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Gene: Fzd6 (frizzled class receptor 6) Rattus norvegicus

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Symbol:

Fzd6

Name:

frizzled class receptor 6

RGD ID:

628816

Description:

Predicted to enable Wnt receptor activity; Wnt-protein binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cell proliferation in midbrain; embryonic morphogenesis; and establishment of body hair planar orientation. Predicted to be located in apical plasma membrane; apicolateral plasma membrane; and endoplasmic reticulum membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in nonsyndromic congenital nail disorder 1. Orthologous to human FZD6 (frizzled class receptor 6); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, non-canonical pathway; Wnt signaling, the planar cell polarity pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

frizzled family receptor 6; frizzled homolog 6; frizzled homolog 6 (Drosophila); frizzled-6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FZD6 (frizzled class receptor 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Fzd6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fzd6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FZD6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FZD6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fzd6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FZD6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FZD6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fzd6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fzd6 (frizzled class receptor 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MRPL23 (mitochondrial ribosomal protein L23)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	FZD6 (frizzled class receptor 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fzd6 (frizzled class receptor 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fzd6 (frizzled class receptor 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mom-5	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mom-5	Alliance	DIOPT (Hieranoid\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fzd6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fzd6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	71,939,916 - 71,971,685 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	71,939,973 - 71,971,680 (+)	Ensembl				GRCr8
mRatBN7.2	7	70,055,012 - 70,086,781 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	70,055,068 - 70,086,776 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	71,928,131 - 71,959,724 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	74,130,707 - 74,162,300 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	73,998,735 - 74,030,325 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	77,898,329 - 77,931,034 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	77,899,322 - 77,931,029 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	78,317,818 - 78,349,530 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	74,562,307 - 74,594,014 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	67,111,454 - 67,143,157 (+)	NCBI		Celera
RGSC_v3.1	7	74,608,138 - 74,610,532 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Hydrops Fetalis (ISO)

nail disease (ISO)

nephroblastoma (ISO)

nonsyndromic congenital nail disorder 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

Azoxymethane (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[ghi]perylene (ISO)

beta-carotene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP)

cocaine (EXP)

coumarin (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

diazinon (EXP)

dibenz[a,h]anthracene (ISO)

dichloroacetic acid (ISO)

diclofenac (ISO)

dicrotophos (ISO)

dieldrin (EXP)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

FR900359 (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glycidol (EXP)

glyphosate (EXP,ISO)

hydrogen peroxide (ISO)

imidacloprid (EXP)

iron dichloride (ISO)

lithium chloride (ISO)

methylmercury chloride (ISO)

mifepristone (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (EXP)

nickel sulfate (ISO)

paracetamol (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

raloxifene (ISO)

retinyl acetate (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trichloroethene (EXP,ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

canonical Wnt signaling pathway (IBA)

cell proliferation in midbrain (IEA,ISO)

cell surface receptor signaling pathway (IEA)

embryonic nail plate morphogenesis (ISO)

establishment of body hair planar orientation (ISO)

establishment of planar polarity (IEA,ISO)

G protein-coupled receptor signaling pathway (IEA)

hair follicle development (IEA,ISO)

inner ear morphogenesis (IEA,ISO)

midbrain development (ISO)

negative regulation of canonical Wnt signaling pathway (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

neural tube closure (IEA,ISO)

non-canonical Wnt signaling pathway (IBA,IEA,ISO)

platelet activation (ISO)

signal transduction (IEA)

Wnt signaling pathway (IEA)

Wnt signaling pathway, planar cell polarity pathway (IEA,ISO)

Cellular Component

apical part of cell (IEA,ISO)

apical plasma membrane (IEA,ISO)

apicolateral plasma membrane (IEA,ISO)

cell surface (IEA)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

endoplasmic reticulum membrane (IEA,ISO)

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

Molecular Function

G protein-coupled receptor activity (IEA)

protein binding (ISO)

transmembrane signaling receptor activity (IEA)

ubiquitin protein ligase binding (IEA,ISO)

Wnt receptor activity (IBA,IEA,ISO)

Wnt-protein binding (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

basal cell carcinoma pathway (IEA)

Wnt signaling pathway (IEA,ISO)

Wnt signaling, non-canonical pathway (ISO)

Wnt signaling, the planar cell polarity pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	The human Frizzled 6 (HFz6) acts as a negative regulator of the canonical Wnt. beta-catenin signaling cascade.	Golan T, etal., J Biol Chem 2004 Apr 9;279(15):14879-88. Epub 2004 Jan 27.
4.	Planar cell polarity signaling in vertebrates.	Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	The Wnt Homepage	Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA

Additional References at PubMed

PMID:10347172	PMID:12399112	PMID:15169958	PMID:15265686	PMID:16495441	PMID:17172440	PMID:17376975	PMID:18606138	PMID:19842188	PMID:19901330	PMID:22575959	PMID:23439395
PMID:26418459	PMID:31073040	PMID:38710294

Genomics

Comparative Map Data

Fzd6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	71,939,916 - 71,971,685 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	71,939,973 - 71,971,680 (+)	Ensembl				GRCr8
mRatBN7.2	7	70,055,012 - 70,086,781 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	70,055,068 - 70,086,776 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	71,928,131 - 71,959,724 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	74,130,707 - 74,162,300 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	73,998,735 - 74,030,325 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	77,898,329 - 77,931,034 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	77,899,322 - 77,931,029 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	78,317,818 - 78,349,530 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	74,562,307 - 74,594,014 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	67,111,454 - 67,143,157 (+)	NCBI		Celera
RGSC_v3.1	7	74,608,138 - 74,610,532 (+)	NCBI
Cytogenetic Map	7	q22	NCBI

FZD6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	103,298,494 - 103,332,866 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	103,298,433 - 103,332,866 (+)	Ensembl			hg38	GRCh38
GRCh37	8	104,310,722 - 104,345,094 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	104,380,276 - 104,414,270 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	104,380,275 - 104,414,268	NCBI
Celera	8	100,497,508 - 100,531,944 (+)	NCBI		Celera
Cytogenetic Map	8	q22.3	NCBI
HuRef	8	99,511,909 - 99,546,152 (+)	NCBI		HuRef
CHM1_1	8	104,351,658 - 104,386,105 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	104,426,440 - 104,460,824 (+)	NCBI		T2T-CHM13v2.0

Fzd6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	38,869,673 - 38,901,587 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	38,869,429 - 38,901,583 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	39,006,149 - 39,038,192 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	39,006,034 - 39,038,188 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	38,837,826 - 38,869,738 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	38,836,426 - 38,868,266 (+)	NCBI		MGSCv36	mm8
Celera	15	39,491,330 - 39,523,038 (+)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI
cM Map	15	15.22	NCBI

Fzd6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	27,465,701 - 27,494,790 (+)	Ensembl
ChiLan1.0	NW_004955417	27,465,730 - 27,493,752 (+)	NCBI	ChiLan1.0	ChiLan1.0

FZD6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	120,665,197 - 120,699,444 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	96,201,109 - 96,235,336 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	99,954,523 - 99,989,153 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	102,110,317 - 102,144,363 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	102,110,317 - 102,144,363 (+)	Ensembl			panPan2	panpan1.1

FZD6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	4,732,541 - 4,771,294 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	4,733,017 - 4,772,115 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	4,736,685 - 4,774,802 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	4,896,006 - 4,936,859 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	4,896,040 - 4,936,854 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	4,737,532 - 4,775,876 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	4,855,495 - 4,893,845 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	4,868,139 - 4,906,505 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fzd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	32,990,184 - 33,027,935 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	40,416,014 - 40,454,062 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	40,416,254 - 40,454,717 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FZD6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	33,809,809 - 33,844,656 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	33,811,159 - 33,844,556 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	36,662,301 - 36,697,139 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FZD6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	98,154,173 - 98,187,864 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	98,154,196 - 98,188,069 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	42,412,469 - 42,446,650 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fzd6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624763	19,861,837 - 19,888,626 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fzd6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	212,144,393 - 212,174,816 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fzd6
169 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	188
Count of miRNA genes:	149
Interacting mature miRNAs:	163
Transcripts:	ENSRNOT00000006195
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	71103011	106126789	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH128010

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	70,086,349 - 70,086,532 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	77,930,603 - 77,930,785	NCBI	Rnor6.0
Rnor_5.0	7	78,318,067 - 78,318,249	UniSTS	Rnor5.0
RGSC_v3.4	7	74,593,588 - 74,593,770	UniSTS	RGSC3.4
Celera	7	67,142,731 - 67,142,913	UniSTS
Cytogenetic Map	7	q22	UniSTS

Fzd6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	98,100,874 - 98,100,975 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	102,478,321 - 102,478,421	NCBI	Rnor6.0
Rnor_5.0	6	115,164,269 - 115,164,369	UniSTS	Rnor5.0
RGSC_v3.4	6	102,071,084 - 102,071,184	UniSTS	RGSC3.4
Celera	6	96,485,919 - 96,486,019	UniSTS
Cytogenetic Map	6	q24	UniSTS
Cytogenetic Map	7	q22	UniSTS

Fzd6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	70,080,140 - 70,080,340 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	77,924,394 - 77,924,593	NCBI	Rnor6.0
Rnor_5.0	7	78,324,259 - 78,324,458	UniSTS	Rnor5.0
RGSC_v3.4	7	74,587,379 - 74,587,578	UniSTS	RGSC3.4
Celera	7	67,136,522 - 67,136,721	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	55	59	6	319	155	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC126589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF481948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006195 ⟹ ENSRNOP00000006195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	71,939,973 - 71,971,680 (+)	Ensembl
mRatBN7.2 Ensembl	7	70,055,068 - 70,086,776 (+)	Ensembl
Rnor_6.0 Ensembl	7	77,899,322 - 77,931,029 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125394 ⟹ ENSRNOP00000104505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	71,958,649 - 71,971,680 (+)	Ensembl

RefSeq Acc Id:

NM_001130536 ⟹ NP_001124008

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,939,973 - 71,971,680 (+)	NCBI
mRatBN7.2	7	70,055,068 - 70,086,776 (+)	NCBI
Rnor_6.0	7	77,899,322 - 77,931,029 (+)	NCBI
Rnor_5.0	7	78,317,818 - 78,349,530 (-)	NCBI
RGSC_v3.4	7	74,562,307 - 74,594,014 (+)	RGD
Celera	7	67,111,454 - 67,143,157 (+)	RGD

Sequence:

show sequence

CCGGCTGCCGGCACGCCGGGGCTGTCTGAAGTGGCGGGGCCGATCGACGCCAGAGACAGCCGCC
ACCGCCCCCGCCGCCCGAGGTGAGGCGTCCCCGGCCCGACGGGGCGGGCGGGCAGCGGCCGGGA
CCCGAGCCGCAGCAGTTGTCCCAGAACTCATTTTCAGGAAACGGCTTCTTTCAAAATGGTAAAA
ATAATGAAATGAGGAATTTGTCCATTTTATCTCCAATTTGAGAATCTTTTGATGCGGAAAGGAG
CATAAGAGTAATCCAAGCCATGTGGTAATCGGAGTCTGGGGAAGATGGAAGCGTCCCCGTTTCT
GTCGGCCTGCATTCTTCTGCCCCTCATAAGAGGGCACAGCCTTTTCACCTGTGAGCCAATCACT
GTTCCCAGATGTATGAAAATGGCCTACAACATGACGTTTTTCCCTAACCTGATGGGTCATTATG
ACCAGGGCATTGCTGCTGTGGAAATGGAGCACTTTCTGCCTCTTGCAAATCTGGAATGTTCACC
AAACATTGAAATGTTTCTTTGCCAAGCTTTTGTACCAACCTGCACAGAGCAAATTGATGTGGTT
TCACCTTGTCGGAAATTGTGTGAGAAAATACTTTCTGATTGCCAAAAGTTAATGGACACTTTTG
GGATCCGATGGCCTGAAGAACTTGAATGTCACAGATTGCCGTACTGTGATGGCGCTGTTCCTGT
TACTTCTGATCCACACACAGAGCTTTTTGGTCCACAGAAGAAAACAGATCAAGTCCCAAGGGAC
ATTGGATTTTGGTGTCCAAAGCACCTTAGGACTTCCGGGGACCAAGGCTATAGGTTTCTGGGAA
TTGACCAGTGTGCCCCTCCGTGTCCTAACATGTACTTTAAAAGTGATGAACTAGACTTTGCCAA
AAGTTTCATAGGAATAGTTTCAATATTTTGTCTTTGTGCAACTTTGTTCACGTTTCTTACTTTT
TTAATTGACGTCAGAAGATTCAGGTACCCAGAGAGACCAATTATATACTACTCCGTCTGTTACA
GCATCGTCTCTCTCATGTACTTTGTTGGGTTTTTGCTGGGCAATAGCACAGCTTGTAATAAGGC
AGATGAGAAGCTGGAACTCGGGAACACAGTCGTTCTAGGGTCAAAGAATAAGGCTTGCAGCGTG
GTGTTTATGTTTCTGTACTTTTTCACAATGGCCGGCACCGTGTGGTGGGTGATCCTCACCATTA
CGTGGTTCTTAGCCGCCGGAAGAAAATGGAGTTGCGAAGCTATTGAACAAAAAGCAGTGTGGTT
TCACGCCGTTGCCTGGGGGATGCCCGGGTTCCTGACTGTCATGCTGCTCGCTATGAACAAGGTT
GAAGGAGACAACATTAGCGGCGTTTGCTTCGTTGGCCTGTATGACTTAGATGCCTCCCGCTACT
TCGTCCTTCTGCCTCTGTGCCTCTGTGTGTTTGTTGGGCTGTCTCTCCTCTTAGCTGGCATCAT
TTCCTTAAATCACGTTCGACAAGTTATACAACATGATGGCCGAAACCAAGAGAAGCTCAAGAAG
TTCATGATCCGCATTGGAGTCTTCAGTGGCCTGTATCTTGTGCCCTTAGTGACGCTTCTTGGCT
GCTATGTCTATGAGCTAGTGAACAGGGTCACCTGGGAGATGACGTGGTTCTCTGATCACTGTCA
CCAGTACCGCATCCCGTGTCCTTACCAGGCAAACCCAAAAGCTCGACCAGAATTGGCTTTATTT
ATGATAAAATATCTGATGACATTAATTGTTGGTATCTCTGCGGTCTTCTGGGTTGGAAGCAAAA
AGACGTGCACAGAATGGGCCGGGTTCTGTAAGCGAAACCGCAAGCGCGACCCCATCAGTGAGAG
CCGAAGAGTGCTGCAAGAGTCCTGTGAGTTCTTCCTGAAGCACAATTCCAAAGTGAGGCACAAG
AAGAAGCATGGCAAACCAGGCTCACATAAACTGAAGGTCATTTCCAAGTCCATGGGAACTAGCA
CGGGCGTGACCACAGACCATGGCACCTCTGCCGTAGCAATTGCCGACCATGATTACTTAGGGCA
GGAAACTTCAGCAGAAGTCCAGACCTCCCCAGAAGCATCCCTGAAAGAGGGGAGAGCAGACCGA
GCAAACACGCCCAGAGCCAAAGGTCCAGACTGTGGAGAACCTGCTTCCACAGCAGCGTCCAACT
CCAAGTTCTCTGGGGACCAGATCGACAGGAAAAGCCGAGCAGGCAGCGTGAAGGAGAAAAGCAG
CGTATCGGAAGGGGCTCCAAGTGAAGGAAGGGTAAGTCCAAAGGGCGTTCCTGGGACTGGCCTG
ATGGAGTGCACTTTACAGATCCCCAGCTCTCCAGAACCAAACAGCCTCAAAGGTTCCACATCTC
TGCTTGTTCGCTCAGCTTCCGGAACTAGGAAAGAGCAGGGTGCTGGCGGCCATTCTGATACTTG
AAGAAAACTGTCTCTACCCCGGGAGCTGTACACTACACTGGAGACGACCTTGTCTTATAAAAGA
ACACTGTGGAGCTGGGAGTTGCCCAGTGGCAGAGTGCTCACCTGGGATACTTGAGGACCTGGGT
TTACCTCTCAGCACAGCAGAAAGAGAGTTCACTGTTGCCGTCTTCCATGCACTTAAGCCAGCTT
TGTCTACTGGTTTTTTTGGCTTGGCTTTTATTTTTGTTGCTTTTATTTTTGTTGTTGTTGTTGT
TCGTTTGTTTGTTTGTTTGTTTGATTCAGGGTTTCTTTGTGAGCCCTGGCTGTCCTGGAACTCC
CTCTGTAGACCAGGCTAGCCTCAAAGTTCCAGAGATTCGCCTGCCTCTGCCTCCCGGGTGCTGG
GAATAATGGTGTGGCTACCACCGCCCAGCCTTTTGTCTACTGTTAAACTGGAAAGAAACAACAG
CCCAGATTTCAAAAATAATATAATGCATTTATACCTAAAAAAAAGGAATGTCCAGGTTAATAAT
ATTTTTTAAATGTGGGGGTAGGAAGGGCATTAGAAATTTCCTTCTGTTTATGAAGATTCTTTCA
TTAAAGTATTTAAGATATTTTATGCTGTTTCACTCTTTTTTTTTTTTTTTTTTTTTGGTTCGTT
TTTTTCGGAGCTGGAGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAG
CTAAAGCCCCAGCCCCTTGTTTCACTCTTTTGATATAAATTCAGGATTTTTCTTTGCTGAAGTA
TTTAAAACTTATCATTGAACCTTTATATGTAGATACATAAGTATTTGAACTTTTTTGAAAATCC
TAGAAAATTGAATCAAATATGTTTATGATGTTTTTAATATTTTGGCTACTTTGCAACTATGGTA
GCTGTTACACTGGATTCTAAGGAGCTTACGCAGCAGCCTCTCTCCAGTAACGGAGTAGGTGTCA
CACTGAAAGGTTTGTAAGAAGCGCTCAGCTCTCAGAGCCGCTCTTGCCTTCCCTGGACTGAGGA
ACTTGCTGACAGTCTCTCCCAAGTGTATGGTCCCTTTCCTCCTGCGTGTTCGCAAATTAGCAGG
TGAGATGTTAGTTCTTTACAAATTAGGCCACTCTGTTTATTTCCTTTTTGTTTTAAGTGTTTCA
TGACCACTCAAGATTGAATTATGGCCATTTTTAATGGCTCGTGCCTGTTTTATTTTATCTTACT
CTTCTATTTTCTGAGACAGGGTCTCACTGTCGCTCTCCTTGGCTGTCTGGTGCTCAGTGAGACT
TCGCACATCACAGAGGTCCACCCTCTGCAGTTCACTCATCTCCCAAGTGCTGGGGTTAAAGGCT
TGAACCACCACACTCAGCTTTTATCTTTTTTAAAAAATTTAAACTTAAAAAATGTTTTTAGAAT
GCTACAGACACATTGTGTTGTATCTTTCTTAGACAGTTTACAAAATTCCTATCTGCAGCTAAAC
CTGATAAAGAAAATGTGCTGAGGACAGAGTGGGGCAGGGAGAGTGTAGTGTAGCAAATACAGTG
TGAAAAGACACTTAAAGTGCTAAGAGAGTTTCTTAATGTTGTTTCTCCCCAAGTATTATCTCTG
CAGCAAGGTTCTCTTGGCTACCTTGAGCCTGTTGGACCCCTGTTAAAGTTTAAAATGAAAGTTA
TCATGTACTGTATGGAAAATGTAAATACTAACTTTTCCACAAATGTAAACTTTGGACACAAGAA
CTTTTTTGTGTGATCTTTTCATCAATAAAATTTTCTTTGTAT

hide sequence

RefSeq Acc Id:

XM_017594684 ⟹ XP_017450173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,939,916 - 71,971,685 (+)	NCBI
mRatBN7.2	7	70,055,012 - 70,086,781 (+)	NCBI
Rnor_6.0	7	77,898,329 - 77,931,034 (+)	NCBI

Sequence:

show sequence

CCTGAGTGCTGGGATTGACGGTGTGCACTACCACGACCACCATCTGGTCCTAAGCTTTTTGATA
AAGCTGGGATAATTCTCCAAAATCCATCTTCATTTTGATGTTTGCAGATGTCAAATATTGTCTG
GTTATTGTTGGGGTCCCAAGTTCTGACATGTGATATTTTTCTGCAGTACAGAGAATCGGCTAAT
AACAGTCTCTATTTAAAAGTTATTTTACAGGATGGAACTGTAACTTAACACACTAAGCATGCTA
TCACCACGATGCACAAGGACCTGGGTTCTAGACCCGTTAGGAACAAGAAGAAAAGTTACTTATT
TCTCCTGTGCCAAGGTGTAAGTTCGTTTGTACCTCATACCAGAGTCCTACGGATTAGGCATTAT
TGAATGTAAAGGACTCAAAAGTTAGTAACCATTATCGTATGCATTTCTCATGTCTACATACTGA
GGACTCTAAGCATCTACACACCCCTTTTAGGTAATTTATCTGAAATGATGATGGCAGAGCTGGT
TCTCAAAACCACGTTGACTAAAGCAGTTAACTTTCTGTGGGGCTTTTGTAGCACTAAAGTTGCA
GAACCAGCCGAAGCTGGAATTCCACTGGCACCTGCCGTTCAAGGTGGTGGCCAGACTCTCGGAG
TTAATAGGCTTTTCCGCCAAGAGCTCAGGAAGTTACTCGCTAACCCCTGTCCCGGCGACAAGTC
ACTACAGAGCAGATCCCCGCGGCTAAGGCTCCTCGCTTCCAGAACCGAGTGTGCTCTGCAGGGC
GCTTTCCCTAAGGCCCAGGACGGACGCCTGGGTCCGCTGTGCGAACGGAGGCGAGGGCTCGTCC
GCCCCCGCACCACGCCTGGCTGGGCTGGGCGGGGCACAGGGCCGGTCCCGCCGCCGCGAGCCCC
AACCTGCCCGCCCGACCTGGCGGCGCAGTCTCGCGGGATCGCCCAGCTCTCGCTCCCCGTGCGG
CCCCGGAGGCGGTCGAAGCTCGGACGCTGCCCCCCGGCTGCCGGCACGCCGGGGCTGTCTGAAG
TGGCGGGGCCGATCGACGCCAGAGACAGCCGCCACCGCCCCCGCCGCCCGAGCAGTTGTCCCAG
AACTCATTTTCAGGAAACGGCTTCTTTCAAAATGGTAAAAATAATGAAATGAGGAATTTGTCCA
TTTTATCTCCAATTTGAGAATCTTTTGATGCGGAAAGGAGCATAAGAGTAATCCAAGCCATGTG
GTAATCGGAGTCTGGGGAAGATGGAAGCGTCCCCGTTTCTGTCGGCCTGCATTCTTCTGCCCCT
CATAAGAGGGCACAGCCTTTTCACCTGTGAGCCAATCACTGTTCCCAGATGTATGAAAATGGCC
TACAACATGACGTTTTTCCCTAACCTGATGGGTCATTATGACCAGGGCATTGCTGCTGTGGAAA
TGGAGCACTTTCTGCCTCTTGCAAATCTGGAATGTTCACCAAACATTGAAATGTTTCTTTGCCA
AGCTTTTGTACCAACCTGCACAGAGCAAATTGATGTGGTTTCACCTTGTCGGAAATTGTGTGAG
AAAATACTTTCTGATTGCCAAAAGTTAATGGACACTTTTGGGATCCGATGGCCTGAAGAACTTG
AATGTCACAGATTGCCGTACTGTGATGGCGCTGTTCCTGTTACTTCTGATCCACACACAGAGCT
TTTTGGTCCACAGAAGAAAACAGATCAAGTCCCAAGGGACATTGGATTTTGGTGTCCAAAGCAC
CTTAGGACTTCCGGGGACCAAGGCTATAGGTTTCTGGGAATTGACCAGTGTGCCCCTCCGTGTC
CTAACATGTACTTTAAAAGTGATGAACTAGACTTTGCCAAAAGTTTCATAGGAATAGTTTCAAT
ATTTTGTCTTTGTGCAACTTTGTTCACGTTTCTTACTTTTTTAATTGACGTCAGAAGATTCAGG
TACCCAGAGAGACCAATTATATACTACTCCGTCTGTTACAGCATCGTCTCTCTCATGTACTTTG
TTGGGTTTTTGCTGGGCAATAGCACAGCTTGTAATAAGGCAGATGAGAAGCTGGAACTCGGGAA
CACAGTCGTTCTAGGGTCAAAGAATAAGGCTTGCAGCGTGGTGTTTATGTTTCTGTACTTTTTC
ACAATGGCCGGCACCGTGTGGTGGGTGATCCTCACCATTACGTGGTTCTTAGCCGCCGGAAGAA
AATGGAGTTGCGAAGCTATTGAACAAAAAGCAGTGTGGTTTCACGCCGTTGCCTGGGGGATGCC
CGGGTTCCTGACTGTCATGCTGCTCGCTATGAACAAGGTTGAAGGAGACAACATTAGCGGCGTT
TGCTTCGTTGGCCTGTATGACTTAGATGCCTCCCGCTACTTCGTCCTTCTGCCTCTGTGCCTCT
GTGTGTTTGTTGGGCTGTCTCTCCTCTTAGCTGGCATCATTTCCTTAAATCACGTTCGACAAGT
TATACAACATGATGGCCGAAACCAAGAGAAGCTCAAGAAGTTCATGATCCGCATTGGAGTCTTC
AGTGGCCTGTATCTTGTGCCCTTAGTGACGCTTCTTGGCTGCTATGTCTATGAGCTAGTGAACA
GGGTCACCTGGGAGATGACGTGGTTCTCTGATCACTGTCACCAGTACCGCATCCCGTGTCCTTA
CCAGGCAAACCCAAAAGCTCGACCAGAATTGGCTTTATTTATGATAAAATATCTGATGACATTA
ATTGTTGGTATCTCTGCGGTCTTCTGGGTTGGAAGCAAAAAGACGTGCACAGAATGGGCCGGGT
TCTGTAAGCGAAACCGCAAGCGCGACCCCATCAGTGAGAGCCGAAGAGTGCTGCAAGAGTCCTG
TGAGTTCTTCCTGAAGCACAATTCCAAAGTGAGGCACAAGAAGAAGCATGGCAAACCAGGCTCA
CATAAACTGAAGGTCATTTCCAAGTCCATGGGAACTAGCACGGGCGTGACCACAGACCATGGCA
CCTCTGCCGTAGCAATTGCCGACCATGATTACTTAGGGCAGGAAACTTCAGCAGAAGTCCAGAC
CTCCCCAGAAGCATCCCTGAAAGAGGGGAGAGCAGACCGAGCAAACACGCCCAGAGCCAAAGGT
CCAGACTGTGGAGAACCTGCTTCCACAGCAGCGTCCAACTCCAAGTTCTCTGGGGACCAGATCG
ACAGGAAAAGCCGAGCAGGCAGCGTGAAGGAGAAAAGCAGCGTATCGGAAGGGGCTCCAAGTGA
AGGAAGGGTAAGTCCAAAGGGCGTTCCTGGGACTGGCCTGATGGAGTGCACTTTACAGATCCCC
AGCTCTCCAGAACCAAACAGCCTCAAAGGTTCCACATCTCTGCTTGTTCGCTCAGCTTCCGGAA
CTAGGAAAGAGCAGGGTGCTGGCGGCCATTCTGATACTTGAAGAAAACTGTCTCTACCCCGGGA
GCTGTACACTACACTGGAGACGACCTTGTCTTATAAAAGAACACTGTGGAGCTGGGAGTTGCCC
AGTGGCAGAGTGCTCACCTGGGATACTTGAGGACCTGGGTTTACCTCTCAGCACAGCAGAAAGA
GAGTTCACTGTTGCCGTCTTCCATGCACTTAAGCCAGCTTTGTCTACTGGTTTTTTTGGCTTGG
CTTTTATTTTTGTTGCTTTTATTTTTGTTGTTGTTGTTGTTCGTTTGTTTGTTTGTTTGTTTGA
TTCAGGGTTTCTTTGTGAGCCCTGGCTGTCCTGGAACTCCCTCTGTAGACCAGGCTAGCCTCAA
AGTTCCAGAGATTCGCCTGCCTCTGCCTCCCGGGTGCTGGGAATAATGGTGTGGCTACCACCGC
CCAGCCTTTTGTCTACTGTTAAACTGGAAAGAAACAACAGCCCAGATTTCAAAAATAATATAAT
GCATTTATACCTAAAAAAAAGGAATGTCCAGGTTAATAATATTTTTTAAATGTGGGGGTAGGAA
GGGCATTAGAAATTTCCTTCTGTTTATGAAGATTCTTTCATTAAAGTATTTAAGATATTTTATG
CTGTTTCACTCTTTTTTTTTTTTTTTTTTTTTGGTTCGTTTTTTTCGGAGCTGGAGACCGAACC
CAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAAGCCCCAGCCCCTTGTTTCA
CTCTTTTGATATAAATTCAGGATTTTTCTTTGCTGAAGTATTTAAAACTTATCATTGAACCTTT
ATATGTAGATACATAAGTATTTGAACTTTTTTGAAAATCCTAGAAAATTGAATCAAATATGTTT
ATGATGTTTTTAATATTTTGGCTACTTTGCAACTATGGTAGCTGTTACACTGGATTCTAAGGAG
CTTACGCAGCAGCCTCTCTCCAGTAACGGAGTAGGTGTCACACTGAAAGGTTTGTAAGAAGCGC
TCAGCTCTCAGAGCCGCTCTTGCCTTCCCTGGACTGAGGAACTTGCTGACAGTCTCTCCCAAGT
GTATGGTCCCTTTCCTCCTGCGTGTTCGCAAATTAGCAGGTGAGATGTTAGTTCTTTACAAATT
AGGCCACTCTGTTTATTTCCTTTTTGTTTTAAGTGTTTCATGACCACTCAAGATTGAATTATGG
CCATTTTTAATGGCTCGTGCCTGTTTTATTTTATCTTACTCTTCTATTTTCTGAGACAGGGTCT
CACTGTCGCTCTCCTTGGCTGTCTGGTGCTCAGTGAGACTTCGCACATCACAGAGGTCCACCCT
CTGCAGTTCACTCATCTCCCAAGTGCTGGGGTTAAAGGCTTGAACCACCACACTCAGCTTTTAT
CTTTTTTAAAAAATTTAAACTTAAAAAATGTTTTTAGAATGCTACAGACACATTGTGTTGTATC
TTTCTTAGACAGTTTACAAAATTCCTATCTGCAGCTAAACCTGATAAAGAAAATGTGCTGAGGA
CAGAGTGGGGCAGGGAGAGTGTAGTGTAGCAAATACAGTGTGAAAAGACACTTAAAGTGCTAAG
AGAGTTTCTTAATGTTGTTTCTCCCCAAGTATTATCTCTGCAGCAAGGTTCTCTTGGCTACCTT
GAGCCTGTTGGACCCCTGTTAAAGTTTAAAATGAAAGTTATCATGTACTGTATGGAAAATGTAA
ATACTAACTTTTCCACAAATGTAAACTTTGGACACAAGAACTTTTTTGTGTGATCTTTTCATCA
ATAAAATTTTCTTTGTATAAAAA

hide sequence

RefSeq Acc Id:

XM_017594686 ⟹ XP_017450175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,940,090 - 71,971,685 (+)	NCBI
mRatBN7.2	7	70,055,176 - 70,086,781 (+)	NCBI
Rnor_6.0	7	77,899,468 - 77,931,034 (+)	NCBI

Sequence:

show sequence

CGCCTTGGAGTCCCACGCAACTCCTGGGAAGTGACTCCGGGTCCCCGTAGGCCCGGGACGCTGC
CGCTCAGCTGCAGGCCTGGAACAGCAGTTGTCCCAGAACTCATTTTCAGGAAACGGCTTCTTTC
AAAATGGTAAAAATAATGAAATGAGGAATTTGTCCATTTTATCTCCAATTTGAGAATCTTTTGA
TGCGGAAAGGAGCATAAGAGTAATCCAAGCCATGTGGTAATCGGAGTCTGGGGAAGATGGAAGC
GTCCCCGTTTCTGTCGGCCTGCATTCTTCTGCCCCTCATAAGAGGGCACAGCCTTTTCACCTGT
GAGCCAATCACTGTTCCCAGATGTATGAAAATGGCCTACAACATGACGTTTTTCCCTAACCTGA
TGGGTCATTATGACCAGGGCATTGCTGCTGTGGAAATGGAGCACTTTCTGCCTCTTGCAAATCT
GGAATGTTCACCAAACATTGAAATGTTTCTTTGCCAAGCTTTTGTACCAACCTGCACAGAGCAA
ATTGATGTGGTTTCACCTTGTCGGAAATTGTGTGAGAAAATACTTTCTGATTGCCAAAAGTTAA
TGGACACTTTTGGGATCCGATGGCCTGAAGAACTTGAATGTCACAGATTGCCGTACTGTGATGG
CGCTGTTCCTGTTACTTCTGATCCACACACAGAGCTTTTTGGTCCACAGAAGAAAACAGATCAA
GTCCCAAGGGACATTGGATTTTGGTGTCCAAAGCACCTTAGGACTTCCGGGGACCAAGGCTATA
GGTTTCTGGGAATTGACCAGTGTGCCCCTCCGTGTCCTAACATGTACTTTAAAAGTGATGAACT
AGACTTTGCCAAAAGTTTCATAGGAATAGTTTCAATATTTTGTCTTTGTGCAACTTTGTTCACG
TTTCTTACTTTTTTAATTGACGTCAGAAGATTCAGGTACCCAGAGAGACCAATTATATACTACT
CCGTCTGTTACAGCATCGTCTCTCTCATGTACTTTGTTGGGTTTTTGCTGGGCAATAGCACAGC
TTGTAATAAGGCAGATGAGAAGCTGGAACTCGGGAACACAGTCGTTCTAGGGTCAAAGAATAAG
GCTTGCAGCGTGGTGTTTATGTTTCTGTACTTTTTCACAATGGCCGGCACCGTGTGGTGGGTGA
TCCTCACCATTACGTGGTTCTTAGCCGCCGGAAGAAAATGGAGTTGCGAAGCTATTGAACAAAA
AGCAGTGTGGTTTCACGCCGTTGCCTGGGGGATGCCCGGGTTCCTGACTGTCATGCTGCTCGCT
ATGAACAAGGTTGAAGGAGACAACATTAGCGGCGTTTGCTTCGTTGGCCTGTATGACTTAGATG
CCTCCCGCTACTTCGTCCTTCTGCCTCTGTGCCTCTGTGTGTTTGTTGGGCTGTCTCTCCTCTT
AGCTGGCATCATTTCCTTAAATCACGTTCGACAAGTTATACAACATGATGGCCGAAACCAAGAG
AAGCTCAAGAAGTTCATGATCCGCATTGGAGTCTTCAGTGGCCTGTATCTTGTGCCCTTAGTGA
CGCTTCTTGGCTGCTATGTCTATGAGCTAGTGAACAGGGTCACCTGGGAGATGACGTGGTTCTC
TGATCACTGTCACCAGTACCGCATCCCGTGTCCTTACCAGGCAAACCCAAAAGCTCGACCAGAA
TTGGCTTTATTTATGATAAAATATCTGATGACATTAATTGTTGGTATCTCTGCGGTCTTCTGGG
TTGGAAGCAAAAAGACGTGCACAGAATGGGCCGGGTTCTGTAAGCGAAACCGCAAGCGCGACCC
CATCAGTGAGAGCCGAAGAGTGCTGCAAGAGTCCTGTGAGTTCTTCCTGAAGCACAATTCCAAA
GTGAGGCACAAGAAGAAGCATGGCAAACCAGGCTCACATAAACTGAAGGTCATTTCCAAGTCCA
TGGGAACTAGCACGGGCGTGACCACAGACCATGGCACCTCTGCCGTAGCAATTGCCGACCATGA
TTACTTAGGGCAGGAAACTTCAGCAGAAGTCCAGACCTCCCCAGAAGCATCCCTGAAAGAGGGG
AGAGCAGACCGAGCAAACACGCCCAGAGCCAAAGGTCCAGACTGTGGAGAACCTGCTTCCACAG
CAGCGTCCAACTCCAAGTTCTCTGGGGACCAGATCGACAGGAAAAGCCGAGCAGGCAGCGTGAA
GGAGAAAAGCAGCGTATCGGAAGGGGCTCCAAGTGAAGGAAGGGTAAGTCCAAAGGGCGTTCCT
GGGACTGGCCTGATGGAGTGCACTTTACAGATCCCCAGCTCTCCAGAACCAAACAGCCTCAAAG
GTTCCACATCTCTGCTTGTTCGCTCAGCTTCCGGAACTAGGAAAGAGCAGGGTGCTGGCGGCCA
TTCTGATACTTGAAGAAAACTGTCTCTACCCCGGGAGCTGTACACTACACTGGAGACGACCTTG
TCTTATAAAAGAACACTGTGGAGCTGGGAGTTGCCCAGTGGCAGAGTGCTCACCTGGGATACTT
GAGGACCTGGGTTTACCTCTCAGCACAGCAGAAAGAGAGTTCACTGTTGCCGTCTTCCATGCAC
TTAAGCCAGCTTTGTCTACTGGTTTTTTTGGCTTGGCTTTTATTTTTGTTGCTTTTATTTTTGT
TGTTGTTGTTGTTCGTTTGTTTGTTTGTTTGTTTGATTCAGGGTTTCTTTGTGAGCCCTGGCTG
TCCTGGAACTCCCTCTGTAGACCAGGCTAGCCTCAAAGTTCCAGAGATTCGCCTGCCTCTGCCT
CCCGGGTGCTGGGAATAATGGTGTGGCTACCACCGCCCAGCCTTTTGTCTACTGTTAAACTGGA
AAGAAACAACAGCCCAGATTTCAAAAATAATATAATGCATTTATACCTAAAAAAAAGGAATGTC
CAGGTTAATAATATTTTTTAAATGTGGGGGTAGGAAGGGCATTAGAAATTTCCTTCTGTTTATG
AAGATTCTTTCATTAAAGTATTTAAGATATTTTATGCTGTTTCACTCTTTTTTTTTTTTTTTTT
TTTTGGTTCGTTTTTTTCGGAGCTGGAGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGC
TCTACCACTGAGCTAAAGCCCCAGCCCCTTGTTTCACTCTTTTGATATAAATTCAGGATTTTTC
TTTGCTGAAGTATTTAAAACTTATCATTGAACCTTTATATGTAGATACATAAGTATTTGAACTT
TTTTGAAAATCCTAGAAAATTGAATCAAATATGTTTATGATGTTTTTAATATTTTGGCTACTTT
GCAACTATGGTAGCTGTTACACTGGATTCTAAGGAGCTTACGCAGCAGCCTCTCTCCAGTAACG
GAGTAGGTGTCACACTGAAAGGTTTGTAAGAAGCGCTCAGCTCTCAGAGCCGCTCTTGCCTTCC
CTGGACTGAGGAACTTGCTGACAGTCTCTCCCAAGTGTATGGTCCCTTTCCTCCTGCGTGTTCG
CAAATTAGCAGGTGAGATGTTAGTTCTTTACAAATTAGGCCACTCTGTTTATTTCCTTTTTGTT
TTAAGTGTTTCATGACCACTCAAGATTGAATTATGGCCATTTTTAATGGCTCGTGCCTGTTTTA
TTTTATCTTACTCTTCTATTTTCTGAGACAGGGTCTCACTGTCGCTCTCCTTGGCTGTCTGGTG
CTCAGTGAGACTTCGCACATCACAGAGGTCCACCCTCTGCAGTTCACTCATCTCCCAAGTGCTG
GGGTTAAAGGCTTGAACCACCACACTCAGCTTTTATCTTTTTTAAAAAATTTAAACTTAAAAAA
TGTTTTTAGAATGCTACAGACACATTGTGTTGTATCTTTCTTAGACAGTTTACAAAATTCCTAT
CTGCAGCTAAACCTGATAAAGAAAATGTGCTGAGGACAGAGTGGGGCAGGGAGAGTGTAGTGTA
GCAAATACAGTGTGAAAAGACACTTAAAGTGCTAAGAGAGTTTCTTAATGTTGTTTCTCCCCAA
GTATTATCTCTGCAGCAAGGTTCTCTTGGCTACCTTGAGCCTGTTGGACCCCTGTTAAAGTTTA
AAATGAAAGTTATCATGTACTGTATGGAAAATGTAAATACTAACTTTTCCACAAATGTAAACTT
TGGACACAAGAACTTTTTTGTGTGATCTTTTCATCAATAAAATTTTCTTTGTATAAAAA

hide sequence

RefSeq Acc Id:

XM_039078519 ⟹ XP_038934447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,939,917 - 71,971,685 (+)	NCBI
mRatBN7.2	7	70,055,012 - 70,086,781 (+)	NCBI

RefSeq Acc Id:

XM_039078520 ⟹ XP_038934448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,939,917 - 71,971,685 (+)	NCBI
mRatBN7.2	7	70,055,012 - 70,086,781 (+)	NCBI

RefSeq Acc Id:

XM_063263073 ⟹ XP_063119143

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,939,973 - 71,971,685 (+)	NCBI

RefSeq Acc Id:

XM_063263074 ⟹ XP_063119144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,959,275 - 71,971,685 (+)	NCBI

RefSeq Acc Id:

XM_063263075 ⟹ XP_063119145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,961,388 - 71,971,685 (+)	NCBI

RefSeq Acc Id:

XR_005486551

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	71,940,298 - 71,968,425 (+)	NCBI
mRatBN7.2	7	70,055,069 - 70,083,521 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001124008	(Get FASTA)	NCBI Sequence Viewer
	NP_001426815	(Get FASTA)	NCBI Sequence Viewer
	NP_001426816	(Get FASTA)	NCBI Sequence Viewer
	NP_001426817	(Get FASTA)	NCBI Sequence Viewer
	NP_001426818	(Get FASTA)	NCBI Sequence Viewer
	XP_017450173	(Get FASTA)	NCBI Sequence Viewer
	XP_017450175	(Get FASTA)	NCBI Sequence Viewer
	XP_038934447	(Get FASTA)	NCBI Sequence Viewer
	XP_038934448	(Get FASTA)	NCBI Sequence Viewer
	XP_063119143	(Get FASTA)	NCBI Sequence Viewer
	XP_063119144	(Get FASTA)	NCBI Sequence Viewer
	XP_063119145	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAN51981	(Get FASTA)	NCBI Sequence Viewer
	EDM16356	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006195
	ENSRNOP00000006195.5
	ENSRNOP00000104505
	ENSRNOP00000104505.1

RefSeq Acc Id:	NP_001124008 ⟸ NM_001130536
- Peptide Label:	precursor
- UniProtKB:	G3V6L1 (UniProtKB/TrEMBL), A6HR66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEASPFLSACILLPLIRGHSLFTCEPITVPRCMKMAYNMTFFPNLMGHYDQGIAAVEMEHFLPL ANLECSPNIEMFLCQAFVPTCTEQIDVVSPCRKLCEKILSDCQKLMDTFGIRWPEELECHRLPY CDGAVPVTSDPHTELFGPQKKTDQVPRDIGFWCPKHLRTSGDQGYRFLGIDQCAPPCPNMYFKS DELDFAKSFIGIVSIFCLCATLFTFLTFLIDVRRFRYPERPIIYYSVCYSIVSLMYFVGFLLGN STACNKADEKLELGNTVVLGSKNKACSVVFMFLYFFTMAGTVWWVILTITWFLAAGRKWSCEAI EQKAVWFHAVAWGMPGFLTVMLLAMNKVEGDNISGVCFVGLYDLDASRYFVLLPLCLCVFVGLS LLLAGIISLNHVRQVIQHDGRNQEKLKKFMIRIGVFSGLYLVPLVTLLGCYVYELVNRVTWEMT WFSDHCHQYRIPCPYQANPKARPELALFMIKYLMTLIVGISAVFWVGSKKTCTEWAGFCKRNRK RDPISESRRVLQESCEFFLKHNSKVRHKKKHGKPGSHKLKVISKSMGTSTGVTTDHGTSAVAIA DHDYLGQETSAEVQTSPEASLKEGRADRANTPRAKGPDCGEPASTAASNSKFSGDQIDRKSRAG SVKEKSSVSEGAPSEGRVSPKGVPGTGLMECTLQIPSSPEPNSLKGSTSLLVRSASGTRKEQGA GGHSDT hide sequence

RefSeq Acc Id:

XP_017450173 ⟸ XM_017594684

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEASPFLSACILLPLIRGHSLFTCEPITVPRCMKMAYNMTFFPNLMGHYDQGIAAVEMEHFLPL
ANLECSPNIEMFLCQAFVPTCTEQIDVVSPCRKLCEKILSDCQKLMDTFGIRWPEELECHRLPY
CDGAVPVTSDPHTELFGPQKKTDQVPRDIGFWCPKHLRTSGDQGYRFLGIDQCAPPCPNMYFKS
DELDFAKSFIGIVSIFCLCATLFTFLTFLIDVRRFRYPERPIIYYSVCYSIVSLMYFVGFLLGN
STACNKADEKLELGNTVVLGSKNKACSVVFMFLYFFTMAGTVWWVILTITWFLAAGRKWSCEAI
EQKAVWFHAVAWGMPGFLTVMLLAMNKVEGDNISGVCFVGLYDLDASRYFVLLPLCLCVFVGLS
LLLAGIISLNHVRQVIQHDGRNQEKLKKFMIRIGVFSGLYLVPLVTLLGCYVYELVNRVTWEMT
WFSDHCHQYRIPCPYQANPKARPELALFMIKYLMTLIVGISAVFWVGSKKTCTEWAGFCKRNRK
RDPISESRRVLQESCEFFLKHNSKVRHKKKHGKPGSHKLKVISKSMGTSTGVTTDHGTSAVAIA
DHDYLGQETSAEVQTSPEASLKEGRADRANTPRAKGPDCGEPASTAASNSKFSGDQIDRKSRAG
SVKEKSSVSEGAPSEGRVSPKGVPGTGLMECTLQIPSSPEPNSLKGSTSLLVRSASGTRKEQGA
GGHSDT

hide sequence

RefSeq Acc Id:

XP_017450175 ⟸ XM_017594686

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEASPFLSACILLPLIRGHSLFTCEPITVPRCMKMAYNMTFFPNLMGHYDQGIAAVEMEHFLPL
ANLECSPNIEMFLCQAFVPTCTEQIDVVSPCRKLCEKILSDCQKLMDTFGIRWPEELECHRLPY
CDGAVPVTSDPHTELFGPQKKTDQVPRDIGFWCPKHLRTSGDQGYRFLGIDQCAPPCPNMYFKS
DELDFAKSFIGIVSIFCLCATLFTFLTFLIDVRRFRYPERPIIYYSVCYSIVSLMYFVGFLLGN
STACNKADEKLELGNTVVLGSKNKACSVVFMFLYFFTMAGTVWWVILTITWFLAAGRKWSCEAI
EQKAVWFHAVAWGMPGFLTVMLLAMNKVEGDNISGVCFVGLYDLDASRYFVLLPLCLCVFVGLS
LLLAGIISLNHVRQVIQHDGRNQEKLKKFMIRIGVFSGLYLVPLVTLLGCYVYELVNRVTWEMT
WFSDHCHQYRIPCPYQANPKARPELALFMIKYLMTLIVGISAVFWVGSKKTCTEWAGFCKRNRK
RDPISESRRVLQESCEFFLKHNSKVRHKKKHGKPGSHKLKVISKSMGTSTGVTTDHGTSAVAIA
DHDYLGQETSAEVQTSPEASLKEGRADRANTPRAKGPDCGEPASTAASNSKFSGDQIDRKSRAG
SVKEKSSVSEGAPSEGRVSPKGVPGTGLMECTLQIPSSPEPNSLKGSTSLLVRSASGTRKEQGA
GGHSDT

hide sequence

Ensembl Acc Id:

ENSRNOP00000006195 ⟸ ENSRNOT00000006195

RefSeq Acc Id:	XP_038934447 ⟸ XM_039078519
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038934448 ⟸ XM_039078520
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063119143 ⟸ XM_063263073
- Peptide Label:	isoform X1
- UniProtKB:	A6HR66 (UniProtKB/TrEMBL), G3V6L1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119144 ⟸ XM_063263074
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063119145 ⟸ XM_063263075
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000104505 ⟸ ENSRNOT00000125394

Protein Domains

FZ G-protein coupled receptors family 2 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V6L1-F1-model_v2	AlphaFold	G3V6L1	1-710	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695304

Promoter ID:

EPDNEW_R5829

Type:

initiation region

Name:

Fzd6_1

Description:

frizzled class receptor 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	77,899,251 - 77,899,311	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628816	AgrOrtholog
BioCyc Gene	G2FUF-33579	BioCyc
Ensembl Genes	ENSRNOG00000004660	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006195	ENTREZGENE
	ENSRNOT00000006195.7	UniProtKB/TrEMBL
	ENSRNOT00000125394	ENTREZGENE
	ENSRNOT00000125394.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.2000.10	UniProtKB/TrEMBL
	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	Frizzled	UniProtKB/TrEMBL
	Frizzled/SFRP	UniProtKB/TrEMBL
	Frizzled_dom	UniProtKB/TrEMBL
	Frizzled_dom_sf	UniProtKB/TrEMBL
	FZ6_CRD	UniProtKB/TrEMBL
	FZD6_TM	UniProtKB/TrEMBL
	GPCR_2-like	UniProtKB/TrEMBL
KEGG Report	rno:282581	UniProtKB/TrEMBL
NCBI Gene	282581	ENTREZGENE
PANTHER	PTHR11309	UniProtKB/TrEMBL
	PTHR11309:SF75	UniProtKB/TrEMBL
Pfam	Frizzled	UniProtKB/TrEMBL
	PF01392	UniProtKB/TrEMBL
PharmGKB	FZD6	RGD
PhenoGen	Fzd6	PhenoGen
PRINTS	FRIZZLED	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F2_4	UniProtKB/TrEMBL
	PS50038	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004660	RatGTEx
SMART	FRI	UniProtKB/TrEMBL
	Frizzled	UniProtKB/TrEMBL
Superfamily-SCOP	Frizzled_Cys-rich	UniProtKB/TrEMBL
UniProt	A0ABK0L4I7_RAT	UniProtKB/TrEMBL
	A6HR66	ENTREZGENE, UniProtKB/TrEMBL
	G3V6L1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-02-06	Fzd6	frizzled class receptor 6	Fzd6	frizzled family receptor 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-02	Fzd6	frizzled family receptor 6	Fzd6	frizzled homolog 6 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Fzd6	frizzled homolog 6 (Drosophila)			Symbol and Name status set to approved	1299863	APPROVED
2003-02-27	Fzd6	frizzled homolog 6 (Drosophila)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)