Zkscan5 (zinc finger with KRAB and SCAN domains 5)

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Gene: Zkscan5 (zinc finger with KRAB and SCAN domains 5) Rattus norvegicus

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Symbol:

Zkscan5

Name:

zinc finger with KRAB and SCAN domains 5

RGD ID:

1311175

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZKSCAN5 (zinc finger with KRAB and SCAN domains 5); INTERACTS WITH aflatoxin B1; bisphenol A; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC304275; Zfp95; zinc finger protein 95; zinc finger protein with KRAB and SCAN domains 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,498,342 - 14,519,537 (-)	NCBI		GRCr8
mRatBN7.2	12	9,384,561 - 9,405,763 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,384,571 - 9,405,881 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	10,190,262 - 10,211,426 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,813,465 - 10,834,630 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,836,889 - 9,858,054 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,154,807 - 11,176,002 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,154,794 - 11,176,106 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	13,224,021 - 13,245,216 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	9,697,741 - 9,718,773 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	9,728,288 - 9,748,150 (-)	NCBI
Celera	12	11,189,559 - 11,210,703 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

aristolochic acid A (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

leflunomide (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

para-Nitrosodiphenylamine (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

progesterone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

testosterone (ISO)

thalidomide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Zkscan5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,498,342 - 14,519,537 (-)	NCBI		GRCr8
mRatBN7.2	12	9,384,561 - 9,405,763 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,384,571 - 9,405,881 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	10,190,262 - 10,211,426 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,813,465 - 10,834,630 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,836,889 - 9,858,054 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,154,807 - 11,176,002 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,154,794 - 11,176,106 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	13,224,021 - 13,245,216 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	9,697,741 - 9,718,773 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	9,728,288 - 9,748,150 (-)	NCBI
Celera	12	11,189,559 - 11,210,703 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

ZKSCAN5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	99,504,662 - 99,534,700 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	99,504,662 - 99,534,700 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	99,102,285 - 99,132,323 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	98,940,209 - 98,969,381 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	98,746,946 - 98,776,095	NCBI
Celera	7	93,836,480 - 93,865,674 (+)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	93,738,975 - 93,768,214 (+)	NCBI		HuRef
CHM1_1	7	99,032,363 - 99,061,544 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	100,739,627 - 100,773,622 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	98,462,045 - 98,491,238 (+)	NCBI

Zkscan5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	145,141,349 - 145,158,562 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	145,141,372 - 145,158,560 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	145,204,559 - 145,221,752 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	145,204,562 - 145,221,750 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	145,965,428 - 145,982,619 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	145,458,771 - 145,475,277 (+)	NCBI		MGSCv36	mm8
Celera	5	142,196,607 - 142,213,789 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	85.14	NCBI

Zkscan5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	15,173,718 - 15,196,207 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	15,173,397 - 15,196,590 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZKSCAN5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	117,360,729 - 117,395,215 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	165,625,379 - 165,659,673 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	91,476,962 - 91,507,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	104,979,714 - 105,009,521 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	104,979,816 - 105,009,236 (+)	Ensembl	panpan1.1		panPan2

ZKSCAN5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	10,010,083 - 10,031,482 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	10,011,321 - 10,031,624 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	11,636,650 - 11,657,369 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	10,010,757 - 10,031,478 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	10,008,764 - 10,031,429 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	9,874,068 - 9,894,747 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	9,858,964 - 9,879,736 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	10,093,349 - 10,114,058 (-)	NCBI		UU_Cfam_GSD_1.0

Zkscan5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	138,120,730 - 138,139,773 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	1,805,484 - 1,824,743 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	1,805,534 - 1,825,582 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZKSCAN5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	6,442,391 - 6,466,430 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	6,442,315 - 6,464,718 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	6,589,045 - 6,611,406 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZKSCAN5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	13,630,936 - 13,662,654 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	13,630,174 - 13,660,822 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	2,642,439 - 2,674,879 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zkscan5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	32,945,659 - 32,970,323 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	32,944,867 - 32,970,991 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zkscan5
172 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	144
Count of miRNA genes:	102
Interacting mature miRNAs:	124
Transcripts:	ENSRNOT00000001300, ENSRNOT00000060999
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	9318216	12829686	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	6833190	17870186	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	3906969	10373166	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079573 ⟹ ENSRNOP00000073992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	9,392,603 - 9,405,807 (-)	Ensembl
Rnor_6.0 Ensembl	12	11,162,843 - 11,175,917 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080154 ⟹ ENSRNOP00000074380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	11,157,684 - 11,163,981 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082535 ⟹ ENSRNOP00000070669

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	11,154,807 - 11,157,583 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090073 ⟹ ENSRNOP00000071257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	9,384,571 - 9,405,881 (-)	Ensembl
Rnor_6.0 Ensembl	12	11,154,794 - 11,176,106 (-)	Ensembl

RefSeq Acc Id:

NM_001107119 ⟹ NP_001100589

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	14,498,342 - 14,519,537 (-)	NCBI
mRatBN7.2	12	9,384,566 - 9,405,763 (-)	NCBI
Rnor_6.0	12	11,154,807 - 11,176,002 (-)	NCBI
Rnor_5.0	12	13,224,021 - 13,245,216 (-)	NCBI
RGSC_v3.4	12	9,697,741 - 9,718,773 (-)	RGD
Celera	12	11,189,559 - 11,210,703 (-)	RGD

Sequence:

show sequence

TTGTGAGAACTCCATCTTCCAAGCCTAGGCTGCGGGGAGTTTGAGCTTTGGGTCCCCGGGACTT
AGAGACTGGAGAGGAGCCGGTAGGGCACACAGGGTCCTGTCCCTAACCTTGACGCGGCCGGTCT
GTCTCTCCCGGTCAGGCGCTATTCCGAAGAATCCAGGTCCGAATTTCTGAGTATAACCGTGCTT
CTCCTAGAACTAATGAAGTCTTCCGTTTATCTGTCAAGCCCTTATGGCTTGAAAGCCAGAACGA
GATATGACCATTTTAATGGTTTTCACTCCTATTCTGACTTAAGTTTGGCTTATGATCGAGAGAA
GAAACGACTCTATCTGGAATAATCTTATTCCATTATTTATATGAGATGTGGACTTTTTCATTTC
TAAAACTTTTAAGTTTGGCCTGATGTCACTTTTTAATGGCCATTTTTTTTTGCGTTATTAAAAT
CCGGACATAGTCACTATTAGTTGTTTTATGAGTGAAGCGATGACTAACTTGTAGTCAATATCTT
AAAGTGAATGACATTGTTGAGTGGTTTTCTTTAGTGTAGATGACGTCGTTGCCACCTCTCTTGG
CTAATAATAATTTCCGACATACCAGTAAGGTTGTTCACTGCAAAAAGTGCCCTTTAGAAGAGCA
GAGAACGATTTGGGTTAGTGCGGGCAGACTCTGGAGACTGAGTTGGAAGGATAATGACAGAATC
CAGGGCAGTTGTACACTTAGAGCCTCCCGCTGAGACTTCCCAAGAGCAAGCAGACCTTCTCATA
GTAAAAGTAGAAGAAGAGGACTGTTCCTGGATGCAGAGATACAACCGGCCAGTGCTTGAGACTT
TTTACCAGCGCTTCAAGCACTTCCAGTACCACGAGGCAACAGGGCCCCGCGATGCTCTCAGCCA
GCTCCGGGTTCTCTGCTGCGAGTGGCTGAGGCCGGAGCTGCACACCAAAGAGCAGATCCTGGAG
CTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCTGAAGAGTTTCAGGCCTGGGTGAGAGAAC
ATCACCCTGAGAGCGGAGAAGAAGCCGTGGCTGTGATAGAGAGTATCCAGAGAGAACTGGAGGA
GCGCAGGCAACAGATTGTCACATGTCCTGAAGTACTTCCTCAGAAGATGGTACCACCTGGAGCC
ACGCAGGAGTCCTCCAGTCACCAGTTTCTGCCTGTGGAGGCCCAGTCGGATCAAGAGCCACAGA
ATCTTCTGGAGGAGAATGCCCTTCCTGTTCTCCAGGTTCCTTCCGTTCCCTTGAAGGACAGCCA
GGAGCCAACAGCTTCACTCCTCTCAGCAGGGCCCCAGAAGTTGGTGAAAATTGAAGACGTGGCT
GATGTGGCTGTGTCCTTCATCCTGGAGGAATGGGGACATTTGGACCAGTCCCAGAAGTCTCTTA
GTAGGGATGGCAGAAAGGAAGATTGTGAGAGAACCACTCCTGTGGATTATGAACCCAAGGAGGG
CAACCTAGAGCTTGTGGTGCAGCAGGTCTCCGATGCAGTTGACCCACACTGGGTGGCCGCAGAA
AGCACGGAACAGAACAGTGTTCAGCCTCAAGAGTCTGCAGAAGTCAGTGACTTGAAGGACACAG
TGCAGAGATGGCAAGTGAATCCTACTTGGAGGAATCCAAGGCCGAAAAGATCTCTGAGCTCAGG
CCTGGATGTCAACCGGAAGCAGAAATCGAACGGCGAGCGAGGCCACAGATGCGGTGACTGCGGG
AAGTTTTTCCTCCAAGCCTCAAACTTCATTCAGCACCGGAGGATCCACACAGGAGAAAAACCGT
TTAAATGTGGGGAGTGTGGCAAAAGCTATAATCAGCGGGTTCACCTCACCCAGCACCAGAGAGT
CCACACTGGCGAGAAGCCCTACAAGTGCCAGGTGTGCGGGAAAGCGTTCCGAGTGAGTTCCCAT
CTGGTGCAGCATCACAGCGTCCACAGCGGGGAGAGGCCATATGGCTGTAGCGAGTGCGGGAAGA
GCTTTGGGCGGCACTCTCACCTCATCGAGCACCTGAAGCGCCACTTCAGAGAGAAATCCCAAAG
ATGCAGCGACAGAAGAAGTAAGGACACCAAACTGAATGTTCAGCAAATTCCAGGGCTTTCAGAA
GCAGACGTGGAACCATCGGGAGAAGTCCAAAGGAATGCTTGTGAGGCCGAAGGTCACAGTGAAG
GCTGTGAATACCAGGACGGGGCAGGTGGACAGGAGGGGGTTATCATGAAAGAAACCCTAGGACA
ATCCTCTTCAAAGAGGACAGACTGCAATGAACTCAGCTATGTCCACAAGAAGCCCTCTCCAGGA
GAGAGGCCACACAAATGTAACGAATGTGGGAAAAGCTTCATCCAGAGCGCACACCTCGTTCAGC
ATCGGAGAATCCATACTGGGGAGAAACCATTCAGGTGTGAGGAGTGTGGCAAAAGCTACAACCA
GCGTGTCCACCTCACTCAACATCACCGAGTTCACACGGGCGAGAAGCCCTACGCCTGTCACTTA
TGTGGGAAAGCCTTCCGAGTGAGGTCCCACCTTGTTCAGCACCAGAGTGTGCACAGCAGGGAGA
GGCCCTTCAAGTGCAACGAGTGTGGGAAGGGGTTTGGGAGGCGATCACATCTGGCCGGTCACCT
CCGACTCCACTCTAGAGATAAGTCCCACCAGTGCCACGAATGTGGAGAGATCTTCTTCCGGTAC
GTCAGCCTCCTTGAACACCAAATGCTCCATGTGGGCCAGAAGAGCGGGAACAACAGTGTGTGCG
AAGAGGCCCACAGCTGGAACCTGACCGTAATGGAAGATAAGAAGCTAGAGTTACAGGGGGAGCA
GTCTCCCTACCAGTGTGATACCTGTGGGAAAGCCTTTAGTTACACGTCCGACCTCATACAGCAC
TACAGAGCTCACTCTGCAGAGAAACCCCAGAAATGTGATGCATGCAGGGACAGCACCAGCCAGT
GTCCGCACAGAAGACAGCCACAGAAAATCTGCCCCAGCGGGAAATCCCATCAGTGCAGTGAGTG
TGGAAGGGGCTTCGGTCTGAAGTCTCATCTCAGTCAGCATCAGAGAGTGCACACTGGCGAGAAG
CCCTTCCAGTGCAAGGAGTGTGGAATGAAATTCAGTTGGAGCTGTAGCCTCCTCAAACATCTGC
GAAGCCACGAGAGGACAGACCCCTAAAGCTCCGGCAGCATACAGGAATCTGTTGGGAGGCAACC
TGATTTCAGAGAAGCCTTCCATGGCCCTCATAAGTGTAGCATCAAAAATGTTTCCCTCTTAGCT
ATCAGACCTACAGGTGTGGGGAAACCCTGTTAGGTAGAGCTTAGCCTTCAGGGACACTGGAGAG
CCACTGGGTGCTCCCATAGCAGCTTTACGCTCGGAACCTCTGGCTAGGCGTGGCGGTGCTCGCC
TGTATGCCTCGGAGGCAGAGGCAGGCAGATACCTGGTTTACATAGAAAGTTCCAGGCCAGCCAG
AGCTACATAGTGAGACCCCTGCGTGAGAGACAGACAGAGAGAGACCAAGAGACAGACAGACACA
CCTCTGGGTTCTGTGGATGAAGGAAAGTCTTGACATGGCATTGTTTATTTGAAACTCAGAAAAA
TAACAGAAGAGTCACGAATGCAGTAGAAATAAGCTTATTTGTAGTTTCCACCTCGACAGCATAG
CTATTCAGTGTCGTGCCTCAAAAGGAACTCTTCTGAGTGATACCCATCTTGGTACATCTCTGGA
AACGACTGTCCCAACCACTAGAATACTCCAGCCATTGTCCCATCCTGAGTATTAAATCTTTTGA
AAGGAA

hide sequence

RefSeq Acc Id:

XM_039089340 ⟹ XP_038945268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	14,498,342 - 14,518,570 (-)	NCBI
mRatBN7.2	12	9,384,561 - 9,404,795 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100589	(Get FASTA)	NCBI Sequence Viewer
	XP_038945268	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67019	(Get FASTA)	NCBI Sequence Viewer
	EDL89602	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071257.2
	ENSRNOP00000073992.2

RefSeq Acc Id:

NP_001100589 ⟸ NM_001107119

- UniProtKB:

A6K1E4 (UniProtKB/TrEMBL), A0A0G2K008 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTESRAVVHLEPPAETSQEQADLLIVKVEEEDCSWMQRYNRPVLETFYQRFKHFQYHEATGPRD
ALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEFQAWVREHHPESGEEAVAVIESIQR
ELEERRQQIVTCPEVLPQKMVPPGATQESSSHQFLPVEAQSDQEPQNLLEENALPVLQVPSVPL
KDSQEPTASLLSAGPQKLVKIEDVADVAVSFILEEWGHLDQSQKSLSRDGRKEDCERTTPVDYE
PKEGNLELVVQQVSDAVDPHWVAAESTEQNSVQPQESAEVSDLKDTVQRWQVNPTWRNPRPKRS
LSSGLDVNRKQKSNGERGHRCGDCGKFFLQASNFIQHRRIHTGEKPFKCGECGKSYNQRVHLTQ
HQRVHTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPYGCSECGKSFGRHSHLIEHLKRHFRE
KSQRCSDRRSKDTKLNVQQIPGLSEADVEPSGEVQRNACEAEGHSEGCEYQDGAGGQEGVIMKE
TLGQSSSKRTDCNELSYVHKKPSPGERPHKCNECGKSFIQSAHLVQHRRIHTGEKPFRCEECGK
SYNQRVHLTQHHRVHTGEKPYACHLCGKAFRVRSHLVQHQSVHSRERPFKCNECGKGFGRRSHL
AGHLRLHSRDKSHQCHECGEIFFRYVSLLEHQMLHVGQKSGNNSVCEEAHSWNLTVMEDKKLEL
QGEQSPYQCDTCGKAFSYTSDLIQHYRAHSAEKPQKCDACRDSTSQCPHRRQPQKICPSGKSHQ
CSECGRGFGLKSHLSQHQRVHTGEKPFQCKECGMKFSWSCSLLKHLRSHERTDP

hide sequence

Ensembl Acc Id:

ENSRNOP00000074380 ⟸ ENSRNOT00000080154

Ensembl Acc Id:

ENSRNOP00000071257 ⟸ ENSRNOT00000090073

Ensembl Acc Id:

ENSRNOP00000073992 ⟸ ENSRNOT00000079573

Ensembl Acc Id:

ENSRNOP00000070669 ⟸ ENSRNOT00000082535

RefSeq Acc Id:	XP_038945268 ⟸ XM_039089340
- Peptide Label:	isoform X1

Protein Domains

C2H2-type SCAN box

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698411

Promoter ID:

EPDNEW_R8936

Type:

multiple initiation site

Name:

Zkscan5_1

Description:

zinc finger with KRAB and SCAN domains 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	11,176,052 - 11,176,112	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311175	AgrOrtholog
BioCyc Gene	G2FUF-20062	BioCyc
Ensembl Genes	ENSRNOG00000059552	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079573.2	UniProtKB/TrEMBL
	ENSRNOT00000090073.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	SCAN-C2H2_zinc_finger	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:304275	UniProtKB/TrEMBL
NCBI Gene	304275	ENTREZGENE
PANTHER	PROTEIN ZBED8-RELATED	UniProtKB/TrEMBL
	SCAN DOMAIN-CONTAINING PROTEIN SCAND2P-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 672	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zkscan5	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000059552	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K008	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K6Y7_RAT	UniProtKB/TrEMBL
	A6K1E4	ENTREZGENE, UniProtKB/TrEMBL
	B2RZ43_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-03	Zkscan5	zinc finger with KRAB and SCAN domains 5	Zfp95_predicted	zinc finger protein 95 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Zfp95_predicted	zinc finger protein 95 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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