTGACACTCGGTCCTGGCT
ATTAGCTCCAGACTGTGAAATCATACAGGAAGTGGGAAAACTCTATCCACTGGAGATAGTATTT
GGAATGAATGGAAGAATATGGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_007966877	(Get FASTA)	NCBI Sequence Viewer
	XP_007966878	(Get FASTA)	NCBI Sequence Viewer
	XP_037854166	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000007030
	ENSCSAP00000007030.1

RefSeq Acc Id:	XP_007966878 ⟸ XM_007968687
- UniProtKB:	A0A0D9REJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007966877 ⟸ XM_007968686
- UniProtKB:	A0A0D9REJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000007030 ⟸ ENSCSAT00000008895

RefSeq Acc Id:	XP_037854166 ⟸ XM_037998238
- UniProtKB:	A0A0D9REJ1 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000010816	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000008895.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.100	UniProtKB/TrEMBL
	2.40.50.140	UniProtKB/TrEMBL
	3.30.1370.10	UniProtKB/TrEMBL
InterPro	Exosome_RNA_bind1/RRP40/RRP4	UniProtKB/TrEMBL
	KH_dom_type_1	UniProtKB/TrEMBL
	KH_dom_type_1_sf	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	RRP40_KH-I	UniProtKB/TrEMBL
	RRP40_N	UniProtKB/TrEMBL
	Rrp40_S1	UniProtKB/TrEMBL
KEGG Report	csab:103219173	UniProtKB/TrEMBL
NCBI Gene	EXOSC3	ENTREZGENE
PANTHER	EXOSOME COMPLEX COMPONENT RRP40	UniProtKB/TrEMBL
	PTHR21321	UniProtKB/TrEMBL
Pfam	KH_6	UniProtKB/TrEMBL
	RRP40_N_mamm	UniProtKB/TrEMBL
	RRP40_S1	UniProtKB/TrEMBL
Superfamily-SCOP	Ribosomal L27 protein-like	UniProtKB/TrEMBL
	SSF50249	UniProtKB/TrEMBL
	SSF54791	UniProtKB/TrEMBL
UniProt	A0A0D9REJ1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM