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Gene: Rap1gap (Rap1 GTPase-activating protein) Rattus norvegicus

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Symbol:

Rap1gap

Name:

Rap1 GTPase-activating protein

RGD ID:

1309908

Description:

Predicted to enable GTPase activator activity; protein homodimerization activity; and small GTPase binding activity. Involved in cellular response to glial cell derived neurotrophic factor; negative regulation of neuron differentiation; and negative regulation of thyroid gland epithelial cell proliferation. Located in several cellular components, including dendrite; early endosome; and neuronal cell body. Orthologous to human RAP1GAP (RAP1 GTPase activating protein); INTERACTS WITH 4,4'-sulfonyldiphenol; acetamide; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313644; rap1 GTPase-activating protein 1; RAP1, GTPase activating protein 1; Rap1ga1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAP1GAP (RAP1 GTPase activating protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rap1gap (Rap1 GTPase-activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rap1gap (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAP1GAP (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAP1GAP (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rap1gap (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAP1GAP (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAP1GAP (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rap1gap (RAP1 GTPase activating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAP1GAP (RAP1 GTPase activating protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rap1gap (Rap1 GTPase-activating protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-166d12.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	rap1gap (RAP1 GTPase activating protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F53A10.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RapGAP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	155,157,511 - 155,222,622 (+)	NCBI		GRCr8
mRatBN7.2	5	149,873,987 - 149,939,254 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	149,892,019 - 149,939,253 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	152,587,863 - 152,635,071 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	154,362,154 - 154,409,364 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	154,344,163 - 154,391,373 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	156,008,868 - 156,074,350 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	156,026,911 - 156,074,395 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	159,764,852 - 159,829,865 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	156,468,558 - 156,489,592 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	156,434,614 - 156,499,630 (+)	NCBI
Celera	5	148,288,148 - 148,335,223 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ISO)

acute promyelocytic leukemia (ISO)

bipolar disorder (ISO)

congenital disorder of glycosylation Ir (ISO)

Disease Progression (ISO)

focal segmental glomerulosclerosis (ISO)

hyperprolinemia type 2 (ISO)

melanoma (ISO)

myelodysplastic syndrome (ISO)

pancreatic cancer (ISO)

papillary thyroid carcinoma (ISO)

Parkinson's disease 6 (ISO)

Thyroid Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzene (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

butanal (ISO)

caffeine (ISO)

captan (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

diethylstilbestrol (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

folpet (ISO)

fonofos (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

lead(0) (ISO)

leflunomide (ISO)

menadione (ISO)

methapyrilene (ISO)

N-nitrosodiethylamine (EXP)

nitrofen (EXP)

O-methyleugenol (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

propanal (ISO)

resveratrol (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sulindac sulfide (ISO)

sunitinib (ISO)

terbufos (ISO)

tert-butyl hydroperoxide (ISO)

tetraphene (ISO)

thioacetamide (EXP)

Tributyltin oxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

XL147 (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (ISO)

cellular response to glial cell derived neurotrophic factor (IDA)

establishment of localization in cell (ISO)

negative regulation of GTP binding (IMP)

negative regulation of microvillus assembly (ISO)

negative regulation of neuron differentiation (IMP)

negative regulation of thyroid gland epithelial cell proliferation (IMP)

phagocytosis (ISO)

positive regulation of cell-cell adhesion (ISO)

positive regulation of GTPase activity (ISO)

positive regulation of phagocytosis (ISO)

regulation of small GTPase mediated signal transduction (IEA)

Cellular Component

axon (IDA)

cytoplasm (IBA)

cytosol (ISO)

dendrite (IDA)

early endosome (IDA)

membrane (IBA,ISO)

neuronal cell body (IDA)

Molecular Function

GTPase activator activity (IBA,ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

small GTPase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rap1GAP interacts with RET and suppresses GDNF-induced neurite outgrowth.	Jiao L, etal., Cell Res. 2011 Feb;21(2):327-37. doi: 10.1038/cr.2010.139. Epub 2010 Sep 28.
4.	Activation of Gz attenuates Rap1-mediated differentiation of PC12 cells.	Meng J and Casey PJ, J Biol Chem 2002 Nov 8;277(45):43417-24. Epub 2002 Aug 26.
5.	Genome-wide expression analysis detects eight genes with robust alterations specific to bipolar I disorder: relevance to neuronal network perturbation.	Nakatani N, etal., Hum Mol Genet. 2006 Jun 15;15(12):1949-62. Epub 2006 May 10.
6.	Loss of Rap1GAP in papillary thyroid cancer.	Nellore A, etal., J Clin Endocrinol Metab. 2009 Mar;94(3):1026-32. doi: 10.1210/jc.2008-1042. Epub 2008 Dec 9.
7.	Podocyte-specific RAP1GAP expression contributes to focal segmental glomerulosclerosis-associated glomerular injury.	Potla U, etal., J Clin Invest. 2014 Apr;124(4):1757-69. doi: 10.1172/JCI67846. Epub 2014 Mar 18.
8.	Expression of Rap1GAP in human myeloid disease following microarray selection.	Qi X, etal., Genet Mol Res. 2008 Apr 29;7(2):379-87.
9.	GOA pipeline	RGD automated data pipeline
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Downregulation of Rap1GAP contributes to Ras transformation.	Tsygankova OM, etal., Mol Cell Biol. 2007 Oct;27(19):6647-58. Epub 2007 Jul 23.
12.	Identification of a putative tumor suppressor gene Rap1GAP in pancreatic cancer.	Zhang L, etal., Cancer Res. 2006 Jan 15;66(2):898-906.
13.	Down-regulation of Rap1GAP via promoter hypermethylation promotes melanoma cell proliferation, survival, and migration.	Zheng H, etal., Cancer Res. 2009 Jan 15;69(2):449-57. doi: 10.1158/0008-5472.CAN-08-2399.

Additional References at PubMed

PMID:10476970	PMID:12477932	PMID:14660640	PMID:15141215	PMID:15308668	PMID:15691704	PMID:16076873	PMID:16236484	PMID:16301177	PMID:16627466	PMID:17003042	PMID:17822405
PMID:18049479	PMID:18063584	PMID:18309292	PMID:18707003	PMID:19244230	PMID:22797597	PMID:24803656	PMID:27612188	PMID:28476918	PMID:32864822	PMID:38154105

Genomics

Comparative Map Data

Rap1gap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	155,157,511 - 155,222,622 (+)	NCBI		GRCr8
mRatBN7.2	5	149,873,987 - 149,939,254 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	149,892,019 - 149,939,253 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	152,587,863 - 152,635,071 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	154,362,154 - 154,409,364 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	154,344,163 - 154,391,373 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	156,008,868 - 156,074,350 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	156,026,911 - 156,074,395 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	159,764,852 - 159,829,865 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	156,468,558 - 156,489,592 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	156,434,614 - 156,499,630 (+)	NCBI
Celera	5	148,288,148 - 148,335,223 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

RAP1GAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	21,596,221 - 21,669,357 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	21,596,221 - 21,669,357 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	21,922,714 - 21,995,850 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	21,795,302 - 21,868,386 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	21,668,020 - 21,741,105	NCBI
Celera	1	20,245,427 - 20,318,559 (-)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	20,166,471 - 20,239,313 (-)	NCBI		HuRef
CHM1_1	1	22,034,710 - 22,107,810 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	21,420,130 - 21,493,311 (-)	NCBI		T2T-CHM13v2.0

Rap1gap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	137,391,549 - 137,457,172 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	137,392,037 - 137,457,172 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	137,664,711 - 137,729,861 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	137,664,726 - 137,729,861 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	137,237,618 - 137,285,782 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	136,953,779 - 137,001,943 (+)	NCBI		MGSCv36	mm8
Celera	4	135,889,498 - 135,937,347 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.02	NCBI

Rap1gap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	1,886,557 - 1,933,977 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	1,886,557 - 1,950,942 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAP1GAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	205,272,365 - 205,342,799 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	204,384,247 - 204,454,701 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	20,790,076 - 20,860,511 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	21,754,733 - 21,824,405 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	21,754,733 - 21,824,405 (-)	Ensembl	panpan1.1		panPan2

