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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:gibberellin A3
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Accession:CHEBI:28833 term browser browse the term
Definition:A C19-gibberellin that is a pentacyclic diterpenoid responsible for promoting growth and elongation of cells in plants. Initially identified in Gibberella fujikuroi,it differs from gibberellin A1 in the presence of a double bond between C-3 and C-4.
Synonyms:exact_synonym: (1R,2R,5S,8S,9S,10R,11S,12S)-5,12-dihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1(5,8).0(1,10).0(2,8)]heptadec-13-ene-9-carboxylic acid;   2beta,7alpha-dihydroxy-1beta-methyl-8-methylidene-13-oxo-4a,1alpha-epoxymethano-4aalpha,4bbeta-gibb-3-ene-10beta-carboxylic acid
 related_synonym: Formula=C19H22O6;   GA3;   Gibberellic acid;   Gibberellin;   Gibberellinsaeure;   InChI=1S/C19H22O6/c1-9-7-17-8-18(9,24)5-3-10(17)19-6-4-11(20)16(2,15(23)25-19)13(19)12(17)14(21)22/h4,6,10-13,20,24H,1,3,5,7-8H2,2H3,(H,21,22)/t10-,11+,12-,13-,16-,17+,18+,19-/m1/s1;   InChIKey=IXORZMNAPKEEDV-OBDJNFEBSA-N;   SMILES=[H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)[C@@H](O)C=C[C@@]21OC3=O;   gibberellic acid GA3;   gibberellin 3
 alt_id: CHEBI:24243;   CHEBI:5340
 xref: AGR:IND44675921;   BPDB:371;   Beilstein:54346;   CAS:77-06-5;   DrugBank:DB07814;   HMDB:HMDB0003559;   KEGG:C01699;   KNApSAcK:C00000003;   LIPID_MAPS_instance:LMPR0104170002
 xref_mesh: MESH:C007842
 xref: MetaCyc:GIBBERELLIN;   PDBeChem:GA3;   PMID:18948165;   PMID:19815399;   PMID:21216576;   PMID:22044348;   PMID:22516192;   PMID:23076568;   PMID:23818834;   PMID:23857350;   PMID:24232845;   Reaxys:54346;   Wikipedia:Gibberellic_acid
 cyclic_relationship: is_conjugate_acid_of CHEBI:58590


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gibberellin A3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 multiple interactions
increases expression
EXP Decitabine promotes the reaction [gibberellic acid results in increased expression of CASP3 mRNA]; gibberellic acid promotes the reaction [Decitabine results in increased expression of CASP3 mRNA]
gibberellic acid results in increased expression of CASP3 mRNA; gibberellic acid results in increased expression of CASP3 protein
CTD PMID:31733319 NCBI chr16:48,845,011...48,863,249
Ensembl chr16:48,845,012...48,863,204
JBrowse link
G Casp8 caspase 8 decreases methylation
increases expression
EXP gibberellic acid results in decreased methylation of CASP8 gene; gibberellic acid results in decreased methylation of CASP8 promoter
gibberellic acid results in increased expression of CASP8 mRNA; gibberellic acid results in increased expression of CASP8 protein
CTD PMID:31733319 NCBI chr 9:65,614,142...65,662,624
Ensembl chr 9:65,614,142...65,662,106
JBrowse link
G Casp9 caspase 9 increases expression EXP gibberellic acid results in increased expression of CASP9 mRNA; gibberellic acid results in increased expression of CASP9 protein CTD PMID:31733319 NCBI chr 5:160,356,211...160,373,774
Ensembl chr 5:160,355,833...160,373,778
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha decreases expression EXP gibberellic acid results in decreased expression of DNMT3A mRNA CTD PMID:31733319 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta decreases expression EXP gibberellic acid results in decreased expression of DNMT3B mRNA CTD PMID:31733319 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Fas Fas cell surface death receptor increases expression EXP gibberellic acid results in increased expression of FAS mRNA; gibberellic acid results in increased expression of FAS protein CTD PMID:31733319 NCBI chr 1:252,589,785...252,624,790
Ensembl chr 1:252,589,785...252,624,790
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19781
    role 19726
      biological role 19726
        biochemical role 19319
          metabolite 19301
            eukaryotic metabolite 18965
              plant metabolite 17447
                gibberellin A3 6
                  gibberellin A3 O-beta-D-glucoside 0
                  gibberellin A3 methyl ester 0
                  gibberellin A3 norketone 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19781
    subatomic particle 19779
      composite particle 19779
        hadron 19779
          baryon 19779
            nucleon 19779
              atomic nucleus 19779
                atom 19779
                  main group element atom 19669
                    main group molecular entity 19669
                      s-block molecular entity 19434
                        hydrogen molecular entity 19429
                          hydrides 18757
                            organic hydride 18355
                              organic fundamental parent 18355
                                hydrocarbon 18074
                                  terpene 12611
                                    terpenoid 12175
                                      diterpenoid 11396
                                        gibberellin 6
                                          C19-gibberellin 6
                                            gibberellin A3 6
                                              gibberellin A3 O-beta-D-glucoside 0
                                              gibberellin A3 methyl ester 0
                                              gibberellin A3 norketone 0
paths to the root