Emsy (EMSY transcriptional repressor, BRCA2 interacting) - Rat Genome Database

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Gene: Emsy (EMSY transcriptional repressor, BRCA2 interacting) Rattus norvegicus
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Symbol: Emsy
Name: EMSY transcriptional repressor, BRCA2 interacting
RGD ID: 1310712
Description: Predicted to enable identical protein binding activity. Predicted to be involved in DNA repair; chromatin organization; and regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human EMSY (EMSY transcriptional repressor, BRCA2 interacting); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BRCA2-interacting transcriptional repressor EMSY; EMSY BRCA2-interacting transcriptional repressor; LOC361607; RGD1310712; similar to EMSY protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81162,295,167 - 162,364,742 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)EnsemblGRCr8
mRatBN7.21152,881,485 - 152,960,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1160,873,340 - 160,942,633 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,053,517 - 168,122,810 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,927,031 - 160,996,328 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1161,272,509 - 161,342,058 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1166,261,707 - 166,331,257 (-)NCBILyon_Normotensive
Lyon_Hypertensive1162,901,956 - 162,971,506 (-)NCBILyon_Hypertensive
F344_StmMcwi1161,490,914 - 161,560,499 (-)NCBIF344_StmMcwi
Rnor_6.01163,541,071 - 163,618,576 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,545,326 - 163,611,299 (-)Ensemblrn6Rnor6.0
Rnor_5.01169,747,123 - 169,839,501 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41155,861,200 - 155,932,861 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1150,973,049 - 151,047,360 (-)NCBICelera
RGSC_v3.11155,940,649 - 156,009,533 (-)NCBI
Cytogenetic Map1q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Polymorphisms in the airway epithelium related genes CDHR3 and EMSY are associated with asthma susceptibility. Zhang M, etal., BMC Pulm Med. 2020 Nov 19;20(1):305. doi: 10.1186/s12890-020-01334-0.
Additional References at PubMed
PMID:15947784  


Genomics

Comparative Map Data
Emsy
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81162,295,167 - 162,364,742 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)EnsemblGRCr8
mRatBN7.21152,881,485 - 152,960,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1160,873,340 - 160,942,633 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,053,517 - 168,122,810 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01160,927,031 - 160,996,328 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1161,272,509 - 161,342,058 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1166,261,707 - 166,331,257 (-)NCBILyon_Normotensive
Lyon_Hypertensive1162,901,956 - 162,971,506 (-)NCBILyon_Hypertensive
F344_StmMcwi1161,490,914 - 161,560,499 (-)NCBIF344_StmMcwi
Rnor_6.01163,541,071 - 163,618,576 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,545,326 - 163,611,299 (-)Ensemblrn6Rnor6.0
Rnor_5.01169,747,123 - 169,839,501 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41155,861,200 - 155,932,861 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1150,973,049 - 151,047,360 (-)NCBICelera
RGSC_v3.11155,940,649 - 156,009,533 (-)NCBI
Cytogenetic Map1q32NCBI
EMSY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381176,445,018 - 76,553,031 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1176,444,887 - 76,553,031 (+)Ensemblhg38GRCh38
GRCh371176,156,062 - 76,264,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,833,717 - 75,940,237 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341175,833,716 - 75,940,236NCBI
Celera1173,463,866 - 73,570,375 (+)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1172,452,941 - 72,559,477 (+)NCBIHuRef
CHM1_11176,039,558 - 76,146,132 (+)NCBICHM1_1
T2T-CHM13v2.01176,374,728 - 76,482,726 (+)NCBIT2T-CHM13v2.0
Emsy
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39798,236,344 - 98,308,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl798,236,344 - 98,305,990 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38798,587,130 - 98,656,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,587,137 - 98,656,783 (-)Ensemblmm10GRCm38
MGSCv377105,739,104 - 105,805,079 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36798,463,584 - 98,531,976 (-)NCBIMGSCv36mm8
Celera798,911,156 - 98,980,911 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.86NCBI
Emsy
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541415,401,664 - 15,477,828 (-)Ensembl
ChiLan1.0NW_00495541415,395,851 - 15,482,490 (-)NCBIChiLan1.0ChiLan1.0
EMSY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2977,367,342 - 77,476,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,412,566 - 78,520,514 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01171,496,577 - 71,604,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11174,932,490 - 75,029,953 (-)NCBIPanPan1.1PanPan1.1panPan2
EMSY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12122,149,131 - 22,289,857 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2122,149,127 - 22,289,875 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2121,976,172 - 22,066,414 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02122,349,723 - 22,440,312 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12122,124,481 - 22,214,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02122,344,100 - 22,434,365 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02122,263,335 - 22,353,692 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Emsy
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,530,876 - 63,613,738 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364985,130,470 - 5,213,919 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364985,130,503 - 5,213,341 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMSY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,628,053 - 10,716,396 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1910,628,053 - 10,715,814 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2911,731,933 - 11,826,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMSY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,657,747 - 67,762,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,657,753 - 67,760,610 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604358,025,648 - 58,131,443 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emsy
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624817624,168 - 717,333 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624817634,134 - 719,387 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Emsy
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1296,860,850 - 96,929,024 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Emsy
590 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:42
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000020882, ENSRNOT00000030463, ENSRNOT00000043788
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1131179947176179947Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)1137611478182611478Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1153679879198679879Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1132760429191848948Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1153679879205813246Rat
8694166Bw147Body weight QTL 1476.830.001body mass (VT:0001259)body weight gain (CMO:0000420)1153788989198788989Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1142582336182383862Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1161077990206077990Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1159894717207261263Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1141173126169168317Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1155359438194575574Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1140833106185833106Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131243790176243790Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1132760429191848948Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1153680016182383862Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1153680016183564652Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1143092939188092939Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436178317588Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1140048073185048073Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
8693608Alc24Alcohol consumption QTL 242.30.74drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1159863716177663210Rat
1576310Schws2Schwannoma susceptibility QTL 20.029nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1153788989198788989Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436180021436Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760429191190115Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1132966869206393015Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1140915717185915717Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1132760429191848948Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat
7411599Foco11Food consumption QTL 1118.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1153788989198788989Rat

Markers in Region
D1Rat231  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81162,314,997 - 162,315,229 (+)Marker Load Pipeline
mRatBN7.21152,903,814 - 152,904,046 (+)MAPPERmRatBN7.2
Rnor_6.01163,563,403 - 163,563,634NCBIRnor6.0
Rnor_5.01169,766,954 - 169,767,185UniSTSRnor5.0
RGSC_v3.41155,880,320 - 155,880,552RGDRGSC3.4
RGSC_v3.41155,880,321 - 155,880,552UniSTSRGSC3.4
Celera1150,992,882 - 150,993,119UniSTS
RGSC_v3.11155,958,727 - 155,958,958RGD
RH 3.4 Map11212.8UniSTS
RH 3.4 Map11212.8RGD
RH 2.0 Map1786.8RGD
SHRSP x BN Map176.2299RGD
Cytogenetic Map1q32UniSTS
BE106040  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,928,670 - 152,928,880 (+)MAPPERmRatBN7.2
Rnor_6.01163,588,213 - 163,588,422NCBIRnor6.0
Rnor_5.01169,791,781 - 169,791,990UniSTSRnor5.0
RGSC_v3.41155,907,088 - 155,907,297UniSTSRGSC3.4
Celera1151,017,825 - 151,018,034UniSTS
RH 3.4 Map11209.99UniSTS
Cytogenetic Map1q32UniSTS
RH138509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,954,529 - 152,954,701 (+)MAPPERmRatBN7.2
Rnor_6.01163,614,033 - 163,614,204NCBIRnor6.0
Rnor_5.01169,817,601 - 169,817,772UniSTSRnor5.0
RGSC_v3.41155,933,862 - 155,934,033UniSTSRGSC3.4
Celera1151,042,817 - 151,042,988UniSTS
RH 3.4 Map11210.9UniSTS
Cytogenetic Map1q32UniSTS
AI231560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,900,560 - 152,900,780 (+)MAPPERmRatBN7.2
Rnor_6.01163,560,149 - 163,560,368NCBIRnor6.0
Rnor_5.01169,763,700 - 169,763,919UniSTSRnor5.0
RGSC_v3.41155,877,067 - 155,877,286UniSTSRGSC3.4
Celera1150,989,628 - 150,989,847UniSTS
RH 3.4 Map11210.3UniSTS
Cytogenetic Map1q32UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 16 12 150 249 91 90 65 139 59 22 485 331 11 228 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY724538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000043788   ⟹   ENSRNOP00000040421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)Ensembl
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
Rnor_6.0 Ensembl1163,545,326 - 163,611,299 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081509   ⟹   ENSRNOP00000068873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1163,551,196 - 163,554,839 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098402   ⟹   ENSRNOP00000082935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)Ensembl
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112537   ⟹   ENSRNOP00000097921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)Ensembl
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117742   ⟹   ENSRNOP00000094017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)Ensembl
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119160   ⟹   ENSRNOP00000077337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)Ensembl
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120187   ⟹   ENSRNOP00000079335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1162,295,169 - 162,364,707 (-)Ensembl
mRatBN7.2 Ensembl1152,883,992 - 152,953,528 (-)Ensembl
RefSeq Acc Id: NM_001400843   ⟹   NP_001387772
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,169 - 162,364,707 (-)NCBI
mRatBN7.21152,883,986 - 152,953,531 (-)NCBI
Dahl_SR_JrHsd1161,272,509 - 161,342,058 (-)NCBI
Lyon_Normotensive1166,261,707 - 166,331,257 (-)NCBI
Lyon_Hypertensive1162,901,956 - 162,971,506 (-)NCBI
F344_StmMcwi1161,490,914 - 161,560,499 (-)NCBI
RefSeq Acc Id: XM_006229802   ⟹   XP_006229864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,419 (-)NCBI
Rnor_6.01163,541,071 - 163,618,576 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229804   ⟹   XP_006229866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229805   ⟹   XP_006229867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229807   ⟹   XP_006229869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,420 (-)NCBI
Rnor_6.01163,545,116 - 163,618,576 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229808   ⟹   XP_006229870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,416 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229809   ⟹   XP_006229871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,419 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229810   ⟹   XP_006229872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
Rnor_6.01163,545,116 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229811   ⟹   XP_006229873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,419 (-)NCBI
Rnor_6.01163,541,071 - 163,618,575 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229812   ⟹   XP_006229874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,299,770 - 162,364,742 (-)NCBI
mRatBN7.21152,888,587 - 152,960,419 (-)NCBI
Rnor_6.01163,548,225 - 163,618,576 (-)NCBI
Rnor_5.01169,747,123 - 169,839,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590189   ⟹   XP_017445678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,419 (-)NCBI
Rnor_6.01163,545,116 - 163,618,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101091   ⟹   XP_038957019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,419 (-)NCBI
RefSeq Acc Id: XM_039101092   ⟹   XP_038957020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,418 (-)NCBI
RefSeq Acc Id: XM_039101094   ⟹   XP_038957022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,415 (-)NCBI
RefSeq Acc Id: XM_039101095   ⟹   XP_038957023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,884,119 - 152,960,416 (-)NCBI
RefSeq Acc Id: XM_039101096   ⟹   XP_038957024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,418 (-)NCBI
RefSeq Acc Id: XM_039101097   ⟹   XP_038957025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,415 (-)NCBI
RefSeq Acc Id: XM_039101098   ⟹   XP_038957026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,415 (-)NCBI
RefSeq Acc Id: XM_039101099   ⟹   XP_038957027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
mRatBN7.21152,881,485 - 152,960,414 (-)NCBI
RefSeq Acc Id: XM_063267084   ⟹   XP_063123154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267093   ⟹   XP_063123163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267101   ⟹   XP_063123171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267113   ⟹   XP_063123183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267114   ⟹   XP_063123184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267115   ⟹   XP_063123185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267121   ⟹   XP_063123191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267128   ⟹   XP_063123198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267133   ⟹   XP_063123203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267137   ⟹   XP_063123207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267141   ⟹   XP_063123211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267144   ⟹   XP_063123214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267146   ⟹   XP_063123216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267148   ⟹   XP_063123218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,364,742 (-)NCBI
RefSeq Acc Id: XM_063267155   ⟹   XP_063123225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,320,892 (-)NCBI
RefSeq Acc Id: XM_063267156   ⟹   XP_063123226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81162,295,167 - 162,320,890 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387772 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229864 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229866 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229867 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229869 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229870 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229871 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229872 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229873 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229874 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445678 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957019 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957022 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957025 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957027 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123154 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123171 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123183 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123184 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123185 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123191 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123198 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123203 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123207 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123211 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123214 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123216 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123225 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040421
  ENSRNOP00000040421.6
  ENSRNOP00000077337.2
  ENSRNOP00000079335
  ENSRNOP00000079335.2
  ENSRNOP00000082935
  ENSRNOP00000082935.2
  ENSRNOP00000094017
  ENSRNOP00000094017.1
  ENSRNOP00000097921
  ENSRNOP00000097921.2
RefSeq Acc Id: XP_006229869   ⟸   XM_006229807
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229873   ⟸   XM_006229811
- Peptide Label: isoform X16
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229867   ⟸   XM_006229805
- Peptide Label: isoform X4
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229872   ⟸   XM_006229810
- Peptide Label: isoform X15
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229871   ⟸   XM_006229809
- Peptide Label: isoform X11
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229866   ⟸   XM_006229804
- Peptide Label: isoform X3
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229864   ⟸   XM_006229802
- Peptide Label: isoform X1
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229870   ⟸   XM_006229808
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AMY7 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229874   ⟸   XM_006229812
- Peptide Label: isoform X22
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445678   ⟸   XM_017590189
- Peptide Label: isoform X6
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040421   ⟸   ENSRNOT00000043788
Ensembl Acc Id: ENSRNOP00000068873   ⟸   ENSRNOT00000081509
RefSeq Acc Id: XP_038957024   ⟸   XM_039101096
- Peptide Label: isoform X18
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957026   ⟸   XM_039101098
- Peptide Label: isoform X34
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957025   ⟸   XM_039101097
- Peptide Label: isoform X12
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957027   ⟸   XM_039101099
- Peptide Label: isoform X25
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957019   ⟸   XM_039101091
- Peptide Label: isoform X2
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957020   ⟸   XM_039101092
- Peptide Label: isoform X5
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957023   ⟸   XM_039101095
- Peptide Label: isoform X13
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957022   ⟸   XM_039101094
- Peptide Label: isoform X10
- UniProtKB: A0A8I5YCB7 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094017   ⟸   ENSRNOT00000117742
Ensembl Acc Id: ENSRNOP00000097921   ⟸   ENSRNOT00000112537
Ensembl Acc Id: ENSRNOP00000077337   ⟸   ENSRNOT00000119160
Ensembl Acc Id: ENSRNOP00000082935   ⟸   ENSRNOT00000098402
Ensembl Acc Id: ENSRNOP00000079335   ⟸   ENSRNOT00000120187
RefSeq Acc Id: NP_001387772   ⟸   NM_001400843
- UniProtKB: A0A8I6ATJ6 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123214   ⟸   XM_063267144
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063123185   ⟸   XM_063267115
- Peptide Label: isoform X21
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123218   ⟸   XM_063267148
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063123211   ⟸   XM_063267141
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063123183   ⟸   XM_063267113
- Peptide Label: isoform X19
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123207   ⟸   XM_063267137
- Peptide Label: isoform X27
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123198   ⟸   XM_063267128
- Peptide Label: isoform X24
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123216   ⟸   XM_063267146
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063123163   ⟸   XM_063267093
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123171   ⟸   XM_063267101
- Peptide Label: isoform X17
- UniProtKB: A0A8I5ZN84 (UniProtKB/TrEMBL),   D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123191   ⟸   XM_063267121
- Peptide Label: isoform X23
- UniProtKB: D4AC97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123154   ⟸   XM_063267084
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123184   ⟸   XM_063267114
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZY83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123203   ⟸   XM_063267133
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063123225   ⟸   XM_063267155
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063123226   ⟸   XM_063267156
- Peptide Label: isoform X33
Protein Domains
ENT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AC97-F1-model_v2 AlphaFold D4AC97 1-1265 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310712 AgrOrtholog
BioCyc Gene G2FUF-58418 BioCyc
Ensembl Genes ENSRNOG00000015560 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043788 ENTREZGENE
  ENSRNOT00000043788.8 UniProtKB/TrEMBL
  ENSRNOT00000098402 ENTREZGENE
  ENSRNOT00000098402.2 UniProtKB/TrEMBL
  ENSRNOT00000112537 ENTREZGENE
  ENSRNOT00000112537.2 UniProtKB/TrEMBL
  ENSRNOT00000117742 ENTREZGENE
  ENSRNOT00000117742.2 UniProtKB/TrEMBL
  ENSRNOT00000119160.2 UniProtKB/TrEMBL
  ENSRNOT00000120187 ENTREZGENE
  ENSRNOT00000120187.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1240.40 UniProtKB/TrEMBL
InterPro EMSY UniProtKB/TrEMBL
  ENT_dom-like_sf UniProtKB/TrEMBL
  ENT_N UniProtKB/TrEMBL
NCBI Gene 361607 ENTREZGENE
PANTHER BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY UniProtKB/TrEMBL
  PTHR16500 UniProtKB/TrEMBL
Pfam ENT UniProtKB/TrEMBL
PhenoGen Emsy PhenoGen
PROSITE ENT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015560 RatGTEx
SMART ENT UniProtKB/TrEMBL
Superfamily-SCOP SSF158639 UniProtKB/TrEMBL
UniProt A0A8I5YCB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZN84 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZY83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATJ6 ENTREZGENE, UniProtKB/TrEMBL
  D4AC97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Emsy  EMSY transcriptional repressor, BRCA2 interacting  Emsy  EMSY BRCA2-interacting transcriptional repressor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-05 Emsy  EMSY BRCA2-interacting transcriptional repressor  RGD1310712  similar to EMSY protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310712  similar to EMSY protein   RGD1310712_predicted  similar to EMSY protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310712_predicted  similar to EMSY protein (predicted)  LOC361607_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361607_predicted  similar to EMSY protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL