A2m (alpha-2-macroglobulin) - Rat Genome Database

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Gene: A2m (alpha-2-macroglobulin) Rattus norvegicus
Analyze
Symbol: A2m
Name: alpha-2-macroglobulin
RGD ID: 2004
Description: Enables endopeptidase inhibitor activity; identical protein binding activity; and neurotrophin binding activity. Involved in several processes, including acute inflammatory response; embryonic liver development; and luteinization. Located in extracellular space. Used to study hemolytic anemia and toxic shock syndrome. Biomarker of several diseases, including liver disease (multiple); membranous glomerulonephritis; osteonecrosis; peritonitis; and trypanosomiasis. Human ortholog(s) of this gene implicated in COVID-19; background diabetic retinopathy; multiple sclerosis; neurodegenerative disease (multiple); and obstructive lung disease. Orthologous to human A2M (alpha-2-macroglobulin); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; Alzheimer's disease pathway; immune response pathway; INTERACTS WITH (+)-pilocarpine; (+)-schisandrin B; (S)-amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A2m1; A2maa; A2MAC1; A2mb; AI893533; alpha-2-M; alpha-2-macroglobulin-like; alpha-2-macroglobulin-P; LOC100911545; Mam; MGC114358; RATA2MAC1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Is Marker For: QTLs:   Plsm2  
Candidate Gene For: Plsm2 Bp353
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84156,570,163 - 156,619,870 (+)NCBIGRCr8
mRatBN7.24154,897,770 - 154,947,787 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,897,877 - 154,947,786 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4161,158,697 - 161,208,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04156,942,158 - 156,991,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04155,571,666 - 155,634,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04154,309,426 - 154,359,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4154,309,426 - 154,359,137 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4154,423,209 - 154,472,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04221,393,233 - 221,442,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44158,103,711 - 158,153,423 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14158,348,624 - 158,398,358 (+)NCBI
Celera4143,730,195 - 143,781,190 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
A2mRatAlzheimer's disease no_associationISOA2M (Homo sapiens)10046015DNA:polymorphism: :p.I1000V (human)RGD 
A2mRatAlzheimer's disease no_associationISOA2M (Homo sapiens)1300322 RGD 
A2mRatAlzheimer's disease  ISOA2M (Homo sapiens)1302534DNA:deletion:splice junction:RGD 
A2mRatAlzheimer's disease  ISOA2M (Homo sapiens)10046016DNA:deletion more ...RGD 
A2mRatAlzheimer's disease no_associationISOA2M (Homo sapiens)10046016DNA:polymorphisms: :multipleRGD 
A2mRatAlzheimer's disease  ISOA2M (Homo sapiens)10046012DNA:insertion/deletion and substitutionRGD 
A2mRatAlzheimer's disease onsetISOA2M (Homo sapiens)10046014DNA:polymorphism: :p.I1000V (human)RGD 
A2mRatbackground diabetic retinopathy treatmentISOA2M (Homo sapiens)10046010 RGD 
A2mRatBurns  IEP 1598513 RGD 
A2mRatCardiomegaly  IDA 1549856 RGD 
A2mRatcerebral infarction disease_progressionISOA2M (Homo sapiens)13702087 RGD 
A2mRatCOVID-19 severityISOA2M (Homo sapiens)38500238DNA:SNPs: :RGD 
A2mRatCOVID-19  ISOA2M (Homo sapiens)9068941mRNA:decreased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
A2mRatDiabetic Cardiomyopathies treatmentIEP 10046044associated with Diabetes Mellitus and ExperimentalRGD 
A2mRatExperimental Arthritis  IEP 10046032protein:increased expression:serumRGD 
A2mRatExperimental Autoimmune Encephalomyelitis treatmentIDA 10046021 RGD 
A2mRatFemur Head Necrosis  IEP 10046018mRNA:increased expression:head of femurRGD 
A2mRatFever  IEP 10046042 RGD 
A2mRatheart disease  ISOA2M (Homo sapiens)10046031associated with HIV Infections and protein:increased expression:serumRGD 
A2mRathemolytic anemia  IDA 704364 RGD 
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Object Symbol
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Original Reference(s)
A2mRatAlzheimer's disease  ISOA2M (Homo sapiens)8554872ClinVar Annotator: match by term: ALPHA-2-MACROGLOBULIN POLYMORPHISMClinVarPMID:1370808 more ...
A2mRatmegacolon  ISOA2M (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
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Original Reference(s)
A2mRatacute kidney failure  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23052191
A2mRatAlzheimer's disease  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:9697696 more ...
A2mRatColonic Neoplasms  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15059925
A2mRatExperimental Liver Cirrhosis  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
A2mRathepatocellular adenoma  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15509519
A2mRathepatocellular carcinoma  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15509519
A2mRatliver cirrhosis  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26396155
A2mRatlung disease  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:2475424
A2mRatLung Neoplasms  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17902193 and PMID:19180532
A2mRatnephrotic syndrome  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11304663
A2mRatWilson disease  ISOA2M (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23519153
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Original Reference(s)
A2mRatParkinson's disease  ISOA2M (Homo sapiens)1331525 GAD 
A2mRatrheumatoid arthritis  ISOA2M (Homo sapiens)1331525 GAD 

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Original Reference(s)
A2mRat(+)-pilocarpine increases expressionEXP 6480464Pilocarpine results in increased expression of A2M mRNACTDPMID:17971868
A2mRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of A2M mRNA]CTDPMID:31150632
A2mRat(S)-amphetamine increases expressionEXP 6480464Dextroamphetamine results in increased expression of A2M mRNACTDPMID:16715494
A2mRat1-methylphenanthrene multiple interactionsISOA2M (Homo sapiens)6480464[Benzo(a)pyrene co-treated with 1-methylphenanthrene] affects the expression of A2M mRNACTDPMID:17690111
A2mRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of A2M mRNACTDPMID:12883083 and PMID:25380136
A2mRat1-naphthyl isothiocyanate affects expressionEXP 64804641-Naphthylisothiocyanate affects the expression of A2M mRNACTDPMID:18289764
A2mRat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of A2M mRNACTDPMID:17557909
A2mRat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of A2M mRNACTDPMID:32145629
A2mRat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of A2M mRNACTDPMID:32741896
A2mRat17beta-estradiol 3-benzoate increases methylationEXP 6480464estradiol 3-benzoate results in increased methylation of A2M promoterCTDPMID:27415467
A2mRat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of A2M mRNACTDPMID:32741896
A2mRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOA2m (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of A2M mRNACTDPMID:19770486 and PMID:33956508
A2mRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of A2M mRNACTDPMID:34747641
A2mRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of A2M mRNACTDPMID:21215274 more ...
A2mRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of A2M mRNA]CTDPMID:21215274
A2mRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of A2M mRNACTDPMID:21346803
A2mRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of A2M mRNACTDPMID:21346803
A2mRat2-deoxy-D-glucose increases uptakeISOA2M (Homo sapiens)6480464A2M protein modified form results in increased uptake of DeoxyglucoseCTDPMID:25720493
A2mRat2-deoxy-D-glucose multiple interactionsISOA2M (Homo sapiens)6480464HSPA5 protein affects the reaction [A2M protein modified form results in increased uptake of Deoxyglucose]CTDPMID:25720493
A2mRat2-hydroxypropanoic acid increases secretionISOA2M (Homo sapiens)6480464A2M protein modified form results in increased secretion of Lactic AcidCTDPMID:25720493

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Biological Process
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Cellular Component

  
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Original Reference(s)
A2mRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
A2mRatextracellular region located_inIEAInterPro:IPR009048 and InterPro:IPR0365951600115GO_REF:0000002InterProGO_REF:0000002
A2mRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
A2mRatextracellular space  IDA 10046028 RGD 
A2mRatextracellular space is_active_inIBAPANTHER:PTN000151154 and A2m (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
A2mRatextracellular space located_inIEAInterPro:IPR0116261600115GO_REF:0000002InterProGO_REF:0000002
A2mRatextracellular space  ISOLOC102021956 (Chinchilla lanigera)1624291 RGD (All species) and (All species)

Molecular Function
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Original Reference(s)
A2mRatbrain-derived neurotrophic factor binding  IDA 10046023 RGD 
A2mRatcalcium-dependent protein binding enablesISOA2M (Homo sapiens)1624291UniProtKB:E1BGJ0 more ...RGDPMID:15226301
A2mRatendopeptidase inhibitor activity  IDA 7411612 RGD 
A2mRatendopeptidase inhibitor activity enablesIEAInterPro:IPR001599 and InterPro:IPR0028901600115GO_REF:0000002InterProGO_REF:0000002
A2mRatendopeptidase inhibitor activity enablesIBAMGI:87854 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
A2mRatendopeptidase inhibitor activity enablesISOA2M (Homo sapiens)1624291 PMID:7679575RGDPMID:7679575
A2mRatenzyme binding enablesISOA2M (Homo sapiens)1624291UniProtKB:P04180 and PMID:11435418RGDPMID:11435418
A2mRatgrowth factor binding enablesISOA2M (Homo sapiens)1624291 PMID:9398211RGDPMID:9398211
A2mRatidentical protein binding  IPIA2m (Rattus norvegicus)10046030homodimerization and homotetramerizationRGD 
A2mRatinterleukin-1 binding enablesISOA2M (Homo sapiens)1624291 PMID:9714181RGDPMID:9714181
A2mRatinterleukin-8 binding enablesISOA2M (Homo sapiens)1624291UniProtKB:P10145 and PMID:10880251RGDPMID:10880251
A2mRatnerve growth factor binding  IDA 10046023 RGD 
A2mRatpeptidase inhibitor activity enablesIEAUniProtKB-KW:KW-0082 and UniProtKB-KW:KW-06461600115GO_REF:0000043UniProtGO_REF:0000043
A2mRatprotease binding enablesISOA2M (Homo sapiens)1624291UniProtKB:P00747 more ...RGDPMID:18485748 and PMID:7679575
A2mRatprotease binding enablesIBAPANTHER:PTN008320188 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
A2mRatprotein binding enablesISOA2M (Homo sapiens)1624291UniProtKB:A4FUJ8 more ...RGDPMID:14687906 more ...
A2mRatprotein binding enablesISOA2m (Mus musculus)1624291PR:Q91ZX7 PMID:17920016RGDPMID:17920016
A2mRatserine-type endopeptidase inhibitor activity enablesISOA2M (Homo sapiens)1624291 PMID:12538697RGDPMID:12538697
A2mRatserine-type endopeptidase inhibitor activity enablesIEAUniProtKB-KW:KW-07221600115GO_REF:0000043UniProtGO_REF:0000043
A2mRatsignaling receptor binding enablesISOA2M (Homo sapiens)1624291 PMID:15226301RGDPMID:15226301
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RGD Manual Annotations


  

Imported Annotations - KEGG (archival)

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Original Reference(s)
A2mRatcoagulation cascade pathway   IEA 6907045 KEGGrno:04610
A2mRatcomplement system pathway  IEA 6907045 KEGGrno:04610

Imported Annotations - PID (archival)

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Original Reference(s)
A2mRatinterleukin-6 signaling pathway   ISOA2M (Homo sapiens)6484113 PIDPID:200146

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#
Reference Title
Reference Citation
1. Role of prostaglandins in acute phase proteins in inflammation. Anbalagan K and Sadique J, Biochem Med. 1984 Apr;31(2):236-45.
2. Intrahepatic STAT-3 activation and acute phase gene expression predict outcome after CLP sepsis in the rat. Andrejko KM, etal., Am J Physiol. 1998 Dec;275(6 Pt 1):G1423-9.
3. Carbon dioxide pneumoperitoneum alters acute-phase response induced by lipopolysaccharide. Are C, etal., Surg Endosc. 2002 Oct;16(10):1464-7. Epub 2002 Jun 4.
4. The genetic association database. Becker KG, etal., Nat Genet. 2004 May;36(5):431-2.
5. Cancer-related anemia in a rat model: alpha2-macroglobulin from Yoshida sarcoma shortens erythrocyte survival. Bhanushali AA, etal., Eur J Haematol 2002 Jan;68(1):42-8.
6. Alpha-2 macroglobulin is genetically associated with Alzheimer disease. Blacker D, etal., Nat Genet 1998 Aug;19(4):357-60.
7. Alpha 2 macroglobulin activity in rats infected with Typanosoma lewisi and treated with cyclophosphamide and its effect on the malignancy of the disease. Budovsky A, etal., J Vector Borne Dis. 2007 Jun;44(2):128-36.
8. Association of alpha 2-macroglobulin polymorphisms and Alzheimer disease in Mainland Han Chinese. Chen D, etal., J Neurol Sci. 2004 Jan 15;217(1):13-5.
9. Gene expression profiles of livers from thermally injured rats. Dasu MR, etal., Gene. 2004 Feb 18;327(1):51-60.
10. Alpha-2 macroglobulin polymorphism and Alzheimer disease risk in the UK. Dow DJ, etal., Nat Genet 1999 May;22(1):16-7; author reply 21-2.
11. The development of rat alpha 2-macroglobulin. Studies in vivo and in cultured fetal rat hepatocytes. Fletcher S, etal., Eur J Biochem. 1988 Feb 1;171(3):703-9.
12. Hormonal regulation and tissue-specific localization of alpha 2-macroglobulin in rat ovarian follicles and corpora lutea. Gaddy-Kurten D, etal., Endocrinology. 1989 Dec;125(6):2985-95.
13. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14. Alpha 2-macroglobulin synthesis in an astrocyte subpopulation. Gebicke-Haerter PJ, etal., J Neurochem. 1987 Oct;49(4):1139-45.
15. Sequence of rat liver alpha 2-macroglobulin and acute phase control of its messenger RNA. Gehring MR, etal., J Biol Chem 1987 Jan 5;262(1):446-54.
16. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
17. Inflammatory and metalloproteinases profiles predict three-month poor outcomes in ischemic stroke treated with thrombolysis. Gori AM, etal., J Cereb Blood Flow Metab. 2017 Sep;37(9):3253-3261. doi: 10.1177/0271678X17695572. Epub 2017 Mar 7.
18. 6-sulphanilamidoindazole arthritis of rats: relation between acute-phase proteins, degree of arthritis and treatment with soybean trypsin inhibitor. Hirschelmann R, etal., Agents Actions. 1980 Nov;10(5):431-4.
19. Isolation of bona fide differentially expressed genes in the 18-hour sepsis liver by suppression subtractive hybridization. Hsieh YC, etal., Shock. 2004 Jun;21(6):549-55.
20. Disorders of vesicles of lysosomal lineage: the Hermansky-Pudlak syndromes. Huizing M and Gahl WA, Curr Mol Med. 2002 Aug;2(5):451-67.
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PMID:1725450   PMID:2414291   PMID:2466233   PMID:2473946   PMID:9398211   PMID:9714181   PMID:10880251   PMID:11435418   PMID:12223092   PMID:12477932   PMID:12538697   PMID:15226301  
PMID:15272003   PMID:15489334   PMID:17071617   PMID:17487688   PMID:17565389   PMID:18485748   PMID:18701465   PMID:19796622   PMID:20458337   PMID:20848291   PMID:21188621   PMID:21362503  
PMID:21642630   PMID:21669904   PMID:22516433   PMID:23376485   PMID:23533145   PMID:26746007   PMID:26895739   PMID:27301375   PMID:29476059   PMID:36894970  



A2m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84156,570,163 - 156,619,870 (+)NCBIGRCr8
mRatBN7.24154,897,770 - 154,947,787 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,897,877 - 154,947,786 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4161,158,697 - 161,208,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04156,942,158 - 156,991,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04155,571,666 - 155,634,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04154,309,426 - 154,359,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4154,309,426 - 154,359,137 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4154,423,209 - 154,472,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04221,393,233 - 221,442,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44158,103,711 - 158,153,423 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14158,348,624 - 158,398,358 (+)NCBI
Celera4143,730,195 - 143,781,190 (+)NCBICelera
Cytogenetic Map4q42NCBI
A2M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38129,067,708 - 9,116,229 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl129,067,664 - 9,116,229 (-)EnsemblGRCh38hg38GRCh38
GRCh37129,220,304 - 9,268,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36129,111,571 - 9,159,825 (-)NCBINCBI36Build 36hg18NCBI36
Build 34129,111,576 - 9,159,754NCBI
Celera1210,757,430 - 10,805,676 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef129,000,837 - 9,049,088 (-)NCBIHuRef
CHM1_1129,189,284 - 9,237,532 (-)NCBICHM1_1
T2T-CHM13v2.0129,049,893 - 9,098,416 (-)NCBIT2T-CHM13v2.0
A2m
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396121,612,920 - 121,656,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6121,612,335 - 121,656,186 (+)EnsemblGRCm39 Ensembl
GRCm386121,636,165 - 121,679,238 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6121,635,376 - 121,679,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv376121,586,191 - 121,629,256 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366121,593,574 - 121,644,846 (+)NCBIMGSCv36mm8
MGSCv366122,445,338 - 122,497,328 (+)NCBIMGSCv36mm8
Celera6123,474,284 - 123,517,770 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.49NCBI
LOC102021956
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554136,019,082 - 6,062,529 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554136,019,457 - 6,062,366 (+)NCBIChiLan1.0ChiLan1.0
LOC100979269
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21014,596,200 - 14,644,826 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11214,592,959 - 14,641,585 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0129,154,457 - 9,202,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1129,385,359 - 9,434,011 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl129,385,359 - 9,433,979 (-)Ensemblpanpan1.1panPan2
A2M
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12736,654,328 - 36,695,775 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,920,641 - 9,962,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,002,478 - 37,044,674 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,002,374 - 37,044,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12736,883,699 - 36,925,608 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02736,918,717 - 36,960,000 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,452,043 - 9,493,920 (-)NCBIUU_Cfam_GSD_1.0
LOC101959212
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,303,198 - 98,346,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936870424,951 - 468,167 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936870424,832 - 468,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
A2M
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,440,810 - 62,483,678 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,406,928 - 62,483,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,274,903 - 65,320,342 (+)NCBISscrofa10.2Sscrofa10.2susScr3

.

.
Variants in A2m
210 total Variants

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000019346
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat

1 to 10 of 44 rows
D4Mit20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,902,669 - 154,902,892 (+)MAPPERmRatBN7.2
Rnor_6.04154,314,020 - 154,314,242NCBIRnor6.0
Rnor_6.04154,427,762 - 154,427,984NCBIRnor6.0
Rnor_5.04221,510,881 - 221,511,103UniSTSRnor5.0
Rnor_5.04221,397,827 - 221,398,049UniSTSRnor5.0
RGSC_v3.44158,108,304 - 158,108,528RGDRGSC3.4
RGSC_v3.44158,108,305 - 158,108,527UniSTSRGSC3.4
RGSC_v3.14158,353,240 - 158,353,464RGD
Celera4143,736,074 - 143,736,296UniSTS
Celera4143,734,692 - 143,736,296UniSTS
RH 3.4 Map4997.54RGD
RH 3.4 Map4997.54UniSTS
RH 2.0 Map41012.9RGD
Cytogenetic Map4q42UniSTS
D4Wox16  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84156,568,282 - 156,568,425 (+)Marker Load Pipeline
mRatBN7.24154,896,195 - 154,896,338 (+)MAPPERmRatBN7.2
Rnor_6.04154,307,546 - 154,307,688NCBIRnor6.0
Rnor_6.04154,421,288 - 154,421,430NCBIRnor6.0
Rnor_5.04221,504,407 - 221,504,549UniSTSRnor5.0
Rnor_5.04221,391,353 - 221,391,495UniSTSRnor5.0
RGSC_v3.44158,101,831 - 158,101,973UniSTSRGSC3.4
RGSC_v3.44158,101,830 - 158,101,973RGDRGSC3.4
RGSC_v3.14158,346,766 - 158,346,909RGD
Celera4143,728,315 - 143,728,457UniSTS
RH 3.4 Map4997.91RGD
RH 3.4 Map4997.91UniSTS
Cytogenetic Map4q42UniSTS
D4Arb15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,896,113 - 154,896,328 (+)MAPPERmRatBN7.2
Rnor_6.04154,307,464 - 154,307,678NCBIRnor6.0
Rnor_6.04154,421,206 - 154,421,420NCBIRnor6.0
Rnor_5.04221,391,271 - 221,391,485UniSTSRnor5.0
Rnor_5.04221,504,325 - 221,504,539UniSTSRnor5.0
RGSC_v3.44158,101,748 - 158,101,963RGDRGSC3.4
RGSC_v3.44158,101,749 - 158,101,963UniSTSRGSC3.4
RGSC_v3.14158,346,684 - 158,346,899RGD
Celera4143,728,233 - 143,728,447UniSTS
RH 3.4 Map4997.5UniSTS
RH 3.4 Map4997.5RGD
RH 2.0 Map4989.4RGD
SHRSP x BN Map475.9499RGD
Cytogenetic Map4q42UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
14 1 12 138 105 95 63 26 63 12 169 66 108 25 78 32


1 to 30 of 32 rows
RefSeq Transcripts NM_012488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH002120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY887133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY919611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY921651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 32 rows

