Nav1 (neuron navigator 1) - Rat Genome Database

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Gene: Nav1 (neuron navigator 1) Heterocephalus glaber
Analyze
Symbol: Nav1
Name: neuron navigator 1
RGD ID: 18913833
Description: ENCODES a protein that exhibits ATP hydrolysis activity (inferred); INVOLVED IN microtubule bundle formation (ortholog); neuron migration (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN axon initial segment (inferred); microtubule cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,196,073 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,945,808 - 9,196,005 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nav1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,196,073 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,945,808 - 9,196,005 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NAV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,539,127 - 201,826,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,539,127 - 201,826,969 (+)EnsemblGRCh38hg38GRCh38
GRCh371201,508,255 - 201,796,097 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,884,073 - 200,061,078 (+)NCBINCBI36Build 36hg18NCBI36
Build 341198,349,106 - 198,526,112NCBI
Celera1174,741,322 - 174,919,920 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,783,272 - 172,961,999 (+)NCBIHuRef
CHM1_11203,039,687 - 203,218,343 (+)NCBICHM1_1
T2T-CHM13v2.01200,796,899 - 201,084,738 (+)NCBIT2T-CHM13v2.0
Nav1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,362,318 - 135,616,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,362,318 - 135,615,843 (-)EnsemblGRCm39 Ensembl
GRCm381135,434,580 - 135,688,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,434,580 - 135,688,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,331,157 - 137,481,932 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,255,284 - 137,402,120 (-)NCBIMGSCv36mm8
Celera1138,063,704 - 138,216,268 (-)NCBICelera
Cytogenetic Map1E4NCBI
Nav1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,418,755 - 49,671,117 (-)NCBIGRCr8
mRatBN7.21346,866,972 - 47,119,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01352,260,474 - 52,515,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,267,254 - 52,514,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,313,875 - 57,563,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,445,809 - 48,592,671 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1347,186,511 - 47,438,045 (-)NCBICelera
Cytogenetic Map13q13NCBI
Nav1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,644,421 - 37,890,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,644,715 - 37,896,759 (+)NCBIChiLan1.0ChiLan1.0
NAV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,555,666 - 47,843,314 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,520,387 - 47,808,069 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,136,609 - 177,424,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,437,978 - 181,725,682 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,547,017 - 181,718,626 (+)Ensemblpanpan1.1panPan2
NAV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,134,208 - 1,305,204 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,140,824 - 1,304,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,184,998 - 1,427,926 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,141,131 - 1,384,404 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,147,319 - 1,310,916 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,129,231 - 1,372,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,237,249 - 1,480,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,261,503 - 1,504,441 (-)NCBIUU_Cfam_GSD_1.0
Nav1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,429,618 - 73,682,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,670,691 - 2,819,826 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,667,377 - 2,917,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,885,798 - 24,102,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,885,721 - 24,104,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,617,901 - 28,633,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,593,875 - 27,872,515 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,594,709 - 27,761,637 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,373,531 - 28,668,885 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015973   ⟹   ENSHGLP00000015808
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,196,073 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015974   ⟹   ENSHGLP00000015809
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,196,073 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015975   ⟹   ENSHGLP00000015810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,106,003 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015976   ⟹   ENSHGLP00000015811
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,106,003 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015977   ⟹   ENSHGLP00000015812
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,106,003 (-)Ensembl
RefSeq Acc Id: XM_004862234   ⟹   XP_004862291
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
RefSeq Acc Id: XM_021242304   ⟹   XP_021097963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
RefSeq Acc Id: XM_021242305   ⟹   XP_021097964
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
RefSeq Acc Id: XM_021242306   ⟹   XP_021097965
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,003 (-)NCBI
RefSeq Acc Id: XM_021242307   ⟹   XP_021097966
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
RefSeq Acc Id: XM_021242308   ⟹   XP_021097967
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,005 (-)NCBI
RefSeq Acc Id: XM_021242310   ⟹   XP_021097969
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
RefSeq Acc Id: XM_021242311   ⟹   XP_021097970
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
RefSeq Acc Id: XM_021242312   ⟹   XP_021097971
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248078,945,808 - 9,196,004 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021097967   ⟸   XM_021242308
- Peptide Label: isoform X6
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097971   ⟸   XM_021242312
- Peptide Label: isoform X9
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097970   ⟸   XM_021242311
- Peptide Label: isoform X8
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097969   ⟸   XM_021242310
- Peptide Label: isoform X7
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097966   ⟸   XM_021242307
- Peptide Label: isoform X5
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862291   ⟸   XM_004862234
- Peptide Label: isoform X3
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097964   ⟸   XM_021242305
- Peptide Label: isoform X2
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097963   ⟸   XM_021242304
- Peptide Label: isoform X1
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097965   ⟸   XM_021242306
- Peptide Label: isoform X4
- UniProtKB: G5B398 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015809   ⟸   ENSHGLT00000015974
RefSeq Acc Id: ENSHGLP00000015811   ⟸   ENSHGLT00000015976
RefSeq Acc Id: ENSHGLP00000015810   ⟸   ENSHGLT00000015975
RefSeq Acc Id: ENSHGLP00000015812   ⟸   ENSHGLT00000015977
RefSeq Acc Id: ENSHGLP00000015808   ⟸   ENSHGLT00000015973


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011311 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015973 ENTREZGENE
  ENSHGLT00000015974 ENTREZGENE
  ENSHGLT00000015975 ENTREZGENE
  ENSHGLT00000015976 ENTREZGENE
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Nav1 ENTREZGENE
PANTHER NEURON NAVIGATOR 1 UniProtKB/TrEMBL
  STEERIN UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt G5B398 ENTREZGENE, UniProtKB/TrEMBL