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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:nigericin
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Accession:CHEBI:7569 term browser browse the term
Definition:A polyether antibiotic which affects ion transport and ATPase activity in mitochondria. It is produced by Streptomyces hygroscopicus.
Synonyms:exact_synonym: (2R)-2-[(2R,3S,6R)-6-{[(2S,4R,5R,7R,9R,10R)-2-{(2S,2'R,3'S,5R,5'R)-5'-[(2S,3S,5R,6R)-6-hydroxy-6-(hydroxymethyl)-3,5-dimethyltetrahydro-2H-pyran-2-yl]-2,3'-dimethyloctahydro-2,2'-bifuran-5-yl}-9-methoxy-2,4,10-trimethyl-1,6-dioxaspiro[4.5]dec-7-yl]methyl}-3-methyltetrahydro-2H-pyran-2-yl]propanoic acid
 related_synonym: Azalomycin M;   Formula=C40H68O11;   Helixin C;   InChI=1S/C40H68O11/c1-21-11-12-28(46-33(21)26(6)36(42)43)17-29-18-30(45-10)27(7)40(48-29)25(5)19-38(9,51-40)32-13-14-37(8,49-32)35-23(3)16-31(47-35)34-22(2)15-24(4)39(44,20-41)50-34/h21-35,41,44H,11-20H2,1-10H3,(H,42,43)/t21-,22-,23-,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34-,35+,37-,38-,39-,40+/m0/s1;   InChIKey=DANUORFCFTYTSZ-SJSJOXFOSA-N;   Polyetherin A;   SMILES=[H][C@@]1(CC[C@H](C)[C@@]([H])(O1)[C@@H](C)C(O)=O)C[C@@H]1C[C@@H](OC)[C@@H](C)[C@]2(O1)O[C@@](C)(C[C@H]2C)[C@@]1([H])CC[C@](C)(O1)[C@]1([H])O[C@]([H])(C[C@@H]1C)[C@@]1([H])O[C@@](O)(CO)[C@H](C)C[C@@H]1C
 alt_id: CHEBI:530451
 xref: CAS:28380-24-7;   KEGG:C11609;   KNApSAcK:C00018750
 xref_mesh: MESH:D009550
 xref: PMID:10341035;   PMID:10516103;   PMID:10996433;   PMID:15595852;   PMID:17618633;   PMID:20678563;   PMID:20709811;   PMID:20951746;   PMID:21257734;   PMID:22327078;   PMID:22493436;   PMID:7592045;   PMID:7638257;   PMID:7829226;   PMID:8010949;   PMID:8076364;   PMID:8717427;   PMID:8895841;   PMID:8913333;   PMID:9018148;   PMID:9178132;   PMID:9770325;   Patent:US3555150;   Reaxys:74670;   VSDB:2572;   Wikipedia:Nigericin



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nigericin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp9 aquaporin 9 multiple interactions ISO Nigericin inhibits the reaction [AQP9 protein results in increased uptake of Lactic Acid]; Nigericin inhibits the reaction [AQP9 protein results in increased uptake of Selenious Acid] CTD PMID:28798983 NCBI chr 9:71,017,941...71,075,170
Ensembl chr 9:71,017,941...71,075,964
JBrowse link
G Bax BCL2-associated X protein multiple interactions EXP Nigericin inhibits the reaction [neoisoliquiritin inhibits the reaction [Cadmium Chloride results in increased expression of BAX protein]] CTD PMID:38401882 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 multiple interactions EXP Nigericin inhibits the reaction [neoisoliquiritin inhibits the reaction [Cadmium Chloride results in decreased expression of BCL2 protein]] CTD PMID:38401882 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004
JBrowse link
G Casp1 caspase 1 multiple interactions
increases cleavage
ISO
EXP
[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] affects the activity of CASP1 protein; [Nigericin co-treated with Tetradecanoylphorbol Acetate] results in increased activity of CASP1 protein; CASP1 protein affects the reaction [Nigericin results in increased secretion of IL1B protein]; dapansutrile affects the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] affects the activity of CASP1 protein]
[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] binds to [CASP1 protein binds to NLRP3 protein]; [lipopolysaccharide, Escherichia coli O111 B4 co-treated with Nigericin] results in increased cleavage of CASP1 protein; [Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of and results in increased secretion of CASP1 protein; Arsenic Trioxide inhibits the reaction [Nigericin results in increased cleavage of CASP1 protein]; Chlorquinaldol inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of and results in increased secretion of CASP1 protein]; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] promotes the reaction [CASP1 protein binds to NLRP3 protein]]; lonidamine inhibits the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with Nigericin] results in increased cleavage of CASP1 protein]; sodium arsenite inhibits the reaction [Nigericin results in increased cleavage of CASP1 protein]
Nigericin inhibits the reaction [peiminine inhibits the reaction [Particulate Matter results in increased cleavage of CASP1 protein]]
CTD PMID:18403674 PMID:23430110 PMID:24337744 PMID:29378952 PMID:36002070 More... NCBI chr 9:5,298,517...5,307,281
Ensembl chr 9:5,298,508...5,307,290
JBrowse link
G Casp3 caspase 3 multiple interactions EXP Nigericin inhibits the reaction [neoisoliquiritin inhibits the reaction [Cadmium Chloride results in increased cleavage of CASP3 protein]] CTD PMID:38401882 NCBI chr 8:47,070,326...47,092,733
Ensembl chr 8:47,070,326...47,092,724
JBrowse link
G Dpp7 dipeptidylpeptidase 7 multiple interactions ISO Nigericin promotes the reaction [[DPP7 protein results in increased cleavage of Dipeptides] which results in increased abundance of 4-nitroaniline] CTD PMID:16725115 NCBI chr 2:25,242,302...25,246,365
Ensembl chr 2:25,242,288...25,246,371
JBrowse link
G Gsdmd gasdermin D multiple interactions EXP
ISO
4-hydroxybenzoic acid inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased cleavage of GSDMD protein]; [5-(3-(4-(4-benzylpiperazin-1-yl)-N-(4-phenylthiazol-2-yl))propanamide co-treated with 4-hydroxybenzoic acid] inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased cleavage of GSDMD protein]; [lipopolysaccharide, Escherichia coli O111 B4 co-treated with Nigericin] results in increased cleavage of GSDMD protein; [Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of and results in increased secretion of GSDMD protein; [Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased cleavage of GSDMD protein; Chlorquinaldol inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of and results in increased secretion of GSDMD protein]; lonidamine inhibits the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with Nigericin] results in increased cleavage of GSDMD protein]
Nigericin inhibits the reaction [peiminine inhibits the reaction [Particulate Matter results in increased cleavage of GSDMD protein]]
CTD PMID:36002070 PMID:36577999 PMID:36898572 PMID:39389441 NCBI chr15:75,733,990...75,739,257
Ensembl chr15:75,734,176...75,739,257
JBrowse link
G Il18 interleukin 18 multiple interactions ISO [lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL18 protein; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL18 protein] CTD PMID:29378952 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140
JBrowse link
G Il1b interleukin 1 beta multiple interactions
increases cleavage
increases secretion
EXP
ISO
2-amino-6-(2-(cyclopropylmethoxy)-6-hydroxyphenyl)-4-piperidin-4-yl nicotinonitrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL1B protein]; 2-amino-6-(2-(cyclopropylmethoxy)-6-hydroxyphenyl)-4-piperidin-4-yl nicotinonitrile promotes the reaction [dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL1B protein]]; 4-hydroxybenzoic acid inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased expression of IL1B mRNA]; 4-hydroxybenzoic acid inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased secretion of IL1B protein]; 5-(3-(4-(4-benzylpiperazin-1-yl)-N-(4-phenylthiazol-2-yl))propanamide inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased expression of IL1B mRNA]; [4-hydroxybenzoic acid co-treated with 5-(3-(4-(4-benzylpiperazin-1-yl)-N-(4-phenylthiazol-2-yl))propanamide] inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased expression of IL1B mRNA]; [5-(3-(4-(4-benzylpiperazin-1-yl)-N-(4-phenylthiazol-2-yl))propanamide co-treated with 4-hydroxybenzoic acid] inhibits the reaction [[Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased secretion of IL1B protein]; [lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL1B protein; [lipopolysaccharide, Escherichia coli O111 B4 co-treated with Nigericin] results in increased secretion of IL1B protein; [Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of and results in increased secretion of IL1B protein; [Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of IL1B protein; [Lipopolysaccharides co-treated with Nigericin] results in increased expression of IL1B protein; [Lipopolysaccharides co-treated with Nigericin] results in increased secretion of IL1B protein; [Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased expression of IL1B mRNA; [Nigericin co-treated with lipopolysaccharide, E coli O55-B5] results in increased secretion of IL1B protein; Arsenic Trioxide inhibits the reaction [Nigericin results in increased cleavage of IL1B protein]; Chlorquinaldol inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of and results in increased secretion of IL1B protein]; Chlorquinaldol inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased secretion of IL1B protein]; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL1B protein]; lonidamine inhibits the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with Nigericin] results in increased secretion of IL1B protein]; N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased cleavage of IL1B protein]; N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased secretion of IL1B protein]; Okadaic Acid inhibits the reaction [[Lipopolysaccharides co-treated with Nigericin] results in increased expression of IL1B protein]; sodium arsenite inhibits the reaction [Nigericin results in increased cleavage of IL1B protein]
[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL1B protein; [Nigericin co-treated with Tetradecanoylphorbol Acetate] results in increased expression of IL1B protein; CASP1 protein affects the reaction [Nigericin results in increased secretion of IL1B protein]; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of IL1B protein]; Disulfiram inhibits the reaction [Nigericin results in increased secretion of IL1B protein]; NLRP3 protein affects the reaction [Nigericin results in increased secretion of IL1B protein]; PYCARD protein affects the reaction [Nigericin results in increased secretion of IL1B protein]
CTD PMID:18403674 PMID:19130485 PMID:23430110 PMID:24337744 PMID:29378952 More... NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 multiple interactions ISO
EXP
NLRP3 protein affects the reaction [Nigericin results in increased secretion of IL1B protein]
Nigericin inhibits the reaction [peiminine inhibits the reaction [Particulate Matter results in increased expression of NLRP3 protein]]
[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] binds to [CASP1 protein binds to NLRP3 protein]; [lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] binds to [PYCARD protein binds to NLRP3 protein]; [lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] promotes the reaction [PYCARD protein binds to NLRP3 protein]; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] promotes the reaction [CASP1 protein binds to NLRP3 protein]]; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] promotes the reaction [PYCARD protein binds to NLRP3 protein]]; Nigericin inhibits the reaction [neoisoliquiritin inhibits the reaction [Cadmium Chloride results in increased expression of NLRP3 protein]]
CTD PMID:18403674 PMID:29378952 PMID:36898572 PMID:38401882 NCBI chr11:59,432,395...59,457,781
Ensembl chr11:59,432,394...59,457,782
JBrowse link
G Nnat neuronatin decreases response to substance ISO NNAT protein results in decreased susceptibility to Nigericin CTD PMID:12101027 NCBI chr 2:157,401,936...157,404,445
Ensembl chr 2:157,401,998...157,404,442
JBrowse link
G Pycard PYD and CARD domain containing multiple interactions ISO
EXP
PYCARD protein affects the reaction [Nigericin results in increased secretion of IL1B protein]
Nigericin inhibits the reaction [peiminine inhibits the reaction [Particulate Matter results in increased expression of PYCARD protein]]
[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] binds to [PYCARD protein binds to NLRP3 protein]; [lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] promotes the reaction [PYCARD protein binds to NLRP3 protein]; dapansutrile inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] promotes the reaction [PYCARD protein binds to NLRP3 protein]]; Nigericin inhibits the reaction [neoisoliquiritin inhibits the reaction [Cadmium Chloride results in increased expression of PYCARD protein]]
CTD PMID:18403674 PMID:29378952 PMID:36898572 PMID:38401882 NCBI chr 7:127,590,545...127,593,039
Ensembl chr 7:127,588,880...127,593,039
JBrowse link
G Star steroidogenic acute regulatory protein decreases expression EXP Nigericin results in decreased expression of STAR protein CTD PMID:16469751 NCBI chr 8:26,298,502...26,306,010
Ensembl chr 8:26,296,583...26,306,010
JBrowse link
G Tnf tumor necrosis factor multiple interactions EXP [lipopolysaccharide, E coli O55-B5 co-treated with Nigericin] results in increased secretion of TNF protein; [Lipopolysaccharides co-treated with Nigericin] results in increased expression of TNF protein CTD PMID:23430110 PMID:29378952 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link

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  CHEBI ontology 22304
    role 22290
      biological role 22289
        antimicrobial agent 19676
          nigericin 14
Path 2
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  CHEBI ontology 22304
    subatomic particle 22299
      composite particle 22299
        hadron 22299
          baryon 22299
            nucleon 22299
              atomic nucleus 22299
                atom 22299
                  main group element atom 22180
                    p-block element atom 22180
                      carbon group element atom 21982
                        carbon atom 21922
                          organic molecular entity 21922
                            heteroorganic entity 21566
                              organochalcogen compound 21048
                                organooxygen compound 20897
                                  ether 18355
                                    cyclic ether 12654
                                      polycyclic ether 1476
                                        nigericin 14
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