RAP1GAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	77,509,592 - 77,554,620 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	77,527,914 - 77,544,205 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	73,996,971 - 74,060,748 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	78,051,854 - 78,115,519 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	78,051,841 - 78,116,079 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	74,886,050 - 74,934,573 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	75,881,825 - 75,945,588 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	76,884,969 - 76,948,528 (+)	NCBI		UU_Cfam_GSD_1.0

Rap1gap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	41,417,746 - 41,459,565 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	7,242,824 - 7,284,395 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	7,242,528 - 7,284,342 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAP1GAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	79,664,485 - 79,735,361 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	79,664,486 - 79,735,361 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RAP1GAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	110,967,457 - 111,040,940 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	110,987,308 - 111,040,947 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	5,248,535 - 5,322,289 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rap1gap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	6,460,230 - 6,506,741 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	6,460,230 - 6,521,693 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rap1gap
309 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	397
Count of miRNA genes:	207
Interacting mature miRNAs:	239
Transcripts:	ENSRNOT00000046802
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
2302369	Scl60	Serum cholesterol level QTL 60	3.13		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	143608201	161165651	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	144358090	157869054	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	143799107	158428037	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	144377876	161317411	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat

Markers in Region

RH139790

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	149,938,708 - 149,938,927 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,073,805 - 156,074,023	NCBI	Rnor6.0
Rnor_5.0	5	159,829,320 - 159,829,538	UniSTS	Rnor5.0
RGSC_v3.4	5	156,538,159 - 156,538,377	UniSTS	RGSC3.4
RGSC_v3.4	5	156,489,046 - 156,489,264	UniSTS	RGSC3.4
Celera	5	148,334,678 - 148,334,896	UniSTS
RH 3.4 Map	5	1014.5	UniSTS
Cytogenetic Map	5	q36	UniSTS

AU047836

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	149,919,621 - 149,919,764 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	156,054,721 - 156,054,863	NCBI	Rnor6.0
Rnor_5.0	5	159,810,236 - 159,810,378	UniSTS	Rnor5.0
RGSC_v3.4	5	156,469,962 - 156,470,104	UniSTS	RGSC3.4
Celera	5	148,315,594 - 148,315,736	UniSTS
Cytogenetic Map	5	q36	UniSTS

BF387645

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	5	156,826,807 - 156,826,982	NCBI	Rnor5.0
Rnor_5.0	5	159,777,022 - 159,777,197	NCBI	Rnor5.0
Rnor_5.0	18	73,067,573 - 73,067,748	NCBI	Rnor5.0
RGSC_v3.4	5	156,436,408 - 156,436,582	UniSTS	RGSC3.4
Celera	5	148,282,102 - 148,282,276	UniSTS
RH 3.4 Map	5	1015.5	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_354337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_354338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB581996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB732529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046802 ⟹ ENSRNOP00000048749

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	149,892,019 - 149,939,253 (+)	Ensembl
Rnor_6.0 Ensembl	5	156,026,911 - 156,074,395 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098228 ⟹ ENSRNOP00000097348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	149,918,124 - 149,939,253 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116365 ⟹ ENSRNOP00000079431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	149,913,989 - 149,937,772 (+)	Ensembl

RefSeq Acc Id:

NM_001100713 ⟹ NP_001094183

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,175,300 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,891,934 - 149,939,254 (+)	NCBI
Rnor_6.0	5	156,026,899 - 156,074,350 (+)	NCBI
Rnor_5.0	5	159,764,852 - 159,829,865 (+)	NCBI
Celera	5	148,288,148 - 148,335,223 (+)	NCBI

Sequence:

show sequence

GGCGACGGGCAGCGGCGACGATACCATGAGCGGCCGGAAGCGCAGCTTCACCTTCGGTGCCTAT
GGAGGGGTGGACAAATCCTTCTCTCCTCGACAGAGTGTGTGGAGGAGTGATGGACAGAAACACA
GCTTCCCTCAGACACTGAACGTGTTACTAGTGGACTCAGTTCCCTCCCACCCTGCTTCACCCTA
CCCTAAGAACACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATGGATGAACAA
CGATGCTCCTTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAAGTGTCCATG
AGGTTTTGGGGCGAGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGTTTGGGGGCTACTGGAT
TGAAGGCACCAACCATGAAATCAGCAGTATCCCCGAGACAGAGCCGCTGCAGTCTCCCACCACC
AAGGTCAAGCTGGAGTGCAACCCCACAGCCAGAATCTACCGGAAGCACTTTCTCGGCAAGGAGC
ACTTCAATTACTACTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCTCGCTCAAGTATGATGT
CATCGGGGATCAAGAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCGGACCTACCATGATGTC
ATCCCCATCTCCTGCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGTTGGTATGTGAAG
ATGTCAACGTGGATCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCAGACTCATCGTCACCTT
TGACGAGCATGTTATCAGCAATAACTTCAAGTTCGGAGTCATCTATCAGAAGCTGGGGCAGACA
TCCGAGGAGGAACTGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTGGAATTCCTCGAGTTTC
TGGGCCAGAAAGTCAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTGGACGTGACTCACGG
GCAGACCGGGACCGAGTCCGTCTACTGCAACTTCCGCAACAAGGAGATCATGTTTCATGTGTCC
ACCAAGCTGCCATACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAACGGCACATCGGGAACG
ACATCGTCGCCGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTGCTTCCAA
CTTCCTGCATGCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAAG
GTCTCAGTCACCGCGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTCCCAGATCCTGCTGTGT
TCAGGAAGGGGCCTGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCAACGCTGAGTACGCCTG
CTACAAAGCAGAGAAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGCCCTTCTGGAGACACTC
TACGAGGAGCTCCACATCCACAGCCAGTCCATGATGGGCCTGGGTGGTGACGATGACAAGATGG
AGAATGGCAGCGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCGGAGCCGGAGCCA
GTCCATGGATGCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTCTACCAGCCACAGTGGG
AGCTTCACCCCCAACAACCCGGACCTGGCCAAGGCAGCTGGCATATCATTGCTTATTCCCGGGA
AAAGCGCGAGTAGATTCGGACGCCGGGGCAGCGCCTTAGGCATAGGAGCTGTGGAAGAGTCCCT
GATTGTCCCTGGAAAGAGTCCCACAAGGAAGAAGTCTGGTCCATTTGGCTCACGCCGCAGCAGC
GCCATTGGCATCGAGAACATCCAGGAGGTGCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCCAGA
AGACCCCAGACAGCGGGCATGTCTCTCAGGAGCCCAAGTCGGAGAACTCATCTACTCAGAGCTC
CCCAGAGATGCCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAGAACGGAAGTGCTGCAA
GGCTTTTCCAGATCCTCCTCCAGTGCCAGCAGCTTCACCAGCGTGGTGGAGGAGACGGAGGGCG
TGGATGGAGATGATACAGGCATGGAGAGCGTGTCGTCCTCAGGAACGCCCCATAAGCGGGACTC
CTTCCTCTACAGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGGGGGCAGCTCCCCAGGC
CTCACACGGTCACCCCACCCAGACGCCGTCAAGTCGGGGGACCCTGCGTGTCCCGAGATCAAGA
TCCAACTGGAAACATCTGAGCAGCACACACCCCAGATGGGCTGCTAGCTGCCATCTCATCAGCA
GGCGGGACTGAGCAGACGAGGCCTCAGAAGCACAAGAAGATGCTGCACCACATCCAGGCAGCTG
GCCCTCTGCCCCACAGCCACCACCCCAGCCCCTGGCGCCCCTCCCTCCAAGCCCTGGGCCCACC
CATCTGGGCTGTCTCCGCAGGGCGGAGCCATCCAGAGCTCTCGAATGGATGGATGCTGCTGGCA
TCACCCCACCCCTACTCCAGGCTGGAGCTCTGGGTGTAGGAAGGGACTGTGGCCCTGGATTGCC
CCCACTGGGGCCTCCGTCACACCGGGTTCCCGACTGGAGCCATGGGGAACGGGGTAGGAAAAGG
AGAAGGAGCGCCGTGCGCATGCGCGCACCCCACCGTGGAAGCAGCAGGTGCGGGGTGTGCCGAT
GAGCACTGGGCAGAGTCCTGTGTGGCTTCCGCGGTGAGACCCTCATTCTCTGGGCATCTGTGCC
GCAAGTGGACAAGAGCATTTCAGAGATCACTGAAGACAGATTCCGTGCACCTGCCCCAAAAGAG
GGTCGTTGTCCTAGGACCGCCTATCACGCTGACTGCTTCCTGAGGCCCCAGGTGGGCTGAGGGG
CCGGGGCTGCTGTACCCATCACCCAACTTGAGTCCCCCAGCTTTACCACAGAGCTGCCAACGTC
CTTTCACTGTCTCCATACGATGGATGGCCAAGTATCCTCTGCCGGGGATAGGGTCATCCCTGGC
TCCTCATCCAGCACCCAGCTTAACCCTGCCACCCCGCGCTCCTGGGCGTACTGGGTTGAGGGGG
TCTCAGCTGGTCTGGAGTCCAGACCTCGACATCCCCTGCCCACTATTGCTGTGGAGGGGGCTGC
CAGGCACAGCTGCCGTGAGCCAAGTCCTTGTGTGTATCTGTTCACTCTTAGGAGCCACGCCCAA
GGCGAGACTTCCAGCCCCAACACCTACTTTGGAAGCCCCGTGGCCACATGTATGTCAGTAAGGG
TTGTACAAAATAAATTCTATTTATCGCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415932 ⟹ NP_001402861

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,175,300 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,891,934 - 149,939,254 (+)	NCBI

RefSeq Acc Id:

NM_001415933 ⟹ NP_001402862

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,157,588 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,874,221 - 149,939,254 (+)	NCBI

RefSeq Acc Id:

XM_017593409 ⟹ XP_017448898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,175,318 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,891,954 - 149,939,254 (+)	NCBI
Rnor_6.0	5	156,026,854 - 156,074,350 (+)	NCBI

Sequence:

show sequence

GGTCCGGGTTGGGGCGGCGTTGCCAAGGTGACCCTGCGCTGGGCTGGCGACGGGCAGCGGCGAC
GATACCATGAGCGGCCGGAAGCGCAGCTTCACCTTCGGTGCCTATGGAGGGAGGAGTGATGGAC
AGAAACACAGCTTCCCTCAGACACTGAACGTGTTACTAGTGGACTCAGTTCCCTCCCACCCTGC
TTCACCCTACCCTAAGAACACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATG
GATGAACAACGATGCTCCTTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAA
GTGTCCATGAGGTTTTGGGGCGAGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGTTTGGGGG
CTACTGGATTGAAGGCACCAACCATGAAATCAGCAGTATCCCCGAGACAGAGCCGCTGCAGTCT
CCCACCACCAAGGTCAAGCTGGAGTGCAACCCCACAGCCAGAATCTACCGGAAGCACTTTCTCG
GCAAGGAGCACTTCAATTACTACTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCTCGCTCAA
GTATGATGTCATCGGGGATCAAGAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCGGACCTAC
CATGATGTCATCCCCATCTCCTGCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGTTGG
TATGTGAAGATGTCAACGTGGATCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCAGACTCAT
CGTCACCTTTGACGAGCATGTTATCAGCAATAACTTCAAGTTCGGAGTCATCTATCAGAAGCTG
GGGCAGACATCCGAGGAGGAACTGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTGGAATTCC
TCGAGTTTCTGGGCCAGAAAGTCAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTGGACGT
GACTCACGGGCAGACCGGGACCGAGTCCGTCTACTGCAACTTCCGCAACAAGGAGATCATGTTT
CATGTGTCCACCAAGCTGCCATACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAACGGCACA
TCGGGAACGACATCGTCGCCGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGAT
TGCTTCCAACTTCCTGCATGCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCC
CTCTACAAGGTCTCAGTCACCGCGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTCCCAGATC
CTGCTGTGTTCAGGAAGGGGCCTGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCAACGCTGA
GTACGCCTGCTACAAAGCAGAGAAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGCCCTTCTG
GAGACACTCTACGAGGAGCTCCACATCCACAGCCAGTCCATGATGGGCCTGGGTGGTGACGATG
ACAAGATGGAGAATGGCAGCGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCGGAG
CCGGAGCCAGTCCATGGATGCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTCTACCAGC
CACAGTGGGAGCTTCACCCCCAACAACCCGGACCTGGCCAAGGCAGCTGGCATATCATTGCTTA
TTCCCGGGAAAAGCGCGAGTAGATTCGGACGCCGGGGCAGCGCCTTAGGCATAGGAGCTGTGGA
AGAGTCCCTGATTGTCCCTGGAAAGAGTCCCACAAGGAAGAAGTCTGGTCCATTTGGCTCACGC
CGCAGCAGCGCCATTGGCATCGAGAACATCCAGGAGGTGCAGGAGAAGAGGGAGAGCCCTCCAG
CTGGCCAGAAGACCCCAGACAGCGGGCATGTCTCTCAGGAGCCCAAGTCGGAGAACTCATCTAC
TCAGAGCTCCCCAGAGATGCCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAGAACGGAA
GTGCTGCAAGGCTTTTCCAGATCCTCCTCCAGTGCCAGCAGCTTCACCAGCGTGGTGGAGGAGA
CGGAGGGCGTGGATGGAGATGATACAGGCATGGAGAGCGTGTCGTCCTCAGGAACGCCCCATAA
GCGGGACTCCTTCCTCTACAGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGGGGGCAGC
TCCCCAGGCCTCACACGGTCACCCCACCCAGACGCCGTCAAGTCGGGGGACCCTGCGTGTCCCG
AGATCAAGATCCAACTGGAAACATCTGAGCAGCACACACCCCAGATGGGCTGCTAGCTGCCATC
TCATCAGCAGGCGGGACTGAGCAGACGAGGCCTCAGAAGCACAAGAAGATGCTGCACCACATCC
AGGCAGCTGGCCCTCTGCCCCACAGCCACCACCCCAGCCCCTGGCGCCCCTCCCTCCAAGCCCT
GGGCCCACCCATCTGGGCTGTCTCCGCAGGGCGGAGCCATCCAGAGCTCTCGAATGGATGGATG
CTGCTGGCATCACCCCACCCCTACTCCAGGCTGGAGCTCTGGGTGTAGGAAGGGACTGTGGCCC
TGGATTGCCCCCACTGGGGCCTCCGTCACACCGGGTTCCCGACTGGAGCCATGGGGAACGGGGT
AGGAAAAGGAGAAGGAGCGCCGTGCGCATGCGCGCACCCCACCGTGGAAGCAGCAGGTGCGGGG
TGTGCCGATGAGCACTGGGCAGAGTCCTGTGTGGCTTCCGCGGTGAGACCCTCATTCTCTGGGC
ATCTGTGCCGCAAGTGGACAAGAGCATTTCAGAGATCACTGAAGACAGATTCCGTGCACCTGCC
CCAAAAGAGGGTCGTTGTCCTAGGACCGCCTATCACGCTGACTGCTTCCTGAGGCCCCAGGTGG
GCTGAGGGGCCGGGGCTGCTGTACCCATCACCCAACTTGAGTCCCCCAGCTTTACCACAGAGCT
GCCAACGTCCTTTCACTGTCTCCATACGATGGATGGCCAAGTATCCTCTGCCGGGGATAGGGTC
ATCCCTGGCTCCTCATCCAGCACCCAGCTTAACCCTGCCACCCCGCGCTCCTGGGCGTACTGGG
TTGAGGGGGTCTCAGCTGGTCTGGAGTCCAGACCTCGACATCCCCTGCCCACTATTGCTGTGGA
GGGGGCTGCCAGGCACAGCTGCCGTGAGCCAAGTCCTTGTGTGTATCTGTTCACTCTTAGGAGC
CACGCCCAAGGCGAGACTTCCAGCCCCAACACCTACTTTGGAAGCCCCGTGGCCACATGTATGT
CAGTAAGGGTTGTACAAAATAAATTCTATTTATCGCTATTGTA

hide sequence

RefSeq Acc Id:

XM_017593410 ⟹ XP_017448899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,198,058 - 155,220,871 (+)	NCBI
mRatBN7.2	5	149,914,687 - 149,937,524 (+)	NCBI
Rnor_6.0	5	156,044,509 - 156,072,619 (+)	NCBI

Sequence:

show sequence

CTTCCAGAAGTGTTCAGACCCAGCTACGACCCCACCGTGCAGCCAGGAAAGAACTCTGGGGGTC
GTCCTACCCTCTGTGGTGTCCAGAGCTGAGGGGAGGAGTGATGGACAGAAACACAGCTTCCCTC
AGACACTGAACGTGTTACTAGTGGACTCAGTTCCCTCCCACCCTGCTTCACCCTACCCTAAGAA
CACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATGGATGAACAACGATGCTCC
TTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAAGTGTCCATGAGGTTTTGG
GGCGAGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGTTTGGGGGCTACTGGATTGAAGGCAC
CAACCATGAAATCAGCAGTATCCCCGAGACAGAGCCGCTGCAGTCTCCCACCACCAAGGTCAAG
CTGGAGTGCAACCCCACAGCCAGAATCTACCGGAAGCACTTTCTCGGCAAGGAGCACTTCAATT
ACTACTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCTCGCTCAAGTATGATGTCATCGGGGA
TCAAGAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCGGACCTACCATGATGTCATCCCCATC
TCCTGCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGTTGGTATGTGAAGATGTCAACG
TGGATCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCAGACTCATCGTCACCTTTGACGAGCA
TGTTATCAGCAATAACTTCAAGTTCGGAGTCATCTATCAGAAGCTGGGGCAGACATCCGAGGAG
GAACTGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTGGAATTCCTCGAGTTTCTGGGCCAGA
AAGTCAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTGGACGTGACTCACGGGCAGACCGG
GACCGAGTCCGTCTACTGCAACTTCCGCAACAAGGAGATCATGTTTCATGTGTCCACCAAGCTG
CCATACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAACGGCACATCGGGAACGACATCGTCG
CCGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTGCTTCCAACTTCCTGCA
TGCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAAGGTCTCAGTC
ACCGCGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTCCCAGATCCTGCTGTGTTCAGGAAGG
GGCCTGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCAACGCTGAGTACGCCTGCTACAAAGC
AGAGAAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGCCCTTCTGGAGACACTCTACGAGGAG
CTCCACATCCACAGCCAGTCCATGATGGGCCTGGGTGGTGACGATGACAAGATGGAGAATGGCA
GCGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCGGAGCCGGAGCCAGTCCATGGA
TGCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTCTACCAGCCACAGTGGGAGCTTCACC
CCCAACAACCCGGACCTGGCCAAGGCAGCTGGCATATCATTGCTTATTCCCGGGAAAAGCGCGA
GTAGATTCGGACGCCGGGGCAGCGCCTTAGGCATAGGAGCTGTGGAAGAGTCCCTGATTGTCCC
TGGAAAGAGTCCCACAAGGAAGAAGTCTGGTCCATTTGGCTCACGCCGCAGCAGCGCCATTGGC
ATCGAGAACATCCAGGAGGTGCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCCAGAAGACCCCAG
ACAGCGGGCATGTCTCTCAGGAGCCCAAGTCGGAGAACTCATCTACTCAGAGCTCCCCAGAGAT
GCCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAGAACGGAAGTGCTGCAAGGCTTTTCC
AGATCCTCCTCCAGTGCCAGCAGCTTCACCAGCGTGGTGGAGGAGACGGAGGGCGTGGATGGAG
ATGATACAGGCATGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGGGGGCAGCTCCCCAG
GTAGACTGGCCTCAAAGGACAATAGAGGGTACCTGGGAG

hide sequence

RefSeq Acc Id:

XM_017593412 ⟹ XP_017448901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,201,579 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,918,206 - 149,939,254 (+)	NCBI
Rnor_6.0	5	156,053,303 - 156,074,350 (+)	NCBI

Sequence:

show sequence

GCGGCTGGGTGAGCCCAGAGAAGGCAGAGCAGCGGCGGCGGGACAGGAGCGCGGAGCTCCGGCT
ACGGAGCCCCGGGCCGGGCTGGCTTACAACGCCGCCGGGGCTGGGGCTCGGGATGGCGCAGCCG
CGGCCCCCAGCGCCCCAAGGCCGTCCGAGGAGGGGCTCGTTGCCGGCGGGGGCCGGCTGGCAGA
ACACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATGGATGAACAACGATGCTC
CTTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAAGTGTCCATGAGGTTTTG
GGGCGAGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGTTTGGGGGCTACTGGATTGAAGGCA
CCAACCATGAAATCAGCAGTATCCCCGAGACAGAGCCGCTGCAGTCTCCCACCACCAAGGTCAA
GCTGGAGTGCAACCCCACAGCCAGAATCTACCGGAAGCACTTTCTCGGCAAGGAGCACTTCAAT
TACTACTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCTCGCTCAAGTATGATGTCATCGGGG
ATCAAGAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCGGACCTACCATGATGTCATCCCCAT
CTCCTGCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGTTGGTATGTGAAGATGTCAAC
GTGGATCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCAGACTCATCGTCACCTTTGACGAGC
ATGTTATCAGCAATAACTTCAAGTTCGGAGTCATCTATCAGAAGCTGGGGCAGACATCCGAGGA
GGAACTGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTGGAATTCCTCGAGTTTCTGGGCCAG
AAAGTCAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTGGACGTGACTCACGGGCAGACCG
GGACCGAGTCCGTCTACTGCAACTTCCGCAACAAGGAGATCATGTTTCATGTGTCCACCAAGCT
GCCATACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAACGGCACATCGGGAACGACATCGTC
GCCGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTGCTTCCAACTTCCTGC
ATGCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAAGGTCTCAGT
CACCGCGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTCCCAGATCCTGCTGTGTTCAGGAAG
GGGCCTGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCAACGCTGAGTACGCCTGCTACAAAG
CAGAGAAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGCCCTTCTGGAGACACTCTACGAGGA
GCTCCACATCCACAGCCAGTCCATGATGGGCCTGGGTGGTGACGATGACAAGATGGAGAATGGC
AGCGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCGGAGCCGGAGCCAGTCCATGG
ATGCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTCTACCAGCCACAGTGGGAGCTTCAC
CCCCAACAACCCGGACCTGGCCAAGGCAGCTGGCATATCATTGCTTATTCCCGGGAAAAGCGCG
AGTAGATTCGGACGCCGGGGCAGCGCCTTAGGCATAGGAGCTGTGGAAGAGTCCCTGATTGTCC
CTGGAAAGAGTCCCACAAGGAAGAAGTCTGGTCCATTTGGCTCACGCCGCAGCAGCGCCATTGG
CATCGAGAACATCCAGGAGGTGCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCCAGAAGACCCCA
GACAGCGGGCATGTCTCTCAGGAGCCCAAGTCGGAGAACTCATCTACTCAGAGCTCCCCAGAGA
TGCCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAGAACGGAAGTGCTGCAAGGCTTTTC
CAGATCCTCCTCCAGTGCCAGCAGCTTCACCAGCGTGGTGGAGGAGACGGAGGGCGTGGATGGA
GATGATACAGGCATGGAGAGCGTGTCGTCCTCAGGAACGCCCCATAAGCGGGACTCCTTCCTCT
ACAGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGGGGGCAGCTCCCCAGGCCTCACACG
GTCACCCCACCCAGACGCCGTCAAGTCGGGGGACCCTGCGTGTCCCGAGATCAAGATCCAACTG
GAAACATCTGAGCAGCACACACCCCAGATGGGCTGCTAGCTGCCATCTCATCAGCAGGCGGGAC
TGAGCAGACGAGGCCTCAGAAGCACAAGAAGATGCTGCACCACATCCAGGCAGCTGGCCCTCTG
CCCCACAGCCACCACCCCAGCCCCTGGCGCCCCTCCCTCCAAGCCCTGGGCCCACCCATCTGGG
CTGTCTCCGCAGGGCGGAGCCATCCAGAGCTCTCGAATGGATGGATGCTGCTGGCATCACCCCA
CCCCTACTCCAGGCTGGAGCTCTGGGTGTAGGAAGGGACTGTGGCCCTGGATTGCCCCCACTGG
GGCCTCCGTCACACCGGGTTCCCGACTGGAGCCATGGGGAACGGGGTAGGAAAAGGAGAAGGAG
CGCCGTGCGCATGCGCGCACCCCACCGTGGAAGCAGCAGGTGCGGGGTGTGCCGATGAGCACTG
GGCAGAGTCCTGTGTGGCTTCCGCGGTGAGACCCTCATTCTCTGGGCATCTGTGCCGCAAGTGG
ACAAGAGCATTTCAGAGATCACTGAAGACAGATTCCGTGCACCTGCCCCAAAAGAGGGTCGTTG
TCCTAGGACCGCCTATCACGCTGACTGCTTCCTGAGGCCCCAGGTGGGCTGAGGGGCCGGGGCT
GCTGTACCCATCACCCAACTTGAGTCCCCCAGCTTTACCACAGAGCTGCCAACGTCCTTTCACT
GTCTCCATACGATGGATGGCCAAGTATCCTCTGCCGGGGATAGGGTCATCCCTGGCTCCTCATC
CAGCACCCAGCTTAACCCTGCCACCCCGCGCTCCTGGGCGTACTGGGTTGAGGGGGTCTCAGCT
GGTCTGGAGTCCAGACCTCGACATCCCCTGCCCACTATTGCTGTGGAGGGGGCTGCCAGGCACA
GCTGCCGTGAGCCAAGTCCTTGTGTGTATCTGTTCACTCTTAGGAGCCACGCCCAAGGCGAGAC
TTCCAGCCCCAACACCTACTTTGGAAGCCCCGTGGCCACATGTATGTCAGTAAGGGTTGTACAA
AATAAATTCTATTTATCGCTATTGTA

