Ankrd17 (ankyrin repeat domain 17) - Rat Genome Database

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Gene: Ankrd17 (ankyrin repeat domain 17) Rattus norvegicus
Analyze
Symbol: Ankrd17
Name: ankyrin repeat domain 17
RGD ID: 1562348
Description: Predicted to enable chromatin binding activity. Predicted to be involved in several processes, including defense response to other organism; positive regulation of G1/S transition of mitotic cell cycle; and positive regulation of intracellular signal transduction. Predicted to act upstream of or within blood vessel maturation and negative regulation of smooth muscle cell differentiation. Predicted to be located in chromatin and nucleus. Predicted to be active in cytoplasm and nucleus. Orthologous to human ANKRD17 (ankyrin repeat domain 17); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat domain protein 17; ankyrin repeat domain-containing protein 17; LOC289521; RGD1562348; similar to ankyrin repeat domain protein 17 isoform b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81418,007,342 - 18,145,980 (+)NCBIGRCr8
mRatBN7.21417,723,239 - 17,861,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1417,721,932 - 17,862,617 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1417,709,531 - 17,846,463 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01419,028,441 - 19,165,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01417,728,209 - 17,865,268 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01419,291,025 - 19,431,521 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1419,318,565 - 19,431,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01419,199,983 - 19,337,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41419,273,617 - 19,387,067 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1417,114,939 - 17,227,887 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
cytoplasm  (IBA,ISO)
male germ cell nucleus  (ISO)
nuclear membrane  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19150984   PMID:19619540   PMID:19946888   PMID:22190705   PMID:22328336   PMID:22658674   PMID:23711367  


Genomics

Comparative Map Data
Ankrd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81418,007,342 - 18,145,980 (+)NCBIGRCr8
mRatBN7.21417,723,239 - 17,861,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1417,721,932 - 17,862,617 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1417,709,531 - 17,846,463 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01419,028,441 - 19,165,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01417,728,209 - 17,865,268 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01419,291,025 - 19,431,521 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1419,318,565 - 19,431,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01419,199,983 - 19,337,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41419,273,617 - 19,387,067 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1417,114,939 - 17,227,887 (+)NCBICelera
Cytogenetic Map14p22NCBI
ANKRD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38473,073,376 - 73,258,798 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl473,073,376 - 73,258,798 (-)EnsemblGRCh38hg38GRCh38
GRCh37473,939,093 - 74,124,515 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36474,159,366 - 74,343,366 (-)NCBINCBI36Build 36hg18NCBI36
Celera471,296,572 - 71,480,590 (-)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef469,746,942 - 69,930,806 (-)NCBIHuRef
CHM1_1473,976,362 - 74,160,315 (-)NCBICHM1_1
T2T-CHM13v2.0476,416,991 - 76,602,444 (-)NCBIT2T-CHM13v2.0
Ankrd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39590,375,025 - 90,517,133 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl590,375,025 - 90,514,436 (-)EnsemblGRCm39 Ensembl
GRCm38590,227,166 - 90,368,693 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,227,166 - 90,366,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv37590,656,191 - 90,795,211 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36591,302,365 - 91,441,385 (-)NCBIMGSCv36mm8
Celera588,385,430 - 88,526,430 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.32NCBI
Ankrd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955447259,655 - 376,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955447259,654 - 376,147 (+)NCBIChiLan1.0ChiLan1.0
ANKRD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2356,806,903 - 56,991,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1456,995,976 - 57,180,832 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0450,939,013 - 51,124,185 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1456,769,448 - 57,440,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl456,770,798 - 57,439,365 (+)Ensemblpanpan1.1panPan2
ANKRD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11361,892,872 - 62,046,625 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1361,893,951 - 62,012,404 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1361,562,518 - 61,716,172 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01362,702,624 - 62,856,366 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1362,703,445 - 62,856,314 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11362,311,728 - 62,465,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01361,800,602 - 61,954,217 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01362,952,491 - 63,106,314 (-)NCBIUU_Cfam_GSD_1.0
Ankrd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528513,739,260 - 13,887,318 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365982,191,735 - 2,340,453 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365982,191,604 - 2,338,832 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl869,360,649 - 69,531,286 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1869,360,641 - 69,531,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2873,361,462 - 73,453,165 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1721,536,241 - 21,719,320 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl721,535,409 - 21,683,246 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660841,077,914 - 1,262,149 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473534,337,835 - 34,519,559 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473534,337,722 - 34,516,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ankrd17
348 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:665
Count of miRNA genes:270
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000068682
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141762268518274498Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat

Markers in Region
RH127459  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21417,860,695 - 17,860,878 (+)MAPPERmRatBN7.2
Rnor_6.01419,429,592 - 19,429,774NCBIRnor6.0
Rnor_5.01419,335,923 - 19,336,105UniSTSRnor5.0
RGSC_v3.41419,385,138 - 19,385,320UniSTSRGSC3.4
Celera1417,225,958 - 17,226,140UniSTS
RH 3.4 Map14243.2UniSTS
Cytogenetic Map14p22UniSTS
BI291183  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21417,806,920 - 17,807,070 (+)MAPPERmRatBN7.2
Rnor_6.01419,375,821 - 19,375,970NCBIRnor6.0
Rnor_5.01419,282,152 - 19,282,301UniSTSRnor5.0
RGSC_v3.41419,330,873 - 19,331,022UniSTSRGSC3.4
Celera1417,172,198 - 17,172,347UniSTS
RH 3.4 Map14226.9UniSTS
Cytogenetic Map14p22UniSTS
AI598408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21417,758,460 - 17,758,617 (+)MAPPERmRatBN7.2
Rnor_6.01419,327,369 - 19,327,525NCBIRnor6.0
Rnor_5.01419,233,700 - 19,233,856UniSTSRnor5.0
RGSC_v3.41419,282,421 - 19,282,577UniSTSRGSC3.4
Celera1417,123,735 - 17,123,891UniSTS
RH 3.4 Map14226.7UniSTS
Cytogenetic Map14p22UniSTS
RH124614  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21417,861,533 - 17,861,790 (+)MAPPERmRatBN7.2
Rnor_6.01419,430,430 - 19,430,686NCBIRnor6.0
Rnor_5.01419,336,761 - 19,337,017UniSTSRnor5.0
RGSC_v3.41419,385,976 - 19,386,232UniSTSRGSC3.4
Celera1417,226,796 - 17,227,052UniSTS
Cytogenetic Map14p22UniSTS
G34499  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21417,845,565 - 17,845,674 (+)MAPPERmRatBN7.2
Rnor_6.01419,414,466 - 19,414,574NCBIRnor6.0
Rnor_5.01419,320,797 - 19,320,905UniSTSRnor5.0
RGSC_v3.41419,369,518 - 19,369,626UniSTSRGSC3.4
Celera1417,210,846 - 17,210,954UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001105999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068682   ⟹   ENSRNOP00000059864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1417,749,655 - 17,862,617 (+)Ensembl
Rnor_6.0 Ensembl1419,318,565 - 19,431,515 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086542   ⟹   ENSRNOP00000069642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1417,749,655 - 17,862,617 (+)Ensembl
Rnor_6.0 Ensembl1419,319,299 - 19,429,637 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112709   ⟹   ENSRNOP00000086651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1417,721,932 - 17,862,617 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119401   ⟹   ENSRNOP00000095296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1417,721,932 - 17,862,617 (+)Ensembl
RefSeq Acc Id: NM_001105999   ⟹   NP_001099469
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,034,660 - 18,145,980 (+)NCBI
mRatBN7.21417,750,513 - 17,861,841 (+)NCBI
Rnor_6.01419,318,565 - 19,431,521 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
RGSC_v3.41419,273,617 - 19,387,067 (+)RGD
Celera1417,114,939 - 17,227,887 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401338   ⟹   NP_001388267
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,008,859 - 18,145,980 (+)NCBI
mRatBN7.21417,724,711 - 17,861,841 (+)NCBI
RefSeq Acc Id: NM_001401339   ⟹   NP_001388268
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,008,859 - 18,145,980 (+)NCBI
mRatBN7.21417,724,711 - 17,861,841 (+)NCBI
RefSeq Acc Id: NM_001401343   ⟹   NP_001388272
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,034,660 - 18,145,980 (+)NCBI
mRatBN7.21417,750,513 - 17,861,841 (+)NCBI
RefSeq Acc Id: XM_006250766   ⟹   XP_006250828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,019,535 - 18,145,980 (+)NCBI
mRatBN7.21417,749,520 - 17,861,841 (+)NCBI
Rnor_6.01419,318,443 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770011   ⟹   XP_008768233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,019,535 - 18,145,980 (+)NCBI
mRatBN7.21417,749,519 - 17,861,841 (+)NCBI
Rnor_6.01419,318,443 - 19,430,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599098   ⟹   XP_017454587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,007,342 - 18,145,980 (+)NCBI
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,025 - 19,430,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063272901   ⟹   XP_063128971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,007,342 - 18,145,980 (+)NCBI
RefSeq Acc Id: XM_063272902   ⟹   XP_063128972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,007,342 - 18,145,980 (+)NCBI
RefSeq Acc Id: XM_063272903   ⟹   XP_063128973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81418,020,407 - 18,145,980 (+)NCBI
RefSeq Acc Id: NP_001099469   ⟸   NM_001105999
- Peptide Label: isoform 3
- UniProtKB: D4A0B4 (UniProtKB/TrEMBL),   A6KKG2 (UniProtKB/TrEMBL),   A6KKG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250828   ⟸   XM_006250766
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JVW3 (UniProtKB/TrEMBL),   A6KKG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768233   ⟸   XM_008770011
- Peptide Label: isoform X4
- UniProtKB: A6KKG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454587   ⟸   XM_017599098
- Peptide Label: isoform X1
- UniProtKB: A6KKG3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059864   ⟸   ENSRNOT00000068682
Ensembl Acc Id: ENSRNOP00000069642   ⟸   ENSRNOT00000086542
Ensembl Acc Id: ENSRNOP00000095296   ⟸   ENSRNOT00000119401
Ensembl Acc Id: ENSRNOP00000086651   ⟸   ENSRNOT00000112709
RefSeq Acc Id: NP_001388267   ⟸   NM_001401338
- Peptide Label: isoform 1
- UniProtKB: A0A8I6AAR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388268   ⟸   NM_001401339
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AL58 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388272   ⟸   NM_001401343
- Peptide Label: isoform 4
RefSeq Acc Id: XP_063128971   ⟸   XM_063272901
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063128972   ⟸   XM_063272902
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063128973   ⟸   XM_063272903
- Peptide Label: isoform X6
Protein Domains
K Homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVW3-F1-model_v2 AlphaFold A0A0G2JVW3 1-2524 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562348 AgrOrtholog
BioCyc Gene G2FUF-16184 BioCyc
Ensembl Genes ENSRNOG00000002940 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068682.3 UniProtKB/TrEMBL
  ENSRNOT00000086542.2 UniProtKB/TrEMBL
  ENSRNOT00000112709.1 UniProtKB/TrEMBL
  ENSRNOT00000119401.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/TrEMBL
InterPro Ankyrin-KH/SAM_domain UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  KH-I_ANKRD17 UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
KEGG Report rno:289521 UniProtKB/TrEMBL
NCBI Gene 289521 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 17 UniProtKB/TrEMBL
  MASK PROTEIN UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PhenoGen Ankrd17 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  KH_TYPE_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002940 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0A0G2JVW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AL58 ENTREZGENE, UniProtKB/TrEMBL
  A6KKG2 ENTREZGENE, UniProtKB/TrEMBL
  A6KKG3 ENTREZGENE, UniProtKB/TrEMBL
  D4A0B4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Ankrd17  ankyrin repeat domain 17  RGD1562348_predicted  similar to ankyrin repeat domain protein 17 isoform b (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562348_predicted  similar to ankyrin repeat domain protein 17 isoform b (predicted)  LOC289521  similar to ankyrin repeat domain protein 17 isoform b  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC289521  similar to ankyrin repeat domain protein 17 isoform b      Symbol and Name status set to provisional 70820 PROVISIONAL