Ensembl Acc Id: ENSRNOT00000019346   ⟹   ENSRNOP00000019346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,897,877 - 154,947,786 (+)Ensembl
Rnor_6.0 Ensembl4154,309,426 - 154,359,137 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075799   ⟹   ENSRNOP00000066130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,899,373 - 154,945,739 (+)Ensembl
Rnor_6.0 Ensembl4154,423,209 - 154,472,924 (+)Ensembl
RefSeq Acc Id: NM_012488   ⟹   NP_036620
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84156,570,163 - 156,619,870 (+)NCBI
mRatBN7.24154,898,076 - 154,947,787 (+)NCBI
Rnor_6.04154,309,426 - 154,359,138 (+)NCBI
Rnor_5.04221,393,233 - 221,442,945 (+)NCBI
RGSC_v3.44158,103,711 - 158,153,423 (+)RGD
Celera4143,730,195 - 143,781,190 (+)RGD
Sequence:
RefSeq Acc Id: NP_036620   ⟸   NM_012488
- Peptide Label: precursor
- UniProtKB: Q4FZY3 (UniProtKB/Swiss-Prot),   P06238 (UniProtKB/Swiss-Prot),   A6ILD0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019346   ⟸   ENSRNOT00000019346
Ensembl Acc Id: ENSRNOP00000066130   ⟸   ENSRNOT00000075799
Name Modeler Protein Id AA Range Protein Structure
AF-P06238-F1-model_v2 AlphaFold P06238 1-1472 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 61 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43173 BioCyc
Ensembl Genes ENSRNOG00000028896 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000045772 Ensembl
Ensembl Transcript ENSRNOT00000019346 ENTREZGENE
  ENSRNOT00000019346.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.10.20 UniProtKB/Swiss-Prot
  2.20.130.20 UniProtKB/Swiss-Prot
  2.60.120.1540 UniProtKB/Swiss-Prot
  2.60.40.10 UniProtKB/Swiss-Prot
  2.60.40.1930 UniProtKB/Swiss-Prot
  2.60.40.1940 UniProtKB/Swiss-Prot
  2.60.40.690 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7458629 IMAGE-MGC_LOAD
InterPro A-macroglobulin_rcpt-bd UniProtKB/Swiss-Prot
  A-macroglobulin_rcpt-bd_sf UniProtKB/Swiss-Prot
  A2M/Complement_sys UniProtKB/Swiss-Prot
  A2M_N_BRD UniProtKB/Swiss-Prot
  A2M_TED UniProtKB/Swiss-Prot
  Alpha-macroglob_thiol-ester_cl UniProtKB/Swiss-Prot
  Alpha-macroglobulin_TED UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_E-set UniProtKB/Swiss-Prot
  Macroglobln_a2 UniProtKB/Swiss-Prot
  MacrogloblnA2_CS UniProtKB/Swiss-Prot
  MG2 UniProtKB/Swiss-Prot
  MG3 UniProtKB/Swiss-Prot
  MG4 UniProtKB/Swiss-Prot
  Terpenoid_cyclase/PrenylTrfase UniProtKB/Swiss-Prot
KEGG Report rno:24153 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114358 IMAGE-MGC_LOAD
NCBI Gene 24153 ENTREZGENE
PANTHER ALPHA-2-MACROGLOBULIN UniProtKB/Swiss-Prot
  MACROGLOBULIN / COMPLEMENT UniProtKB/Swiss-Prot
Pfam A2M UniProtKB/Swiss-Prot
  A2M_BRD UniProtKB/Swiss-Prot
  A2M_recep UniProtKB/Swiss-Prot
  MG2 UniProtKB/Swiss-Prot
  MG3 UniProtKB/Swiss-Prot
  MG4 UniProtKB/Swiss-Prot
  TED_complement UniProtKB/Swiss-Prot
1 to 40 of 61 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 A2m  alpha-2-macroglobulin  LOC100911545  alpha-2-macroglobulin-like  Data merged from RGD:6492449 737654 PROVISIONAL
2012-07-05 LOC100911545  alpha-2-macroglobulin-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-16 A2m    A2m1  alpha-2-macroglobulin  Symbol updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2002-06-10 A2m  alpha-2-macroglobulin      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_expression may be induced during the regeneration of hepatocytes after liver damage 67925
gene_expression may be induced during the regeneration of hepatocytes after liver damage 70249
gene_process has a role in the acute-phase response to tissue damage and infection 67925
gene_process has a role in the acute-phase response to tissue damage and infection 70249
gene_process inhibits proteinases 67925
gene_process inhibits proteinases 70249