hide sequence

RefSeq Acc Id:

XM_017593413 ⟹ XP_017448902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,157,563 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,873,987 - 149,939,254 (+)	NCBI
Rnor_6.0	5	156,008,868 - 156,074,350 (+)	NCBI

Sequence:

show sequence

CCGCCTGCACTGCCACTGTCTGGCTGTGCAACCCTAAACTCGTTCCTACGCGTCTCTGGGCCTT
GGTTTCCCTACCTGTTAGCTAGGGGCGCGTGGCAGGGTTGGCCTCCCCGCCGCTCCCGCGCCTG
GGGCTCAGGCTCCGCAGTGATGGGGGAGCGGCGCCGGGAAGGAGCGCTCGGCGGTCACGTGACG
CCCCCCTCCCCGAACTGCGGCGGCGGTGGCGGCGGCGGTGGCGAGCGAGTCCCGGCAGAGCTGC
AGCGGCAGCCGCGGGCACCGGAGTGCCAAGCCCAGGACAACCCGACCCAGGCCTGTGGAGGAGT
GATGGACAGAAACACAGCTTCCCTCAGACACTGAACGTGTTACTAGTGGACTCAGTTCCCTCCC
ACCCTGCTTCACCCTACCCTAAGAACACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAG
CAGGATGGATGAACAACGATGCTCCTTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCC
TACCCAAGTGTCCATGAGGTTTTGGGGCGAGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGT
TTGGGGGCTACTGGATTGAAGGCACCAACCATGAAATCAGCAGTATCCCCGAGACAGAGCCGCT
GCAGTCTCCCACCACCAAGGTCAAGCTGGAGTGCAACCCCACAGCCAGAATCTACCGGAAGCAC
TTTCTCGGCAAGGAGCACTTCAATTACTACTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCT
CGCTCAAGTATGATGTCATCGGGGATCAAGAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCG
GACCTACCATGATGTCATCCCCATCTCCTGCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCA
AAGTTGGTATGTGAAGATGTCAACGTGGATCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCA
GACTCATCGTCACCTTTGACGAGCATGTTATCAGCAATAACTTCAAGTTCGGAGTCATCTATCA
GAAGCTGGGGCAGACATCCGAGGAGGAACTGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTG
GAATTCCTCGAGTTTCTGGGCCAGAAAGTCAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCC
TGGACGTGACTCACGGGCAGACCGGGACCGAGTCCGTCTACTGCAACTTCCGCAACAAGGAGAT
CATGTTTCATGTGTCCACCAAGCTGCCATACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAA
CGGCACATCGGGAACGACATCGTCGCCGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAG
ACATGATTGCTTCCAACTTCCTGCATGCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGA
TGGCCCCCTCTACAAGGTCTCAGTCACCGCGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTC
CCAGATCCTGCTGTGTTCAGGAAGGGGCCTGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCA
ACGCTGAGTACGCCTGCTACAAAGCAGAGAAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGC
CCTTCTGGAGACACTCTACGAGGAGCTCCACATCCACAGCCAGTCCATGATGGGCCTGGGTGGT
GACGATGACAAGATGGAGAATGGCAGCGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCA
TCCGGAGCCGGAGCCAGTCCATGGATGCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTC
TACCAGCCACAGTGGGAGCTTCACCCCCAACAACCCGGACCTGGCCAAGGCAGCTGGCATATCA
TTGCTTATTCCCGGGAAAAGCGCGAGTAGATTCGGACGCCGGGGCAGCGCCTTAGGCATAGGAG
CTGTGGAAGAGTCCCTGATTGTCCCTGGAAAGAGTCCCACAAGGAAGAAGTCTGGTCCATTTGG
CTCACGCCGCAGCAGCGCCATTGGCATCGAGAACATCCAGGAGGTGCAGGAGAAGAGGGAGAGC
CCTCCAGCTGGCCAGAAGACCCCAGACAGCGGGCATGTCTCTCAGGAGCCCAAGTCGGAGAACT
CATCTACTCAGAGCTCCCCAGAGATGCCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAG
AACGGAAGTGCTGCAAGGCTTTTCCAGATCCTCCTCCAGTGCCAGCAGCTTCACCAGCGTGGTG
GAGGAGACGGAGGGCGTGGATGGAGATGATACAGGCATGGAGAGCGTGTCGTCCTCAGGAACGC
CCCATAAGCGGGACTCCTTCCTCTACAGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGG
GGGCAGCTCCCCAGGCCTCACACGGTCACCCCACCCAGACGCCGTCAAGTCGGGGGACCCTGCG
TGTCCCGAGATCAAGATCCAACTGGAAACATCTGAGCAGCACACACCCCAGATGGGCTGCTAGC
TGCCATCTCATCAGCAGGCGGGACTGAGCAGACGAGGCCTCAGAAGCACAAGAAGATGCTGCAC
CACATCCAGGCAGCTGGCCCTCTGCCCCACAGCCACCACCCCAGCCCCTGGCGCCCCTCCCTCC
AAGCCCTGGGCCCACCCATCTGGGCTGTCTCCGCAGGGCGGAGCCATCCAGAGCTCTCGAATGG
ATGGATGCTGCTGGCATCACCCCACCCCTACTCCAGGCTGGAGCTCTGGGTGTAGGAAGGGACT
GTGGCCCTGGATTGCCCCCACTGGGGCCTCCGTCACACCGGGTTCCCGACTGGAGCCATGGGGA
ACGGGGTAGGAAAAGGAGAAGGAGCGCCGTGCGCATGCGCGCACCCCACCGTGGAAGCAGCAGG
TGCGGGGTGTGCCGATGAGCACTGGGCAGAGTCCTGTGTGGCTTCCGCGGTGAGACCCTCATTC
TCTGGGCATCTGTGCCGCAAGTGGACAAGAGCATTTCAGAGATCACTGAAGACAGATTCCGTGC
ACCTGCCCCAAAAGAGGGTCGTTGTCCTAGGACCGCCTATCACGCTGACTGCTTCCTGAGGCCC
CAGGTGGGCTGAGGGGCCGGGGCTGCTGTACCCATCACCCAACTTGAGTCCCCCAGCTTTACCA
CAGAGCTGCCAACGTCCTTTCACTGTCTCCATACGATGGATGGCCAAGTATCCTCTGCCGGGGA
TAGGGTCATCCCTGGCTCCTCATCCAGCACCCAGCTTAACCCTGCCACCCCGCGCTCCTGGGCG
TACTGGGTTGAGGGGGTCTCAGCTGGTCTGGAGTCCAGACCTCGACATCCCCTGCCCACTATTG
CTGTGGAGGGGGCTGCCAGGCACAGCTGCCGTGAGCCAAGTCCTTGTGTGTATCTGTTCACTCT
TAGGAGCCACGCCCAAGGCGAGACTTCCAGCCCCAACACCTACTTTGGAAGCCCCGTGGCCACA
TGTATGTCAGTAAGGGTTGTACAAAATAAATTCTATTTATCGCTATTGTA

hide sequence

RefSeq Acc Id:

XM_039110059 ⟹ XP_038965987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,201,579 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,918,218 - 149,939,254 (+)	NCBI

RefSeq Acc Id:

XM_063287777 ⟹ XP_063143847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,192,890 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287778 ⟹ XP_063143848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,175,348 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287779 ⟹ XP_063143849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,175,316 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287780 ⟹ XP_063143850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,192,571 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287781 ⟹ XP_063143851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,201,579 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287782 ⟹ XP_063143852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,192,571 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287783 ⟹ XP_063143853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,192,571 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287784 ⟹ XP_063143854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,175,320 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287785 ⟹ XP_063143855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,192,571 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287786 ⟹ XP_063143856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,192,685 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287787 ⟹ XP_063143857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,157,567 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XM_063287788 ⟹ XP_063143858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,157,511 - 155,222,622 (+)	NCBI

RefSeq Acc Id:

XR_354337

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,198,058 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,914,687 - 149,939,254 (+)	NCBI
Rnor_6.0	5	156,044,510 - 156,074,350 (+)	NCBI
Rnor_5.0	5	159,764,852 - 159,829,865 (+)	NCBI

Sequence:

show sequence

TTCCAGAAGTGTTCAGACCCAGCTACGACCCCACCGTGCAGCCAGGAAAGAACTCTGGGGGTCG
TCCTACCCTCTGTGGTGTCCAGAGCTGAGGGGAGGAGTGATGGACAGAAACACAGCTTCCCTCA
GACACTGAACGTGTTACTAGTGGACTCAGTTCCCTCCCACCCTGCTTCACCCTACCCTAAGAAC
ACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATGGATGAACAACGATGCTCCT
TCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAAGTGTCCATGAGGTTTTGGG
GCGAGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGTTTGGGGGCTACTGGATTGAAGGCACC
AACCATGAAATCAGCAGTATCCCCGAGACAGAGCCGCTGCAGTCTCCCACCACCAAGGTCAAGC
TGGAGTGCAACCCCACAGCCAGAATCTACCGGAAGCACTTTCTCGGCAAGGAGCACTTCAATTA
CTACTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCTCGCTCAAGTATGATGTCATCGGGGAT
CAAGAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCGGACCTACCATGATGTCATCCCCATCT
CCTGCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGTTGGTATGTGAAGATGTCAACGT
GGATCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCAGACTCATCGTCACCTTTGACGAGCAT
GTTATCAGCAATAACTTCAAGTTCGGAGTCATCTATCAGAAGCTGGGGCAGACATCCGAGGAGG
AACTGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTGGAATTCCTCGAGTTTCTGGGCCAGAA
AGTCAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTGGACGTGACTCACGGGCAGACCGGG
ACCGAGTCCGTCTACTGCAACTTCCGCAACAAGGAGATCATGTTTCATGTGTCCACCAAGCTGC
CATACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAACGGCACATCGGGAACGACATCGTCGC
CGTGGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTGCTTCCAACTTCCTGCAT
GCCTATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAAGGTCTCAGTCA
CCGCGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTCCCAGATCCTGCTGTGTTCAGGAAGGG
GCCTGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCAACGCTGAGTACGCCTGCTACAAAGCA
GAGAAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGCCCTTCTGGAGACACTCTACGAGGAGC
TCCACATCCACAGCCAGTCCATGATGGGCCTGGGTGGTGACGATGACAAGATGGAGAATGGCAG
CGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCGGAGCCGGAGCCAGTCCATGGAT
GCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTCTACCAGCCACAGTGGGAGCTTCACCC
CCAACAACCCGGACCTGGCCAAGGCAGCTGGCATATCATTGCTTATTCCCGGGAAAAGCGCGAG
TAGATTCGGACGCCGGGGCAGCGCCTTAGGCATAGGAGCTGTGGAAGAGTCCCTGATTGTCCCT
GGAAAGAGTCCCACAAGGAAGAAGTCTGGTCCATTTGGCTCACGCCGCAGCAGCGCCATTGGCA
TCGAGAACATCCAGGAGGTGCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCCAGAAGACCCCAGA
CAGCGGGCATGTCTCTCAGGAGCCCAAGTCGGAGAACTCATCTACTCAGAGCTCCCCAGAGATG
CCCACGACCAAGAACAGAGTGGAGTCGGCTGCCCAGAGAACGGAAGTGCTGCAAGGCTTTTCCA
GATCCTCCTCCAGTGCCAGCAGCTTCACCAGCGTGGTGGAGGAGACGGAGGGCGTGGATGGAGA
TGATACAGGCATGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGGGGGCAGCTCCCCAGG
CCTCACACGGTCACCCCACCCAGACGCCGTCAAGTCGGGGGACCCTGCGTGTCCCGAGATCAAG
ATCCAACTGGAAACATCTGAGCAGCACACACCCCAGATGGGCTGCTAGCTGCCATCTCATCAGC
AGGCGGGACTGAGCAGACGAGGCCTCAGAAGCACAAGAAGATGCTGCACCACATCCAGGCAGCT
GGCCCTCTGCCCCACAGCCACCACCCCAGCCCCTGGCGCCCCTCCCTCCAAGCCCTGGGCCCAC
CCATCTGGGCTGTCTCCGCAGGGCGGAGCCATCCAGAGCTCTCGAATGGATGGATGCTGCTGGC
ATCACCCCACCCCTACTCCAGGCTGGAGCTCTGGGTGTAGGAAGGGACTGTGGCCCTGGATTGC
CCCCACTGGGGCCTCCGTCACACCGGGTTCCCGACTGGAGCCATGGGGAACGGGGTAGGAAAAG
GAGAAGGAGCGCCGTGCGCATGCGCGCACCCCACCGTGGAAGCAGCAGGTGCGGGGTGTGCCGA
TGAGCACTGGGCAGAGTCCTGTGTGGCTTCCGCGGTGAGACCCTCATTCTCTGGGCATCTGTGC
CGCAAGTGGACAAGAGCATTTCAGAGATCACTGAAGACAGATTCCGTGCACCTGCCCCAAAAGA
GGGTCGTTGTCCTAGGACCGCCTATCACGCTGACTGCTTCCTGAGGCCCCAGGTGGGCTGAGGG
GCCGGGGCTGCTGTACCCATCACCCAACTTGAGTCCCCCAGCTTTACCACAGAGCTGCCAACGT
CCTTTCACTGTCTCCATACGATGGATGGCCAAGTATCCTCTGCCGGGGATAGGGTCATCCCTGG
CTCCTCATCCAGCACCCAGCTTAACCCTGCCACCCCGCGCTCCTGGGCGTACTGGGTTGAGGGG
GTCTCAGCTGGTCTGGAGTCCAGACCTCGACATCCCCTGCCCACTATTGCTGTGGAGGGGGCTG
CCAGGCACAGCTGCCGTGAGCCAAGTCCTTGTGTGTATCTGTTCACTCTTAGGAGCCACGCCCA
AGGCGAGACTTCCAGCCCCAACACCTACTTTGGAAGCCCCGTGGCCACATGTATGTCAGTAAGG
GTTGTACAAAATAAATTCTATTTATCGCTATTGTA

hide sequence

RefSeq Acc Id:

XR_354338

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	155,198,058 - 155,222,622 (+)	NCBI
mRatBN7.2	5	149,914,687 - 149,939,254 (+)	NCBI
Rnor_6.0	5	156,044,513 - 156,074,350 (+)	NCBI
Rnor_5.0	5	159,764,852 - 159,829,865 (+)	NCBI

Sequence:

show sequence

CAGAAGTGTTCAGACCCAGCTACGACCCCACCGTGCAGCCAGGAAAGAACTCTGGGGGTCGTCC
TACCCTCTGTGGTGTCCAGAGCTGAGGGGAGGAGTGATGGACAGAAACACAGCTTCCCTCAGAC
ACTGAACGTGTTACTAGTGGACTCAGTTCCCTCCCACCCTGCTTCACCCTACCCTAAGAACACA
GATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATGGATGAACAACGATGCTCCTTCC
CGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAAGTGTCCATGAGGTTTTGGGGCG
AGAAGGGCCCTTCCCCCTCATCCTGCTGCCCCAGTTTGGGGGCTACTGGATTGAAGGCACCAAC
CATGAAATCAGCAGTATCCCCGAGACAGAGCCGCTGCAGTCTCCCACCACCAAGGTCAAGCTGG
AGTGCAACCCCACAGCCAGAATCTACCGGAAGCACTTTCTCGGCAAGGAGCACTTCAATTACTA
CTCGCTGGACACTGCTCTCGGCCACCTGGTCTTCTCGCTCAAGTATGATGTCATCGGGGATCAA
GAGCACCTGAGGCTATTGCTTAGGACCAAGTGTCGGACCTACCATGATGTCATCCCCATCTCCT
GCCTCACCGAGTTCCCCAACGTGGTCCAGATGGCAAAGTTGGTATGTGAAGATGTCAACGTGGA
TCGATTCTACCCCGTGCTTTATCCTAAGGCTTCCAGACTCATCGTCACCTTTGACGAGCATGTT
ATCAGCAATAACTTCAAGTTCGGAGTCATCTATCAGAAGCTGGGGCAGACATCCGAGGAGGAAC
TGTTCAGCACCAACGAGGAAAGTCCTGCCTTTGTGGAATTCCTCGAGTTTCTGGGCCAGAAAGT
CAAACTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTGGACGTGACTCACGGGCAGACCGGGACC
GAGTCCGTCTACTGCAACTTCCGCAACAAGGAGATCATGTTTCATGTGTCCACCAAGCTGCCAT
ACACAGAAGGGGACGCCCAGCAGTTGCAGCGGAAACGGCACATCGGGAACGACATCGTCGCCGT
GGTCTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTGCTTCCAACTTCCTGCATGCC
TATGTGGTGGTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAAGGTCTCAGTCACCG
CGAGAGACGATGTGCCCTTTTTCGGGCCTCCCCTCCCAGATCCTGCTGTGTTCAGGAAGGGGCC
TGAGTTCCAGGAATTTCTTCTGACAAAGTTGATCAACGCTGAGTACGCCTGCTACAAAGCAGAG
AAGTTTGCCAAACTGGAGGAGCGGACACGTGCTGCCCTTCTGGAGACACTCTACGAGGAGCTCC
ACATCCACAGCCAGTCCATGATGGGCCTGGGTGGTGACGATGACAAGATGGAGAATGGCAGCGG
TGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCGGAGCCGGAGCCAGTCCATGGATGCC
ATGGGACTGAGCAACAAGAAACCCAACACCGTGTCTACCAGCCACAGTGGGAGCTTCACCCCCA
ACAACCCGGACCTGGCCAAGGCAGCTGGCATATCCCTGATTGTCCCTGGAAAGAGTCCCACAAG
GAAGAAGTCTGGTCCATTTGGCTCACGCCGCAGCAGCGCCATTGGCATCGAGAACATCCAGGAG
GTGCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCCAGAAGACCCCAGACAGCGGGCATGTCTCTC
AGGAGCCCAAGTCGGAGAACTCATCTACTCAGAGCTCCCCAGAGATGCCCACGACCAAGAACAG
AGTGGAGTCGGCTGCCCAGAGAACGGAAGTGCTGCAAGGCTTTTCCAGATCCTCCTCCAGTGCC
AGCAGCTTCACCAGCGTGGTGGAGGAGACGGAGGGCGTGGATGGAGATGATACAGGCATGCACA
TGGCTGGACGACAGCGTGAGCACCACGAGCGGGGGCAGCTCCCCAGGCCTCACACGGTCACCCC
ACCCAGACGCCGTCAAGTCGGGGGACCCTGCGTGTCCCGAGATCAAGATCCAACTGGAAACATC
TGAGCAGCACACACCCCAGATGGGCTGCTAGCTGCCATCTCATCAGCAGGCGGGACTGAGCAGA
CGAGGCCTCAGAAGCACAAGAAGATGCTGCACCACATCCAGGCAGCTGGCCCTCTGCCCCACAG
CCACCACCCCAGCCCCTGGCGCCCCTCCCTCCAAGCCCTGGGCCCACCCATCTGGGCTGTCTCC
GCAGGGCGGAGCCATCCAGAGCTCTCGAATGGATGGATGCTGCTGGCATCACCCCACCCCTACT
CCAGGCTGGAGCTCTGGGTGTAGGAAGGGACTGTGGCCCTGGATTGCCCCCACTGGGGCCTCCG
TCACACCGGGTTCCCGACTGGAGCCATGGGGAACGGGGTAGGAAAAGGAGAAGGAGCGCCGTGC
GCATGCGCGCACCCCACCGTGGAAGCAGCAGGTGCGGGGTGTGCCGATGAGCACTGGGCAGAGT
CCTGTGTGGCTTCCGCGGTGAGACCCTCATTCTCTGGGCATCTGTGCCGCAAGTGGACAAGAGC
ATTTCAGAGATCACTGAAGACAGATTCCGTGCACCTGCCCCAAAAGAGGGTCGTTGTCCTAGGA
CCGCCTATCACGCTGACTGCTTCCTGAGGCCCCAGGTGGGCTGAGGGGCCGGGGCTGCTGTACC
CATCACCCAACTTGAGTCCCCCAGCTTTACCACAGAGCTGCCAACGTCCTTTCACTGTCTCCAT
ACGATGGATGGCCAAGTATCCTCTGCCGGGGATAGGGTCATCCCTGGCTCCTCATCCAGCACCC
AGCTTAACCCTGCCACCCCGCGCTCCTGGGCGTACTGGGTTGAGGGGGTCTCAGCTGGTCTGGA
GTCCAGACCTCGACATCCCCTGCCCACTATTGCTGTGGAGGGGGCTGCCAGGCACAGCTGCCGT
GAGCCAAGTCCTTGTGTGTATCTGTTCACTCTTAGGAGCCACGCCCAAGGCGAGACTTCCAGCC
CCAACACCTACTTTGGAAGCCCCGTGGCCACATGTATGTCAGTAAGGGTTGTACAAAATAAATT
CTATTTATCGCTATTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094183	(Get FASTA)	NCBI Sequence Viewer
	NP_001402861	(Get FASTA)	NCBI Sequence Viewer
	NP_001402862	(Get FASTA)	NCBI Sequence Viewer
	XP_017448898	(Get FASTA)	NCBI Sequence Viewer
	XP_017448899	(Get FASTA)	NCBI Sequence Viewer
	XP_017448901	(Get FASTA)	NCBI Sequence Viewer
	XP_017448902	(Get FASTA)	NCBI Sequence Viewer
	XP_038965987	(Get FASTA)	NCBI Sequence Viewer
	XP_063143847	(Get FASTA)	NCBI Sequence Viewer
	XP_063143848	(Get FASTA)	NCBI Sequence Viewer
	XP_063143849	(Get FASTA)	NCBI Sequence Viewer
	XP_063143850	(Get FASTA)	NCBI Sequence Viewer
	XP_063143851	(Get FASTA)	NCBI Sequence Viewer
	XP_063143852	(Get FASTA)	NCBI Sequence Viewer
	XP_063143853	(Get FASTA)	NCBI Sequence Viewer
	XP_063143854	(Get FASTA)	NCBI Sequence Viewer
	XP_063143855	(Get FASTA)	NCBI Sequence Viewer
	XP_063143856	(Get FASTA)	NCBI Sequence Viewer
	XP_063143857	(Get FASTA)	NCBI Sequence Viewer
	XP_063143858	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89979	(Get FASTA)	NCBI Sequence Viewer
	EDL80845	(Get FASTA)	NCBI Sequence Viewer
	EDL80846	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048749.5
	ENSRNOP00000079431.1
	ENSRNOP00000097348.1

RefSeq Acc Id:	NP_001094183 ⟸ NM_001100713
- Peptide Label:	isoform 1
- UniProtKB:	F1LV89 (UniProtKB/TrEMBL), A6ITE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGRKRSFTFGAYGGVDKSFSPRQSVWRSDGQKHSFPQTLNVLLVDSVPSHPASPYPKNTDLFE MIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEIS SIPETEPLQSPTTKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLR LLLRTKCRTYHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNN FKFGVIYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVY CNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVV QAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAK LEERTRAALLETLYEELHIHSQSMMGLGGDDDKMENGSGGGGFFESFKRVIRSRSQSMDAMGLS NKKPNTVSTSHSGSFTPNNPDLAKAAGISLLIPGKSASRFGRRGSALGIGAVEESLIVPGKSPT RKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKN RVESAAQRTEVLQGFSRSSSSASSFTSVVEETEGVDGDDTGMESVSSSGTPHKRDSFLYSTWLD DSVSTTSGGSSPGLTRSPHPDAVKSGDPACPEIKIQLETSEQHTPQMGC hide sequence

RefSeq Acc Id:	XP_017448902 ⟸ XM_017593413
- Peptide Label:	isoform X14
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEIS SIPETEPLQSPTTKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLR LLLRTKCRTYHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNN FKFGVIYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVY CNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVV QAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAK LEERTRAALLETLYEELHIHSQSMMGLGGDDDKMENGSGGGGFFESFKRVIRSRSQSMDAMGLS NKKPNTVSTSHSGSFTPNNPDLAKAAGISLLIPGKSASRFGRRGSALGIGAVEESLIVPGKSPT RKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKN RVESAAQRTEVLQGFSRSSSSASSFTSVVEETEGVDGDDTGMESVSSSGTPHKRDSFLYSTWLD DSVSTTSGGSSPGLTRSPHPDAVKSGDPACPEIKIQLETSEQHTPQMGC hide sequence

RefSeq Acc Id:	XP_017448898 ⟸ XM_017593409
- Peptide Label:	isoform X5
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGRKRSFTFGAYGGRSDGQKHSFPQTLNVLLVDSVPSHPASPYPKNTDLFEMIEKMQGSRMDE QRCSFPPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEISSIPETEPLQSPT TKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHD VIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQ TSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHV STKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLY KVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLET LYEELHIHSQSMMGLGGDDDKMENGSGGGGFFESFKRVIRSRSQSMDAMGLSNKKPNTVSTSHS GSFTPNNPDLAKAAGISLLIPGKSASRFGRRGSALGIGAVEESLIVPGKSPTRKKSGPFGSRRS SAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKNRVESAAQRTEVL QGFSRSSSSASSFTSVVEETEGVDGDDTGMESVSSSGTPHKRDSFLYSTWLDDSVSTTSGGSSP GLTRSPHPDAVKSGDPACPEIKIQLETSEQHTPQMGC hide sequence

RefSeq Acc Id:	XP_017448899 ⟸ XM_017593410
- Peptide Label:	isoform X7
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEIS SIPETEPLQSPTTKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGDQEHLR LLLRTKCRTYHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNN FKFGVIYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVY CNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVV QAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAK LEERTRAALLETLYEELHIHSQSMMGLGGDDDKMENGSGGGGFFESFKRVIRSRSQSMDAMGLS NKKPNTVSTSHSGSFTPNNPDLAKAAGISLLIPGKSASRFGRRGSALGIGAVEESLIVPGKSPT RKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKN RVESAAQRTEVLQGFSRSSSSASSFTSVVEETEGVDGDDTGMHMAGRQREHHERGQLPR hide sequence

RefSeq Acc Id:	XP_017448901 ⟸ XM_017593412
- Peptide Label:	isoform X9
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQPRPPAPQGRPRRGSLPAGAGWQNTDLFEMIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSV HEVLGREGPFPLILLPQFGGYWIEGTNHEISSIPETEPLQSPTTKVKLECNPTARIYRKHFLGK EHFNYYSLDTALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHDVIPISCLTEFPNVVQMAKLVC EDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFSTNEESPAFVEFLE FLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIG NDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPA VFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGGDDDK MENGSGGGGFFESFKRVIRSRSQSMDAMGLSNKKPNTVSTSHSGSFTPNNPDLAKAAGISLLIP GKSASRFGRRGSALGIGAVEESLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRESPPAG QKTPDSGHVSQEPKSENSSTQSSPEMPTTKNRVESAAQRTEVLQGFSRSSSSASSFTSVVEETE GVDGDDTGMESVSSSGTPHKRDSFLYSTWLDDSVSTTSGGSSPGLTRSPHPDAVKSGDPACPEI KIQLETSEQHTPQMGC hide sequence

Ensembl Acc Id:

ENSRNOP00000048749 ⟸ ENSRNOT00000046802

RefSeq Acc Id:	XP_038965987 ⟸ XM_039110059
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6AU92 (UniProtKB/TrEMBL), A6ITE6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000079431 ⟸ ENSRNOT00000116365

Ensembl Acc Id:

ENSRNOP00000097348 ⟸ ENSRNOT00000098228

RefSeq Acc Id:	NP_001402862 ⟸ NM_001415933
- Peptide Label:	isoform 3
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402861 ⟸ NM_001415932
- Peptide Label:	isoform 2
- UniProtKB:	A6ITE4 (UniProtKB/TrEMBL), A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143858 ⟸ XM_063287788
- Peptide Label:	isoform X16
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143857 ⟸ XM_063287787
- Peptide Label:	isoform X15
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143849 ⟸ XM_063287779
- Peptide Label:	isoform X3
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143854 ⟸ XM_063287784
- Peptide Label:	isoform X11
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143848 ⟸ XM_063287778
- Peptide Label:	isoform X2
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143850 ⟸ XM_063287780
- Peptide Label:	isoform X4
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143852 ⟸ XM_063287782
- Peptide Label:	isoform X8
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143853 ⟸ XM_063287783
- Peptide Label:	isoform X10
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143855 ⟸ XM_063287785
- Peptide Label:	isoform X12
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143856 ⟸ XM_063287786
- Peptide Label:	isoform X14
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143847 ⟸ XM_063287777
- Peptide Label:	isoform X1
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143851 ⟸ XM_063287781
- Peptide Label:	isoform X6
- UniProtKB:	A6ITE6 (UniProtKB/TrEMBL)

Protein Domains

Rap-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LV89-F1-model_v2	AlphaFold	F1LV89	1-753	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309908	AgrOrtholog
BioCyc Gene	G2FUF-39472	BioCyc
Ensembl Genes	ENSRNOG00000013825	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000046802.6	UniProtKB/TrEMBL
	ENSRNOT00000098228.1	UniProtKB/TrEMBL
	ENSRNOT00000116365.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.11210	UniProtKB/TrEMBL
	6.10.140.210	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7317741	IMAGE-MGC_LOAD
InterPro	GoLoco_motif	UniProtKB/TrEMBL
	Rap/Ran-GAP_sf	UniProtKB/TrEMBL
	Rap1_Ran_GAP	UniProtKB/TrEMBL
	Rap_GAP_dom	UniProtKB/TrEMBL
KEGG Report	rno:313644	UniProtKB/TrEMBL
MGC_CLONE	MGC:109391	IMAGE-MGC_LOAD
NCBI Gene	313644	ENTREZGENE
PANTHER	RAP GTPASE-ACTIVATING PROTEIN	UniProtKB/TrEMBL
	RAP1 GTPASE-ACTIVATING PROTEIN 1	UniProtKB/TrEMBL
Pfam	GoLoco	UniProtKB/TrEMBL
	Rap-GAP_dimer	UniProtKB/TrEMBL
	Rap_GAP	UniProtKB/TrEMBL
PhenoGen	Rap1gap	PhenoGen
PROSITE	GOLOCO	UniProtKB/TrEMBL
	RAPGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013825	RatGTEx
SMART	GoLoco	UniProtKB/TrEMBL
Superfamily-SCOP	SSF111347	UniProtKB/TrEMBL
UniProt	A0A8I5ZN32_RAT	UniProtKB/TrEMBL
	A0A8I6AU92	ENTREZGENE, UniProtKB/TrEMBL
	A6ITE4	ENTREZGENE, UniProtKB/TrEMBL
	A6ITE6	ENTREZGENE, UniProtKB/TrEMBL
	F1LV89	ENTREZGENE, UniProtKB/TrEMBL
	Q5EB70_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Rap1gap	Rap1 GTPase-activating protein	Rap1ga1	RAP1, GTPase activating protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Rap1ga1	RAP1, GTPase activating protein 1	Rap1ga1_predicted	RAP1, GTPase activating protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rap1ga1_predicted	RAP1, GTPase activating protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD