Katnal1 (katanin catalytic subunit A1 like 1) - Rat Genome Database

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Gene: Katnal1 (katanin catalytic subunit A1 like 1) Rattus norvegicus
Analyze
Symbol: Katnal1
Name: katanin catalytic subunit A1 like 1
RGD ID: 1359252
Description: Predicted to enable ATP hydrolysis activity; identical protein binding activity; and microtubule severing ATPase activity. Predicted to be involved in microtubule severing. Predicted to act upstream of or within spermatogenesis. Predicted to be located in cytoplasm; microtubule; and spindle pole. Predicted to be part of katanin complex. Predicted to be active in microtubule cytoskeleton. Orthologous to human KATNAL1 (katanin catalytic subunit A1 like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4-amino-2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: katanin p60 ATPase-containing subunit A-like 1; katanin p60 ATPase-containing subunit A-like 1-like; katanin p60 subunit A-like 1; LOC100910196; p60 katanin-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,130,935 - 11,192,330 (+)NCBIGRCr8
mRatBN7.2126,094,663 - 6,156,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,102,836 - 6,157,553 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,775,873 - 6,829,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,399,004 - 7,452,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,427,004 - 6,480,559 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,495,436 - 7,550,205 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,208,850 - 7,271,872 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,454,884 - 7,548,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,582,124 - 9,635,341 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,604,616 - 6,657,793 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1126,623,923 - 6,677,675 (+)NCBI
Celera127,861,836 - 7,914,959 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA)
cytoplasm  (ISO,ISS)
katanin complex  (ISO)
microtubule  (ISO,ISS)
microtubule cytoskeleton  (IBA,ISO)
spindle  (ISO,ISS)
spindle pole  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22654668   PMID:25416956   PMID:26929214  


Genomics

Comparative Map Data
Katnal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,130,935 - 11,192,330 (+)NCBIGRCr8
mRatBN7.2126,094,663 - 6,156,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,102,836 - 6,157,553 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,775,873 - 6,829,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,399,004 - 7,452,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,427,004 - 6,480,559 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,495,436 - 7,550,205 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,208,850 - 7,271,872 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,454,884 - 7,548,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,582,124 - 9,635,341 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,604,616 - 6,657,793 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1126,623,923 - 6,677,675 (+)NCBI
Celera127,861,836 - 7,914,959 (+)NCBICelera
Cytogenetic Map12p11NCBI
KATNAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,202,630 - 30,307,551 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,202,630 - 30,307,551 (-)EnsemblGRCh38hg38GRCh38
GRCh371330,776,767 - 30,881,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361329,674,767 - 29,779,584 (-)NCBINCBI36Build 36hg18NCBI36
Build 341329,680,608 - 29,779,584NCBI
Celera1311,846,314 - 11,951,125 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1311,590,743 - 11,698,607 (-)NCBIHuRef
CHM1_11330,744,357 - 30,849,190 (-)NCBICHM1_1
T2T-CHM13v2.01329,425,152 - 29,530,029 (-)NCBIT2T-CHM13v2.0
Katnal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,808,394 - 148,865,978 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,808,394 - 148,931,957 (-)EnsemblGRCm39 Ensembl
GRCm385148,871,584 - 148,929,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,871,584 - 148,929,320 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,683,160 - 149,740,223 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,186,415 - 149,238,967 (-)NCBIMGSCv36mm8
Celera5146,881,281 - 146,939,281 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.04NCBI
Katnal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,534,330 - 15,616,623 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,534,032 - 15,616,623 (+)NCBIChiLan1.0ChiLan1.0
KATNAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21429,790,185 - 29,892,865 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11320,896,829 - 20,999,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,483,677 - 11,586,267 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11329,926,292 - 30,022,717 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1329,924,659 - 30,022,717 (-)Ensemblpanpan1.1panPan2
KATNAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,710,528 - 9,824,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,710,995 - 9,823,925 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,755,752 - 9,869,494 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,822,834 - 9,937,869 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,822,899 - 9,901,147 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,718,064 - 9,832,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,725,668 - 9,839,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,767,336 - 9,881,504 (+)NCBIUU_Cfam_GSD_1.0
Katnal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,852,566 - 170,929,656 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,024,200 - 25,099,470 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,022,499 - 25,099,577 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KATNAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,001,313 - 7,064,439 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1116,998,003 - 7,064,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,746,331 - 6,909,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KATNAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,106,622 - 9,198,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl39,107,161 - 9,198,111 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605735,166,899 - 35,260,775 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Katnal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,050,068 - 8,163,001 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247768,050,859 - 8,166,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Katnal1
659 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:60
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000001219
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat

Markers in Region
RH144074  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0129,540,777 - 9,540,984NCBIRnor5.0
Rnor_5.0129,581,329 - 9,581,536NCBIRnor5.0
RGSC_v3.4126,603,822 - 6,604,028UniSTSRGSC3.4
Celera127,861,042 - 7,861,248UniSTS
RH 3.4 Map1259.5UniSTS
Cytogenetic Map12p11UniSTS
BE106585  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0129,545,619 - 9,545,784NCBIRnor5.0
Rnor_5.0129,586,171 - 9,586,336NCBIRnor5.0
RGSC_v3.4126,608,664 - 6,608,828UniSTSRGSC3.4
Celera127,865,884 - 7,866,048UniSTS
RH 3.4 Map1259.93UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
14 40 134 82 78 41 22 41 12 186 88 108 43 72 37

Sequence


Ensembl Acc Id: ENSRNOT00000001219   ⟹   ENSRNOP00000001219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl127,208,850 - 7,271,872 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000072801   ⟹   ENSRNOP00000065936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl127,502,925 - 7,548,448 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077328   ⟹   ENSRNOP00000068753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,102,836 - 6,157,553 (+)Ensembl
Rnor_6.0 Ensembl127,454,884 - 7,548,533 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078798   ⟹   ENSRNOP00000074370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl127,464,155 - 7,548,614 (+)Ensembl
RefSeq Acc Id: NM_001006956   ⟹   NP_001006957
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,139,153 - 11,192,330 (+)NCBI
mRatBN7.2126,102,886 - 6,156,065 (+)NCBI
Rnor_6.0127,495,436 - 7,548,535 (+)NCBI
Rnor_5.0129,582,124 - 9,635,341 (+)NCBI
RGSC_v3.4126,604,616 - 6,657,793 (+)RGD
Celera127,861,836 - 7,914,959 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248816   ⟹   XP_006248878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,138,213 - 11,192,330 (+)NCBI
mRatBN7.2126,102,964 - 6,156,114 (+)NCBI
RefSeq Acc Id: XM_006248817   ⟹   XP_006248879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,130,935 - 11,192,330 (+)NCBI
mRatBN7.2126,094,663 - 6,156,114 (+)NCBI
RefSeq Acc Id: XM_017598481   ⟹   XP_017453970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,138,213 - 11,192,330 (+)NCBI
mRatBN7.2126,103,324 - 6,156,114 (+)NCBI
RefSeq Acc Id: XM_017598482   ⟹   XP_017453971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,130,951 - 11,192,330 (+)NCBI
mRatBN7.2126,095,239 - 6,156,114 (+)NCBI
RefSeq Acc Id: XM_039089157   ⟹   XP_038945085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,173,320 - 11,192,330 (+)NCBI
mRatBN7.2126,137,020 - 6,156,114 (+)NCBI
RefSeq Acc Id: NP_001006957   ⟸   NM_001006956
- UniProtKB: Q5XIK7 (UniProtKB/Swiss-Prot),   A6K183 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065936   ⟸   ENSRNOT00000072801
Ensembl Acc Id: ENSRNOP00000068753   ⟸   ENSRNOT00000077328
Ensembl Acc Id: ENSRNOP00000001219   ⟸   ENSRNOT00000001219
Ensembl Acc Id: ENSRNOP00000074370   ⟸   ENSRNOT00000078798
RefSeq Acc Id: XP_006248879   ⟸   XM_006248817
- Peptide Label: isoform X1
- UniProtKB: Q5XIK7 (UniProtKB/Swiss-Prot),   A6K183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453971   ⟸   XM_017598482
- Peptide Label: isoform X1
- UniProtKB: Q5XIK7 (UniProtKB/Swiss-Prot),   A6K183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248878   ⟸   XM_006248816
- Peptide Label: isoform X1
- UniProtKB: Q5XIK7 (UniProtKB/Swiss-Prot),   A6K183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453970   ⟸   XM_017598481
- Peptide Label: isoform X1
- UniProtKB: Q5XIK7 (UniProtKB/Swiss-Prot),   A6K183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038945085   ⟸   XM_039089157
- Peptide Label: isoform X2
Protein Domains
AAA+ ATPase   Katanin p60 ATPase-containing subunit A1 MIT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIK7-F1-model_v2 AlphaFold Q5XIK7 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359252 AgrOrtholog
BioCyc Gene G2FUF-20149 BioCyc
Ensembl Genes ENSRNOG00000000916 Ensembl
  ENSRNOG00000047618 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055003830 UniProtKB/Swiss-Prot
  ENSRNOG00060001909 UniProtKB/Swiss-Prot
  ENSRNOG00065006498 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077328.2 UniProtKB/Swiss-Prot
  ENSRNOT00055006045 UniProtKB/Swiss-Prot
  ENSRNOT00060002958 UniProtKB/Swiss-Prot
  ENSRNOT00065010023 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.8.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135708 IMAGE-MGC_LOAD
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KATNA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KATNA1_MIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Katnal1_chordates UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KTNA1_AAA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIT_dom_sf UniProtKB/TrEMBL
  MT-severing_AAA_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spast_Vps4_C UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report rno:288449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94518 IMAGE-MGC_LOAD
NCBI Gene 288449 ENTREZGENE
PANTHER AAA DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KATNA1_MIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Katnal1 PhenoGen
PROSITE AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000916 RatGTEx
  ENSRNOG00000047618 RatGTEx
  ENSRNOG00055003830 RatGTEx
  ENSRNOG00060001909 RatGTEx
  ENSRNOG00065006498 RatGTEx
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP MIT domain UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6K183 ENTREZGENE, UniProtKB/TrEMBL
  A6K184_RAT UniProtKB/TrEMBL
  KATL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Katnal1  katanin catalytic subunit A1 like 1  LOC100910196  katanin p60 ATPase-containing subunit A-like 1-like  Data merged from RGD:6499844 737654 PROVISIONAL
2016-03-29 Katnal1  katanin catalytic subunit A1 like 1  Katnal1  katanin p60 subunit A-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100910196  katanin p60 ATPase-containing subunit A-like 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-29 Katnal1  katanin p60 subunit A-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL