Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Kctd17 | Rat | myoclonic dystonia | | ISO | KCTD17 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Kctd17 | Rat | myoclonic dystonia | | ISO | KCTD17 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Kctd17 (Rattus norvegicus - Norway rat) |
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KCTD17 (Homo sapiens - human) |
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Kctd17 (Mus musculus - house mouse) |
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Kctd17 (Chinchilla lanigera - long-tailed chinchilla) |
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KCTD17 (Pan paniscus - bonobo/pygmy chimpanzee) |
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KCTD17 (Canis lupus familiaris - dog) |
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Kctd17 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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KCTD17 (Sus scrofa - pig) |
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KCTD17 (Chlorocebus sabaeus - green monkey) |
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Kctd17 (Heterocephalus glaber - naked mole-rat) |
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Variants in Kctd17
165 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 24 | 4 | 4 | 1 | 4 | 74 | 27 | 32 | 1 | |||
Low | 1 | 19 | 53 | 37 | 18 | 37 | 6 | 9 | 8 | 9 | 10 | 6 | |
Below cutoff | 2 | 2 | 2 |
RefSeq Transcripts | NM_001134529 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001395732 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006241976 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006241977 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006241978 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006241981 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006241983 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078948 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078951 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078953 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039078955 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063263391 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063263392 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063263393 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH473950 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000046563 ⟹ ENSRNOP00000044649 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000094378 ⟹ ENSRNOP00000083040 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000105459 ⟹ ENSRNOP00000081151 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000114366 ⟹ ENSRNOP00000086871 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000117512 ⟹ ENSRNOP00000093901 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001134529 ⟹ NP_001128001 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001395732 ⟹ NP_001382661 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_006241976 ⟹ XP_006242038 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006241977 ⟹ XP_006242039 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006241978 ⟹ XP_006242040 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006241983 ⟹ XP_006242045 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039078947 ⟹ XP_038934875 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078948 ⟹ XP_038934876 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078949 ⟹ XP_038934877 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078951 ⟹ XP_038934879 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078952 ⟹ XP_038934880 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078953 ⟹ XP_038934881 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078954 ⟹ XP_038934882 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039078955 ⟹ XP_038934883 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063263391 ⟹ XP_063119461 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063263392 ⟹ XP_063119462 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063263393 ⟹ XP_063119463 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001128001 | (Get FASTA) | NCBI Sequence Viewer |
NP_001382661 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006242038 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006242039 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006242040 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006242045 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934875 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934876 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934877 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934879 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934880 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934881 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934882 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038934883 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063119461 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063119462 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063119463 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM15868 | (Get FASTA) | NCBI Sequence Viewer |
EDM15869 | (Get FASTA) | NCBI Sequence Viewer | |
EDM15870 | (Get FASTA) | NCBI Sequence Viewer | |
EDM15871 | (Get FASTA) | NCBI Sequence Viewer | |
EDM15872 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000044649 | ||
ENSRNOP00000044649.3 | |||
ENSRNOP00000081151 | |||
ENSRNOP00000081151.1 | |||
ENSRNOP00000083040 | |||
ENSRNOP00000083040.1 | |||
ENSRNOP00000086871 | |||
ENSRNOP00000086871.1 | |||
ENSRNOP00000093901 | |||
ENSRNOP00000093901.1 |
RefSeq Acc Id: | NP_001128001 ⟸ NM_001134529 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A6HSK3 (UniProtKB/TrEMBL), A6HSK4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006242045 ⟸ XM_006241983 |
- Peptide Label: | isoform X13 |
- UniProtKB: | A6HSK1 (UniProtKB/TrEMBL), A6HSK4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006242039 ⟸ XM_006241977 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I5ZRW4 (UniProtKB/TrEMBL), A6HSK0 (UniProtKB/TrEMBL), A6HSK4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006242038 ⟸ XM_006241976 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6AKZ1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006242040 ⟸ XM_006241978 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6A664 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000044649 ⟸ ENSRNOT00000046563 |
RefSeq Acc Id: | XP_038934879 ⟸ XM_039078951 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_038934875 ⟸ XM_039078947 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038934876 ⟸ XM_039078948 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038934877 ⟸ XM_039078949 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038934880 ⟸ XM_039078952 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_038934882 ⟸ XM_039078954 |
- Peptide Label: | isoform X11 |
- UniProtKB: | A0A8I5ZZ48 (UniProtKB/TrEMBL), A6HSK4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934881 ⟸ XM_039078953 |
- Peptide Label: | isoform X10 |
- UniProtKB: | A6HSK4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038934883 ⟸ XM_039078955 |
- Peptide Label: | isoform X14 |
- UniProtKB: | A6HSK4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000093901 ⟸ ENSRNOT00000117512 |
RefSeq Acc Id: | ENSRNOP00000086871 ⟸ ENSRNOT00000114366 |
RefSeq Acc Id: | ENSRNOP00000081151 ⟸ ENSRNOT00000105459 |
RefSeq Acc Id: | ENSRNOP00000083040 ⟸ ENSRNOT00000094378 |
RefSeq Acc Id: | NP_001382661 ⟸ NM_001395732 |
- Peptide Label: | isoform 1 |
- UniProtKB: | D3ZYQ0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063119462 ⟸ XM_063263392 |
- Peptide Label: | isoform X10 |
- UniProtKB: | A6HSK4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063119461 ⟸ XM_063263391 |
- Peptide Label: | isoform X9 |
- UniProtKB: | A6HSK4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063119463 ⟸ XM_063263393 |
- Peptide Label: | isoform X12 |
- UniProtKB: | A6HSK4 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZYQ0-F1-model_v2 | AlphaFold | D3ZYQ0 | 1-246 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13695461 | ||||||||
Promoter ID: | EPDNEW_R5986 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Kctd17_1 | ||||||||
Description: | potassium channel tetramerization domain containing 17 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1311154 | AgrOrtholog |
BioCyc Gene | G2FUF-32820 | BioCyc |
Ensembl Genes | ENSRNOG00000000231 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000046563 | ENTREZGENE |
ENSRNOT00000046563.3 | UniProtKB/TrEMBL | |
ENSRNOT00000094378.1 | UniProtKB/TrEMBL | |
ENSRNOT00000105459 | ENTREZGENE | |
ENSRNOT00000105459.1 | UniProtKB/TrEMBL | |
ENSRNOT00000114366.1 | UniProtKB/TrEMBL | |
ENSRNOT00000117512.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.70.2000 | UniProtKB/TrEMBL |
6.10.140.750 | UniProtKB/TrEMBL | |
InterPro | BTB/POZ-like | UniProtKB/TrEMBL |
BTB/POZ_fold | UniProtKB/TrEMBL | |
K_chnl_volt-dep_Kv_tetra | UniProtKB/TrEMBL | |
KEGG Report | rno:300317 | UniProtKB/TrEMBL |
NCBI Gene | 300317 | ENTREZGENE |
PANTHER | BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD17 | UniProtKB/TrEMBL |
POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN | UniProtKB/TrEMBL | |
Pfam | K_tetra | UniProtKB/TrEMBL |
PhenoGen | Kctd17 | PhenoGen |
RatGTEx | ENSRNOG00000000231 | RatGTEx |
SMART | BTB | UniProtKB/TrEMBL |
Superfamily-SCOP | BTB/POZ_fold | UniProtKB/TrEMBL |
UniProt | A0A8I5ZRW4 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I5ZZ48 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6A664 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6AKZ1 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HSK0 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HSK1 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HSK3 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HSK4 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZYQ0 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-07-09 | Kctd17 | potassium channel tetramerization domain containing 17 | Kctd17 | potassium channel tetramerisation domain containing 17 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2010-04-23 | Kctd17 | potassium channel tetramerisation domain containing 17 | RGD1311154 | similar to hypothetical protein FLJ12242 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | RGD1311154 | similar to hypothetical protein FLJ12242 | RGD1311154_predicted | similar to hypothetical protein FLJ12242 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-20 | RGD1311154_predicted | similar to hypothetical protein FLJ12242 (predicted) | LOC300317_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC300317_predicted | similar to hypothetical protein FLJ12242 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |