Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:axon initial segment
go back to main search page
Accession:GO:0043194 term browser browse the term
Definition:Portion of the axon proximal to the neuronal cell body, at the level of the axon hillock. The action potentials that propagate along the axon are generated at the level of this initial segment.
Synonyms:exact_synonym: initial segment
 xref: NIF_Subcellular:sao256000789


show annotations for term's descendants           Sort by:
axon initial segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam22 ADAM metallopeptidase domain 22 IDA MMO:0000538 RGD PMID:30598502 RGD:153298976 NCBI chr 4:25,716,055...25,970,932
Ensembl chr 4:25,715,990...25,964,962 		JBrowse link
G Ank3 ankyrin 3 located_in IDA
ISO
IEA
IMP		 (MGI:5426783|PMID:11724816), (MGI:5883190|PMID:27356871), (MGI:6212949|PMID:25950943), (PMID:20877009), (PMID:26671463)
GO_REF:0000107
PMID:28426968
(PMID:27356871)		 RGD
Ensembl		 PMID:11724816 PMID:20877009 PMID:25950943 PMID:26671463 PMID:27356871 More... GO_REF:0000107 MGI:5426783 MGI:5883190 MGI:6212949, RGD:6767287, RGD:8553674, RGD:13514087, RGD:13800538 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300 		JBrowse link
G Bcan brevican IDA MMO:0000538 RGD PMID:17709431 RGD:14392774 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460 		JBrowse link
G Bin1 bridging integrator 1 located_in IDA PMID:9182667 Alzheimers_University_of_Toronto PMID:9182667 RGD:8553847 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263 		JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta located_in ISO (PMID:20877009) RGD PMID:20877009 NCBI chr 2:215,023,785...215,287,351
Ensembl chr 2:215,024,004...215,286,178 		JBrowse link
G Cck cholecystokinin IDA nonpyramidal neurons in the basolateral amygdalar complex after colchicine treatment RGD PMID:12763251 RGD:1626094 NCBI chr 8:121,153,499...121,160,194
Ensembl chr 8:121,153,500...121,160,084 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 located_in IDA PMID:11068136 UniProt PMID:11068136 RGD:405650339 NCBI chr11:80,197,741...80,211,657
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 IDA RGD PMID:18434027 RGD:6902905 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Cntn2 contactin 2 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:18509034)		 Ensembl
RGD		 PMID:18509034 GO_REF:0000107 NCBI chr13:43,942,868...43,975,973
Ensembl chr13:43,947,265...43,975,887 		JBrowse link
G Cntnap2 contactin associated protein 2 is_active_in ISO (PMID:18509034) RGD PMID:18509034 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027 		JBrowse link
G Dlg2 discs large MAGUK scaffold protein 2 is_active_in ISO MGI:2388036 (PMID:18509034) RGD PMID:18509034 NCBI chr 1:144,451,653...146,503,949
Ensembl chr 1:144,451,472...146,499,475 		JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 is_active_in ISO (PMID:18509034) RGD PMID:18509034 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682 		JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 is_active_in ISO (PMID:18509034) RGD PMID:18509034 NCBI chr 2:194,704,555...194,718,387
Ensembl chr 2:194,704,639...194,718,400 		JBrowse link
G Kcna4 potassium voltage-gated channel subfamily A member 4 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:18509034)		 Ensembl
RGD		 PMID:18509034 GO_REF:0000107 NCBI chr 3:93,756,399...93,778,004
Ensembl chr 3:93,756,446...93,769,162 		JBrowse link
G Kcnab2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 is_active_in ISO (PMID:18509034) RGD PMID:18509034 NCBI chr 5:162,899,511...162,988,057
Ensembl chr 5:162,901,896...162,988,243 		JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 located_in
is_active_in		 ISO
IDA		 (MGI:3617955|PMID:16525039)
(PMID:14762142), (PMID:24333508)
MMO:0000662		 RGD PMID:14762142 PMID:16525039 PMID:24333508 PMID:17311847 MGI:3617955, RGD:153344585 NCBI chr 3:168,194,776...168,253,831
