Katnal1 (katanin catalytic subunit A1 like 1) - Rat Genome Database

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Gene: Katnal1 (katanin catalytic subunit A1 like 1) Heterocephalus glaber
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Symbol: Katnal1
Name: katanin catalytic subunit A1 like 1
RGD ID: 18903725
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN microtubule severing (ortholog); spermatogenesis (ortholog); FOUND IN katanin complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: katanin p60 ATPase-containing subunit A-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,050,068 - 8,163,001 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247768,050,859 - 8,166,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Katnal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,050,068 - 8,163,001 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247768,050,859 - 8,166,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KATNAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,202,630 - 30,307,551 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,202,630 - 30,307,551 (-)EnsemblGRCh38hg38GRCh38
GRCh371330,776,767 - 30,881,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361329,674,767 - 29,779,584 (-)NCBINCBI36Build 36hg18NCBI36
Build 341329,680,608 - 29,779,584NCBI
Celera1311,846,314 - 11,951,125 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1311,590,743 - 11,698,607 (-)NCBIHuRef
CHM1_11330,744,357 - 30,849,190 (-)NCBICHM1_1
T2T-CHM13v2.01329,425,152 - 29,530,029 (-)NCBIT2T-CHM13v2.0
Katnal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,808,394 - 148,865,978 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,808,394 - 148,931,957 (-)EnsemblGRCm39 Ensembl
GRCm385148,871,584 - 148,929,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,871,584 - 148,929,320 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,683,160 - 149,740,223 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,186,415 - 149,238,967 (-)NCBIMGSCv36mm8
Celera5146,881,281 - 146,939,281 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.04NCBI
Katnal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,130,935 - 11,192,330 (+)NCBIGRCr8
mRatBN7.2126,094,663 - 6,156,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,102,836 - 6,157,553 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,775,873 - 6,829,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,399,004 - 7,452,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,427,004 - 6,480,559 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,495,436 - 7,550,205 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,208,850 - 7,271,872 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,454,884 - 7,548,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,582,124 - 9,635,341 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,604,616 - 6,657,793 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1126,623,923 - 6,677,675 (+)NCBI
Celera127,861,836 - 7,914,959 (+)NCBICelera
Cytogenetic Map12p11NCBI
Katnal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,534,330 - 15,616,623 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,534,032 - 15,616,623 (+)NCBIChiLan1.0ChiLan1.0
KATNAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21429,790,185 - 29,892,865 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11320,896,829 - 20,999,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,483,677 - 11,586,267 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11329,926,292 - 30,022,717 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1329,924,659 - 30,022,717 (-)Ensemblpanpan1.1panPan2
KATNAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,710,528 - 9,824,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,710,995 - 9,823,925 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,755,752 - 9,869,494 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,822,834 - 9,937,869 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,822,899 - 9,901,147 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,718,064 - 9,832,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,725,668 - 9,839,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,767,336 - 9,881,504 (+)NCBIUU_Cfam_GSD_1.0
Katnal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,852,566 - 170,929,656 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,024,200 - 25,099,470 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,022,499 - 25,099,577 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KATNAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,001,313 - 7,064,439 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1116,998,003 - 7,064,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,746,331 - 6,909,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KATNAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,106,622 - 9,198,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl39,107,161 - 9,198,111 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605735,166,899 - 35,260,775 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004883   ⟹   ENSHGLP00000004819
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247768,050,068 - 8,163,001 (+)Ensembl
RefSeq Acc Id: XM_004854785   ⟹   XP_004854842
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247768,051,159 - 8,166,799 (+)NCBI
RefSeq Acc Id: XM_004854786   ⟹   XP_004854843
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247768,050,859 - 8,166,799 (+)NCBI
RefSeq Acc Id: XM_004854787   ⟹   XP_004854844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247768,051,503 - 8,166,799 (+)NCBI
RefSeq Acc Id: XM_004854788   ⟹   XP_004854845
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247768,051,395 - 8,166,799 (+)NCBI
RefSeq Acc Id: XM_021236313   ⟹   XP_021091972
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247768,050,859 - 8,166,799 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854842 (Get FASTA)   NCBI Sequence Viewer  
  XP_004854843 (Get FASTA)   NCBI Sequence Viewer  
  XP_004854844 (Get FASTA)   NCBI Sequence Viewer  
  XP_004854845 (Get FASTA)   NCBI Sequence Viewer  
  XP_021091972 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004819
RefSeq Acc Id: XP_004854843   ⟸   XM_004854786
- Peptide Label: isoform X1
- UniProtKB: G5B269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021091972   ⟸   XM_021236313
- Peptide Label: isoform X2
- UniProtKB: G5B269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854842   ⟸   XM_004854785
- Peptide Label: isoform X1
- UniProtKB: G5B269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854845   ⟸   XM_004854788
- Peptide Label: isoform X1
- UniProtKB: G5B269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854844   ⟸   XM_004854787
- Peptide Label: isoform X1
- UniProtKB: G5B269 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004819   ⟸   ENSHGLT00000004883


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003538 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004883 ENTREZGENE
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  KATNA1 UniProtKB/TrEMBL
  KATNA1_MIT UniProtKB/TrEMBL
  Katnal1_chordates UniProtKB/TrEMBL
  KTNA1_AAA_dom UniProtKB/TrEMBL
  MT-severing_AAA_ATPase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Vps4_C UniProtKB/TrEMBL
NCBI Gene Katnal1 ENTREZGENE
PANTHER AAA DOMAIN-CONTAINING UniProtKB/TrEMBL
  KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 1 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  KATNA1_MIT UniProtKB/TrEMBL
  Vps4_C UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5B269 ENTREZGENE, UniProtKB/TrEMBL