LOC120096510 (oogenesin-1-like) - Rat Genome Database

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Gene: LOC120096510 (oogenesin-1-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120096510
Name: oogenesin-1-like
RGD ID: 41183035
Description: Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul2-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to several human genes including PRAMEF1 (PRAME family member 1); PRAMEF10 (PRAME family member 10); and PRAMEF11 (PRAME family member 11).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PRAME family member 18-like; PRAME family member 8-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81414,107,124 - 14,109,798 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21413,803,173 - 13,805,847 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1413,803,173 - 13,805,847 (-)EnsemblmRatBN7.2
Cytogenetic Map14p22NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120096510
47 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
1 1

Sequence


Ensembl Acc Id: ENSRNOT00000104404   ⟹   ENSRNOP00000094099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1413,803,173 - 13,805,847 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114899   ⟹   ENSRNOP00000077877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1413,803,173 - 13,805,847 (-)Ensembl
RefSeq Acc Id: XM_039092544   ⟹   XP_038948472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81414,107,124 - 14,109,798 (-)NCBI
mRatBN7.21413,803,173 - 13,805,847 (-)NCBI
RefSeq Acc Id: XM_039092545   ⟹   XP_038948473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81414,107,124 - 14,109,798 (-)NCBI
mRatBN7.21413,803,173 - 13,805,847 (-)NCBI
RefSeq Acc Id: XM_039092547   ⟹   XP_038948475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81414,107,124 - 14,109,798 (-)NCBI
mRatBN7.21413,803,173 - 13,805,847 (-)NCBI
RefSeq Acc Id: XM_063273867   ⟹   XP_063129937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81414,107,557 - 14,109,798 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038948472 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948473 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000111968
  ENSRNOP00000111968.1
RefSeq Acc Id: XP_038948475   ⟸   XM_039092547
- Peptide Label: isoform X3
- UniProtKB: A0A8I5XWL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948473   ⟸   XM_039092545
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948472   ⟸   XM_039092544
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AK48 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077877   ⟸   ENSRNOT00000114899
Ensembl Acc Id: ENSRNOP00000094099   ⟸   ENSRNOT00000104404
RefSeq Acc Id: XP_063129937   ⟸   XM_063273867
- Peptide Label: isoform X4

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41183035 AgrOrtholog
BioCyc Gene G2FUF-16312 BioCyc
Ensembl Genes ENSRNOG00000063375 Ensembl
  ENSRNOG00000088869 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000125822 ENTREZGENE
  ENSRNOT00000125822.1 UniProtKB/TrEMBL
NCBI Gene LOC120096510 ENTREZGENE
PhenoGen LOC120096510 PhenoGen
RatGTEx ENSRNOG00000063375 RatGTEx
  ENSRNOG00000088869 RatGTEx
UniProt A0A8I5XWL4 ENTREZGENE
  A0A8I6AK48 ENTREZGENE
  A0ABK0M1V6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120096510  oogenesin-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL