Nav1 (neuron navigator 1) - Rat Genome Database

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Gene: Nav1 (neuron navigator 1) Mus musculus
Analyze
Symbol: Nav1
Name: neuron navigator 1
RGD ID: 1315591
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity. Acts upstream of or within microtubule bundle formation and neuron migration. Located in axon initial segment and microtubule cytoskeleton. Is expressed in several structures, including central nervous system; embryo mesenchyme; molar; peripheral nervous system ganglion; and sensory organ. Orthologous to human NAV1 (neuron navigator 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9530089B19; 9930003A20Rik; BC028801; C230080M11Rik; cDNA sequence BC028801; Gm38399; mKIAA1151; POM; Pomfil3; pore membrane and/or filament-interacting-like protein 3; steer; steerin-1; Steerin1; unc53H; Unc53h1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,362,318 - 135,616,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,362,318 - 135,615,843 (-)EnsemblGRCm39 Ensembl
GRCm381135,434,580 - 135,688,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,434,580 - 135,688,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,331,157 - 137,481,932 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,255,284 - 137,402,120 (-)NCBIMGSCv36mm8
Celera1138,063,704 - 138,216,268 (-)NCBICelera
Cytogenetic Map1E4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
DDT  (ISO)
deguelin  (ISO)
dexamethasone  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
fenpyroximate  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
inulin  (EXP)
lidocaine  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
morphine  (EXP)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
succimer  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12062803   PMID:12079279   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15158073   PMID:15797708  
PMID:16141072   PMID:16141073   PMID:16944949   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:23341629   PMID:23342162   PMID:24154525   PMID:24316575   PMID:24982181  
PMID:25065758   PMID:26671463   PMID:28671696   PMID:31138677   PMID:32079660   PMID:32497170   PMID:32541003   PMID:34321999   PMID:34708032   PMID:35352947   PMID:36417873   PMID:38172636  


Genomics

Comparative Map Data
Nav1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,362,318 - 135,616,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,362,318 - 135,615,843 (-)EnsemblGRCm39 Ensembl
GRCm381135,434,580 - 135,688,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,434,580 - 135,688,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,331,157 - 137,481,932 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,255,284 - 137,402,120 (-)NCBIMGSCv36mm8
Celera1138,063,704 - 138,216,268 (-)NCBICelera
Cytogenetic Map1E4NCBI
NAV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,539,127 - 201,826,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,539,127 - 201,826,969 (+)EnsemblGRCh38hg38GRCh38
GRCh371201,508,255 - 201,796,097 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,884,073 - 200,061,078 (+)NCBINCBI36Build 36hg18NCBI36
Build 341198,349,106 - 198,526,112NCBI
Celera1174,741,322 - 174,919,920 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,783,272 - 172,961,999 (+)NCBIHuRef
CHM1_11203,039,687 - 203,218,343 (+)NCBICHM1_1
T2T-CHM13v2.01200,796,899 - 201,084,738 (+)NCBIT2T-CHM13v2.0
Nav1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,418,755 - 49,671,117 (-)NCBIGRCr8
mRatBN7.21346,866,972 - 47,119,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,873,689 - 47,126,449 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01352,260,474 - 52,515,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,267,254 - 52,514,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,313,875 - 57,563,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,445,809 - 48,592,671 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1347,186,511 - 47,438,045 (-)NCBICelera
Cytogenetic Map13q13NCBI
Nav1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,644,421 - 37,890,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,644,715 - 37,896,759 (+)NCBIChiLan1.0ChiLan1.0
NAV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,555,666 - 47,843,314 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,520,387 - 47,808,069 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,136,609 - 177,424,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,437,978 - 181,725,682 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,547,017 - 181,718,626 (+)Ensemblpanpan1.1panPan2
NAV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,134,208 - 1,305,204 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,140,824 - 1,304,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,184,998 - 1,427,926 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,141,131 - 1,384,404 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,147,319 - 1,310,916 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,129,231 - 1,372,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,237,249 - 1,480,104 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,261,503 - 1,504,441 (-)NCBIUU_Cfam_GSD_1.0
Nav1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,429,618 - 73,682,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,670,691 - 2,819,826 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,667,377 - 2,917,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,885,798 - 24,102,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,885,721 - 24,104,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,617,901 - 28,633,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,593,875 - 27,872,515 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,594,709 - 27,761,637 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,373,531 - 28,668,885 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nav1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,952,342 - 9,196,073 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,945,808 - 9,196,005 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nav1
8701 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7069
Count of miRNA genes:915
Interacting mature miRNAs:1292
Transcripts:ENSMUST00000040599, ENSMUST00000067414, ENSMUST00000112103
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
13524520Bodwtq1_mbody wweight QTL 1 (mouse)1131191160135621161Mouse
13513913Heal51_mwound healing/ regeneration 51 (mouse)1131780648135499606Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
13504831Bacszq1_mbaculum size QTL 1 (mouse)1134331161148128608Mouse

Markers in Region
M-04311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,440,855 - 135,440,956UniSTSGRCm38
MGSCv371137,337,432 - 137,337,533UniSTSGRCm37
Celera1138,070,171 - 138,070,272UniSTS
Cytogenetic Map1E4UniSTS
Whitehead/MRC_RH11918.53UniSTS
UniSTS:234222  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,441,058 - 135,441,278UniSTSGRCm38
MGSCv371137,337,635 - 137,337,855UniSTSGRCm37
Celera1138,070,374 - 138,070,594UniSTS
Cytogenetic Map1E4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_878320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC016814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF307453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX034555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB523329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN455316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000040599   ⟹   ENSMUSP00000043803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,362,318 - 135,513,093 (-)Ensembl
GRCm38.p6 Ensembl1135,434,580 - 135,585,355 (-)Ensembl
RefSeq Acc Id: ENSMUST00000067414   ⟹   ENSMUSP00000067241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,362,318 - 135,513,443 (-)Ensembl
GRCm38.p6 Ensembl1135,434,580 - 135,585,705 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,534,185 - 135,615,843 (-)Ensembl
GRCm38.p6 Ensembl1135,606,447 - 135,688,105 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,380,113 - 135,381,645 (-)Ensembl
GRCm38.p6 Ensembl1135,452,375 - 135,453,907 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189252   ⟹   ENSMUSP00000141115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,383,054 - 135,395,411 (-)Ensembl
GRCm38.p6 Ensembl1135,455,316 - 135,467,673 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,385,520 - 135,438,122 (-)Ensembl
GRCm38.p6 Ensembl1135,457,782 - 135,510,384 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,386,418 - 135,438,189 (-)Ensembl
GRCm38.p6 Ensembl1135,458,680 - 135,510,451 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190298   ⟹   ENSMUSP00000140322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,366,586 - 135,615,843 (-)Ensembl
GRCm38.p6 Ensembl1135,438,848 - 135,688,105 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,385,520 - 135,388,927 (-)Ensembl
GRCm38.p6 Ensembl1135,457,782 - 135,461,189 (-)Ensembl
RefSeq Acc Id: NM_001427516   ⟹   NP_001414445
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,615,878 (-)NCBI
RefSeq Acc Id: NM_173437   ⟹   NP_775613
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,318 - 135,513,093 (-)NCBI
GRCm381135,434,580 - 135,585,355 (-)NCBI
MGSCv371137,331,157 - 137,481,932 (-)RGD
Celera1138,063,704 - 138,216,268 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529369   ⟹   XP_006529432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529370   ⟹   XP_006529433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,059 (-)NCBI
GRCm381135,434,588 - 135,688,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529371   ⟹   XP_006529434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529372   ⟹   XP_006529435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529373   ⟹   XP_006529436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529375   ⟹   XP_006529438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529376   ⟹   XP_006529439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529377   ⟹   XP_006529440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529378   ⟹   XP_006529441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
GRCm381135,434,588 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529379   ⟹   XP_006529442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,530,995 (-)NCBI
GRCm381135,434,588 - 135,603,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529380   ⟹   XP_006529443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,439,092 (-)NCBI
GRCm381135,434,588 - 135,511,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319805   ⟹   XP_017175294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,586,225 (-)NCBI
GRCm381135,434,588 - 135,658,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319809   ⟹   XP_017175298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,553,078 (-)NCBI
GRCm381135,434,588 - 135,625,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252962   ⟹   XP_030108822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,074 (-)NCBI
GRCm381135,434,588 - 135,688,337 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252963   ⟹   XP_030108823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,082 (-)NCBI
GRCm381135,434,588 - 135,688,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163515   ⟹   XP_036019408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954495
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,380,100 - 135,616,067 (-)NCBI
GRCm381135,452,362 - 135,688,329 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941778
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,362,326 - 135,616,067 (-)NCBI
Sequence:
RefSeq Acc Id: XR_878320
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,380,938 - 135,616,067 (-)NCBI
GRCm381135,453,200 - 135,688,329 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001414445 (Get FASTA)   NCBI Sequence Viewer  
  NP_775613 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529432 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529433 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529434 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529435 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529436 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529438 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529439 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529440 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529441 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529442 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529443 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175294 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175298 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108822 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108823 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019408 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH25914 (Get FASTA)   NCBI Sequence Viewer  
  AAH59840 (Get FASTA)   NCBI Sequence Viewer  
  AAH80292 (Get FASTA)   NCBI Sequence Viewer  
  AAO13290 (Get FASTA)   NCBI Sequence Viewer  
  BAC26198 (Get FASTA)   NCBI Sequence Viewer  
  BAC29566 (Get FASTA)   NCBI Sequence Viewer  
  BAC35323 (Get FASTA)   NCBI Sequence Viewer  
  BAC38568 (Get FASTA)   NCBI Sequence Viewer  
  BAC65740 (Get FASTA)   NCBI Sequence Viewer  
  BAE32163 (Get FASTA)   NCBI Sequence Viewer  
  BAE34329 (Get FASTA)   NCBI Sequence Viewer  
  CAC10125 (Get FASTA)   NCBI Sequence Viewer  
  EDL39576 (Get FASTA)   NCBI Sequence Viewer  
  EDL39577 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000067241
  ENSMUSP00000067241.7
  ENSMUSP00000140322
  ENSMUSP00000140322.3
  ENSMUSP00000141115.2
GenBank Protein Q8CH77 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775613   ⟸   NM_173437
- Peptide Label: isoform 2
- UniProtKB: Q8BKG2 (UniProtKB/Swiss-Prot),   Q80TI7 (UniProtKB/Swiss-Prot),   Q6PB78 (UniProtKB/Swiss-Prot),   Q68EE8 (UniProtKB/Swiss-Prot),   Q3U5B6 (UniProtKB/Swiss-Prot),   Q8BUT5 (UniProtKB/Swiss-Prot),   Q8CH77 (UniProtKB/Swiss-Prot),   A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529440   ⟸   XM_006529377
- Peptide Label: isoform X8
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529439   ⟸   XM_006529376
- Peptide Label: isoform X7
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529438   ⟸   XM_006529375
- Peptide Label: isoform X6
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529433   ⟸   XM_006529370
- Peptide Label: isoform X1
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529436   ⟸   XM_006529373
- Peptide Label: isoform X4
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529435   ⟸   XM_006529372
- Peptide Label: isoform X3
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529434   ⟸   XM_006529371
- Peptide Label: isoform X2
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529432   ⟸   XM_006529369
- Peptide Label: isoform X1
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529441   ⟸   XM_006529378
- Peptide Label: isoform X10
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529442   ⟸   XM_006529379
- Peptide Label: isoform X12
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529443   ⟸   XM_006529380
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017175294   ⟸   XM_017319805
- Peptide Label: isoform X1
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175298   ⟸   XM_017319809
- Peptide Label: isoform X5
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108823   ⟸   XM_030252963
- Peptide Label: isoform X12
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030108822   ⟸   XM_030252962
- Peptide Label: isoform X11
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000043803   ⟸   ENSMUST00000040599
RefSeq Acc Id: ENSMUSP00000067241   ⟸   ENSMUST00000067414
RefSeq Acc Id: ENSMUSP00000140322   ⟸   ENSMUST00000190298
RefSeq Acc Id: ENSMUSP00000141115   ⟸   ENSMUST00000189252
RefSeq Acc Id: XP_036019408   ⟸   XM_036163515
- Peptide Label: isoform X9
- UniProtKB: A0A589P973 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414445   ⟸   NM_001427516
- Peptide Label: isoform 1
Protein Domains
AAA+ ATPase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CH77-F1-model_v2 AlphaFold Q8CH77 1-1875 view protein structure

Promoters
RGD ID:6875064
Promoter ID:EPDNEW_M983
Type:single initiation site
Name:Nav1_3
Description:Mus musculus neuron navigator 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M984  EPDNEW_M985  EPDNEW_M986  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,461,278 - 135,461,338EPDNEW
RGD ID:6875066
Promoter ID:EPDNEW_M984
Type:multiple initiation site
Name:Nav1_1
Description:Mus musculus neuron navigator 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M983  EPDNEW_M985  EPDNEW_M986  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,510,399 - 135,510,459EPDNEW
RGD ID:6875068
Promoter ID:EPDNEW_M985
Type:initiation region
Name:Nav1_2
Description:Mus musculus neuron navigator 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M983  EPDNEW_M984  EPDNEW_M986  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,585,323 - 135,585,383EPDNEW
RGD ID:6875070
Promoter ID:EPDNEW_M986
Type:single initiation site
Name:Nav1_4
Description:Mus musculus neuron navigator 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M983  EPDNEW_M984  EPDNEW_M985  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,607,229 - 135,607,289EPDNEW
RGD ID:6875072
Promoter ID:EPDNEW_M987
Type:initiation region
Name:AK158038_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,688,105 - 135,688,165EPDNEW
RGD ID:6817416
Promoter ID:MM_KWN:2204
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:AK163071_BC028801
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361137,332,061 - 137,333,712 (-)MPROMDB
RGD ID:6846627
Promoter ID:MM_ACW:2462
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NAV1.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361137,367,006 - 137,367,506 (-)MPROMDB
RGD ID:6818143
Promoter ID:MM_KWN:2207
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:UC007CTL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361137,406,774 - 137,407,274 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2183683 AgrOrtholog
Ensembl Genes ENSMUSG00000009418 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000067414 ENTREZGENE
  ENSMUST00000067414.13 UniProtKB/Swiss-Prot
  ENSMUST00000189252.2 UniProtKB/TrEMBL
  ENSMUST00000190298 ENTREZGENE
  ENSMUST00000190298.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:215690 UniProtKB/Swiss-Prot
MGD MGI:2183683 ENTREZGENE
NCBI Gene 215690 ENTREZGENE
PANTHER NEURON NAVIGATOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nav1 PhenoGen
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WSM9_MOUSE UniProtKB/TrEMBL
  A0A589P973 ENTREZGENE, UniProtKB/TrEMBL
  NAV1_MOUSE UniProtKB/Swiss-Prot
  Q3U5B6 ENTREZGENE
  Q68EE8 ENTREZGENE
  Q6PB78 ENTREZGENE
  Q80TI7 ENTREZGENE
  Q8BKG2 ENTREZGENE
  Q8BUT5 ENTREZGENE
  Q8CB55_MOUSE UniProtKB/TrEMBL
  Q8CE65_MOUSE UniProtKB/TrEMBL
  Q8CH77 ENTREZGENE
  Q8K1B1_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3U5B6 UniProtKB/Swiss-Prot
  Q68EE8 UniProtKB/Swiss-Prot
  Q6PB78 UniProtKB/Swiss-Prot
  Q80TI7 UniProtKB/Swiss-Prot
  Q8BKG2 UniProtKB/Swiss-Prot
  Q8BUT5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-27 Nav1  neuron navigator 1  BC028801  cDNA sequence BC028801  Data merged from RGD:1607634 737654 PROVISIONAL