Ensembl chr 3:168,195,357...168,275,071 		JBrowse link
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 is_active_in
located_in		 IDA
ISO
IBA
IEA		 (PMID:14762142), (PMID:24333508)
GO_REF:0000033
(MGI:3617955|PMID:16525039)
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:14762142 PMID:16525039 PMID:24333508 PMID:24333508 GO_REF:0000033 GO_REF:0000107 MGI:3617955, RGD:9686369 NCBI chr 7:97,730,219...98,025,652
Ensembl chr 7:97,730,465...98,025,653 		JBrowse link
G Lgi1 leucine-rich, glioma inactivated 1 IDA MMO:0000538 RGD PMID:30598502 RGD:153298976 NCBI chr 1:236,043,269...236,084,617
Ensembl chr 1:236,042,954...236,084,616 		JBrowse link
G Lrrc7 leucine rich repeat containing 7 is_active_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:8824323 GO_REF:0000033, RGD:1299511 NCBI chr 2:247,146,616...247,634,945
Ensembl chr 2:247,147,752...247,634,547 		JBrowse link
G Map1a microtubule-associated protein 1A located_in ISO (MGI:5632407|PMID:25788676) RGD PMID:25788676 MGI:5632407 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899 		JBrowse link
G Map2 microtubule-associated protein 2 located_in IDA
ISO		 PMID:28426968
(MGI:6148385|PMID:28426968)		 RGD PMID:28426968 PMID:28426968 MGI:6148385, RGD:13514087 NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809 		JBrowse link
G Nav1 neuron navigator 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26671463)		 GO_Central
RGD		 PMID:26671463 GO_REF:0000033 NCBI chr13:46,866,972...47,119,368
Ensembl chr13:46,873,689...47,126,449 		JBrowse link
G Nfasc neurofascin located_in IDA
ISO		 (PMID:26671463)
PMID:28426968
PMID:11724816
PMID:27356871		 RGD PMID:26671463 PMID:22649224 PMID:28426968 PMID:11724816 PMID:27356871 RGD:12904752, RGD:13514087, RGD:8553674, RGD:12793037 NCBI chr13:43,997,223...44,183,863
Ensembl chr13:43,997,224...44,183,880 		JBrowse link
G Nrcam neuronal cell adhesion molecule located_in IDA MMO:0000538
PMID:11724816		 RGD
BHF-UCL		 PMID:17709431 PMID:11724816 RGD:14392774, RGD:8553674 NCBI chr 6:61,402,813...61,698,536
Ensembl chr 6:61,329,863...61,702,992 		JBrowse link
G Scn1a sodium voltage-gated channel alpha subunit 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:17537961)		 Ensembl
RGD		 PMID:17537961 GO_REF:0000107 NCBI chr 3:50,952,790...51,071,804
Ensembl chr 3:50,952,791...51,071,699 		JBrowse link
G Scn2a sodium voltage-gated channel alpha subunit 2 IDA RGD PMID:12036953 RGD:625497 NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214 		JBrowse link
G Scn8a sodium voltage-gated channel alpha subunit 8 located_in IDA PMID:11724816 BHF-UCL PMID:11724816 RGD:8553674 NCBI chr 7:131,982,152...132,156,075
Ensembl chr 7:131,982,480...132,151,292 		JBrowse link
G Sptbn4 spectrin, beta, non-erythrocytic 4 located_in IDA
ISO		 MMO:0000538
(MGI:2181223|PMID:11807096), (MGI:5883190|PMID:27356871), (PMID:20877009), (PMID:26671463)
PMID:28426968
PMID:11086001		 RGD PMID:11807096 PMID:20877009 PMID:26671463 PMID:27356871 PMID:17709431 More... MGI:2181223 MGI:5883190, RGD:14392774, RGD:13514087, RGD:8553353 NCBI chr 1:82,650,750...82,738,345
Ensembl chr 1:82,650,751...82,737,228 		JBrowse link
G Trim46 tripartite motif-containing 46 located_in IEA
ISO		 GO_REF:0000107
(PMID:26671463)		 Ensembl
RGD		 PMID:26671463 GO_REF:0000107 NCBI chr 2:174,641,494...174,654,237
Ensembl chr 2:174,641,496...174,654,141 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20624
    cellular anatomical entity 20384
      axon initial segment 29
Path 2
Term Annotations click to browse term
  cellular_component 20624
    cellular anatomical entity 20384
      cell projection 2621
        plasma membrane bounded cell projection 2539
          neuron projection 1609
            axon 862
              main axon 89
                axon initial segment 29
paths to the root