Nav1 (neuron navigator 1) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Grant Resources Citing RGD About Us Contact Us
Search by Genomic Position Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quantitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nav1 (neuron navigator 1) Rattus norvegicus
Analyze
Symbol: Nav1
Name: neuron navigator 1
RGD ID: 1590261
Description: Predicted to be involved in microtubule bundle formation and neuron migration. Predicted to be active in axon initial segment and microtubule cytoskeleton. Orthologous to human NAV1 (neuron navigator 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685707; LOC685727; similar to neuron navigator 1; similar to neuron navigator 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,418,755 - 49,671,117 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1349,418,755 - 49,671,004 (-)EnsemblGRCr8
mRatBN7.21346,866,972 - 47,119,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd1348,797,981 - 49,051,314 (-)NCBI
Lyon_Normotensive1349,026,372 - 49,278,629 (-)NCBI
Lyon_Hypertensive1348,991,864 - 49,244,122 (-)NCBI
F344_StmMcwi1348,952,419 - 49,205,801 (-)NCBI
Rnor_6.01352,260,474 - 52,515,016 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,267,254 - 52,514,875 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01357,313,875 - 57,563,014 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41348,445,809 - 48,592,671 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1347,186,511 - 47,438,045 (-)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antimycin A  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
DDT  (EXP)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenpyroximate  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
inulin  (ISO)
LDN-193189  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
morphine  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15797708   PMID:26671463   PMID:37192244  


Genomics

Comparative Map Data
Nav1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,418,755 - 49,671,117 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1349,418,755 - 49,671,004 (-)EnsemblGRCr8
mRatBN7.21346,866,972 - 47,119,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd1348,797,981 - 49,051,314 (-)NCBI
Lyon_Normotensive1349,026,372 - 49,278,629 (-)NCBI
Lyon_Hypertensive1348,991,864 - 49,244,122 (-)NCBI
F344_StmMcwi1348,952,419 - 49,205,801 (-)NCBI
Rnor_6.01352,260,474 - 52,515,016 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,267,254 - 52,514,875 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01357,313,875 - 57,563,014 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41348,445,809 - 48,592,671 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1347,186,511 - 47,438,045 (-)NCBICelera
Cytogenetic Map13q13NCBI
NAV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,539,127 - 201,826,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,538,946 - 201,826,969 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371201,508,255 - 201,796,097 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,884,073 - 200,061,078 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341198,349,106 - 198,526,112NCBI
Celera1174,741,322 - 174,919,920 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,783,272 - 172,961,999 (+)NCBIHuRef
CHM1_11203,039,687 - 203,218,343 (+)NCBICHM1_1
T2T-CHM13v2.01200,796,899 - 201,084,738 (+)NCBIT2T-CHM13v2.0
Nav1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,362,318 - 135,616,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,362,318 - 135,616,086 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381135,434,580 - 135,688,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,434,580 - 135,688,105 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371137,331,157 - 137,481,932 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361137,255,284 - 137,402,120 (-)NCBIMGSCv36mm8
Celera1138,063,704 - 138,216,268 (-)NCBICelera
Cytogenetic Map1E4NCBI
Nav1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,644,421 - 37,890,151 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495540637,644,715 - 37,896,759 (+)NCBIChiLan1.0ChiLan1.0
NAV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,555,666 - 47,843,314 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,520,387 - 47,808,069 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,136,609 - 177,424,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,437,978 - 181,725,682 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,547,017 - 181,718,626 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
NAV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,134,208 - 1,305,204 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,140,824 - 1,304,213 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha71,184,998 - 1,427,926 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.071,141,131 - 1,384,404 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,147,319 - 1,310,916 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,129,231 - 1,372,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,237,249 - 1,480,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,261,503 - 1,504,441 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nav1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11030,027,365 - 30,279,955 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934473,429,618 - 73,682,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,670,691 - 2,819,826 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,667,377 - 2,917,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,885,798 - 24,102,340 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11023,885,721 - 24,104,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,617,901 - 28,633,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12527,744,314 - 28,025,197 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605528,373,531 - 28,668,885 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12527,593,875 - 27,872,515 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,594,709 - 27,761,637 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Nav1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248078,945,808 - 9,196,005 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,196,073 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl2444,107,432 - 44,382,991 (+)Ensembl
Nav1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v110107,415 - 279,172 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Nav1
3000 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:406
Count of miRNA genes:173
Interacting mature miRNAs:206
Transcripts:ENSRNOT00000011801, ENSRNOT00000037100, ENSRNOT00000064758, ENSRNOT00000067720
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134627292251216694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134599007750392939Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134778041850392939Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
D13Got31  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21346,874,966 - 46,875,219 (+)MAPPERmRatBN7.2
Rnor_6.01352,268,471 - 52,268,723NCBIRnor6.0
Rnor_5.01357,318,228 - 57,318,481UniSTSRnor5.0
RGSC_v3.41348,447,381 - 48,447,634RGDRGSC3.4
RGSC_v3.41348,447,382 - 48,447,634UniSTSRGSC3.4
Celera1347,194,508 - 47,194,760UniSTS
RGSC_v3.11348,461,425 - 48,461,677RGD
RH 3.4 Map13159.0UniSTS
RH 3.4 Map13159.0RGD
RH 2.0 Map13375.6RGD
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
277 156 730 1590 4060 997 1714 129 860 480 842 156 5358 2578 449 3973 38 1387 731 909 160 158

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011801   ⟹   ENSRNOP00000011801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1349,418,755 - 49,671,004 (-)Ensembl
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)Ensembl
Rnor_6.0 Ensembl1352,267,453 - 52,413,681 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000037100   ⟹   ENSRNOP00000034506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1349,418,755 - 49,615,823 (-)Ensembl
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)Ensembl
Rnor_6.0 Ensembl1352,267,453 - 52,413,681 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000064758   ⟹   ENSRNOP00000059597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1349,418,755 - 49,671,004 (-)Ensembl
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)Ensembl
Rnor_6.0 Ensembl1352,267,254 - 52,514,875 (-)Ensembl
RefSeq Acc Id: NM_001427517   ⟹   NP_001414446
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,671,004 (-)NCBI
Dahl_SR_JrHsd1348,797,981 - 49,051,314 (-)NCBI
Lyon_Normotensive1349,026,372 - 49,278,629 (-)NCBI
Lyon_Hypertensive1348,991,864 - 49,244,122 (-)NCBI
F344_StmMcwi1348,952,419 - 49,205,801 (-)NCBI
RefSeq Acc Id: XM_063272608   ⟹   XP_063128678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,671,116 (-)NCBI
RefSeq Acc Id: XM_063272609   ⟹   XP_063128679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,617,470 (-)NCBI
RefSeq Acc Id: XM_063272610   ⟹   XP_063128680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,671,116 (-)NCBI
RefSeq Acc Id: XM_063272611   ⟹   XP_063128681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,671,117 (-)NCBI
RefSeq Acc Id: XM_063272612   ⟹   XP_063128682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,671,116 (-)NCBI
RefSeq Acc Id: XM_063272613   ⟹   XP_063128683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,671,114 (-)NCBI
RefSeq Acc Id: XM_063272614   ⟹   XP_063128684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,502,049 (-)NCBI
RefSeq Acc Id: XM_063272615   ⟹   XP_063128685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,418,755 - 49,502,049 (-)NCBI
Ensembl Acc Id: ENSRNOP00000011801   ⟸   ENSRNOT00000011801
Ensembl Acc Id: ENSRNOP00000059597   ⟸   ENSRNOT00000064758
Ensembl Acc Id: ENSRNOP00000034506   ⟸   ENSRNOT00000037100
RefSeq Acc Id: XP_063128681   ⟸   XM_063272611
- Peptide Label: isoform X3
- UniProtKB: F1M031 (UniProtKB/TrEMBL),   F1LYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128682   ⟸   XM_063272612
- Peptide Label: isoform X4
- UniProtKB: F1LYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128680   ⟸   XM_063272610
- Peptide Label: isoform X2
- UniProtKB: F1LYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128678   ⟸   XM_063272608
- Peptide Label: isoform X1
- UniProtKB: F1LYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128683   ⟸   XM_063272613
- Peptide Label: isoform X5
- UniProtKB: F1LYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414446   ⟸   NM_001427517
- UniProtKB: F1LYK3 (UniProtKB/TrEMBL),   D4A5I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128679   ⟸   XM_063272609
- Peptide Label: isoform X1
- UniProtKB: F1LYK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128685   ⟸   XM_063272615
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063128684   ⟸   XM_063272614
- Peptide Label: isoform X6
Protein Domains
AAA+ ATPase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5I4-F1-model_v2 AlphaFold D4A5I4 1-2149 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698849
Promoter ID:EPDNEW_R9369
Type:initiation region
Name:Nav1_1
Description:neuron navigator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01352,514,872 - 52,514,932EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590261 AgrOrtholog
BioCyc Gene G2FUF-18205 BioCyc
Ensembl Genes ENSRNOG00000008425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011801 ENTREZGENE
  ENSRNOT00000011801.9 UniProtKB/TrEMBL
  ENSRNOT00000037100 ENTREZGENE
  ENSRNOT00000037100.9 UniProtKB/TrEMBL
  ENSRNOT00000064758 ENTREZGENE
  ENSRNOT00000064758.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  CortBP2_NAV1-like_AAA_lid UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/TrEMBL
  NAV1-like_ubiquitin-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 685707 ENTREZGENE
PANTHER NEURON NAVIGATOR 1 UniProtKB/TrEMBL
  PTHR12784 UniProtKB/TrEMBL
Pfam AAA_lid_NAV1 UniProtKB/TrEMBL
  Ubiquitin_6 UniProtKB/TrEMBL
PhenoGen Nav1 PhenoGen
RatGTEx ENSRNOG00000008425 RatGTEx
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt D4A5I4 ENTREZGENE, UniProtKB/TrEMBL
  F1LYK3 ENTREZGENE, UniProtKB/TrEMBL
  F1M031 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Nav1  neuron navigator 1  LOC685727  similar to neuron navigator 3  Data merged from RGD:1590241 737654 PROVISIONAL
2014-10-03 Nav1  neuron navigator 1  LOC685707  similar to neuron navigator 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685707  similar to neuron navigator 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC685727  similar to neuron navigator 3      Symbol and Name status set to provisional 70820 PROVISIONAL